Wall clock time and date at job start Tue Mar 31 2020 16:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 N 1.46496 * 109.47535 * 185.00041 * 4 2 1 6 6 C 1.46501 * 120.00066 * 269.99923 * 5 4 2 7 7 C 1.34776 * 120.00052 * 90.00363 * 5 4 2 8 8 O 1.21284 * 119.99930 * 359.97438 * 7 5 4 9 9 C 1.50707 * 120.00234 * 180.02562 * 7 5 4 10 10 S 1.80991 * 109.47157 * 179.97438 * 9 7 5 11 11 C 1.76199 * 100.00020 * 179.97438 * 10 9 7 12 12 H 1.07995 * 119.99595 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99831 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00615 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99723 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47339 * 90.00284 * 15 13 11 17 17 H 1.48504 * 109.47121 * 210.00135 * 15 13 11 18 18 H 1.48496 * 109.47194 * 329.99908 * 15 13 11 19 19 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 20 20 C 1.38565 * 119.99807 * 275.00125 * 19 2 1 21 21 C 1.39466 * 120.51652 * 359.71536 * 20 19 2 22 22 C 1.38470 * 118.31101 * 179.78433 * 21 20 19 23 23 F 1.35100 * 120.42959 * 180.26535 * 22 21 20 24 24 N 1.32786 * 119.13620 * 0.49162 * 22 21 20 25 25 C 1.31755 * 120.96956 * 359.74930 * 24 22 21 26 26 N 1.31767 * 121.85680 * 0.02562 * 25 24 22 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 32 32 H 1.09000 * 109.46659 * 90.00215 * 6 5 4 33 33 H 1.08996 * 109.47038 * 209.99571 * 6 5 4 34 34 H 1.08991 * 109.47465 * 330.00175 * 6 5 4 35 35 H 1.09005 * 109.46639 * 299.99775 * 9 7 5 36 36 H 1.08999 * 109.46919 * 59.99714 * 9 7 5 37 37 H 0.96996 * 120.00122 * 179.97438 * 14 13 11 38 38 H 0.97000 * 120.00117 * 94.99845 * 19 2 1 39 39 H 1.07994 * 120.84065 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.07559 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.3343 0.2339 -1.7613 7 6 4.0757 -1.8988 -0.6116 8 8 3.3850 -2.7764 -0.1387 9 6 5.5777 -2.0067 -0.5507 10 16 6.0387 -3.5467 0.2810 11 6 7.7946 -3.4172 0.2133 12 1 8.2551 -2.5571 -0.2498 13 6 8.5858 -4.4201 0.7561 14 7 8.0245 -5.4682 1.3211 15 14 10.4474 -4.2824 0.6850 16 1 10.9386 -3.5809 1.8981 17 1 11.0423 -5.6418 0.6244 18 1 10.8412 -3.5154 -0.5240 19 7 2.0184 -0.6906 1.1962 20 6 2.1507 0.0007 2.3898 21 6 1.8277 1.3554 2.4631 22 6 1.9728 2.0002 3.6799 23 9 1.6672 3.3107 3.8006 24 7 2.4205 1.3149 4.7254 25 6 2.7213 0.0365 4.6197 26 7 2.5937 -0.6162 3.4822 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6054 -1.7198 -1.2952 31 1 1.7517 -0.1584 -2.1369 32 1 4.5400 0.9846 -0.9983 33 1 5.2734 -0.1927 -2.1137 34 1 3.8103 0.6987 -2.5964 35 1 5.9833 -2.0042 -1.5625 36 1 5.9806 -1.1596 0.0044 37 1 8.5775 -6.1691 1.7001 38 1 2.2491 -1.6318 1.1527 39 1 1.4697 1.8871 1.5939 40 1 3.0833 -0.4912 5.4897 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115629971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:28 Heat of formation + Delta-G solvation = -41.327799 kcal Electronic energy + Delta-G solvation = -25608.774207 eV Core-core repulsion = 21692.165109 eV Total energy + Delta-G solvation = -3916.609098 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.23148 -41.96889 -41.01183 -38.32999 -36.41971 -34.59417 -34.42288 -32.93920 -31.18649 -30.65829 -28.25833 -27.70072 -26.44752 -25.69661 -24.58950 -22.33108 -20.74203 -19.91339 -19.47508 -19.23853 -18.07923 -17.38586 -17.31141 -17.14019 -16.99466 -16.88659 -16.48636 -16.06449 -15.79204 -15.59835 -15.35005 -14.79559 -14.64583 -14.56632 -14.46378 -13.93006 -13.81626 -13.54235 -13.32715 -13.17030 -12.97792 -12.90445 -12.77338 -12.58906 -12.40628 -12.05213 -11.74547 -11.68919 -11.15384 -10.93974 -10.87511 -10.51410 -10.27224 -9.75813 -9.28668 -8.65831 -8.35575 -6.12773 -0.17847 0.15381 1.25090 1.40629 1.44475 1.51258 1.55433 1.87360 2.14317 2.26576 2.35320 2.69323 2.98597 3.20689 3.25857 3.59004 3.67813 3.73883 3.91401 4.06204 4.14132 4.19467 4.20131 4.33045 4.44033 4.49476 4.55344 4.65864 4.74158 4.82714 4.88292 4.94522 5.23509 5.29455 5.40005 5.49334 5.60787 6.08538 6.17769 6.20270 6.38759 7.05888 7.08905 7.13755 8.73399 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003492 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.303465 B = 8016.077180 C = 9276.093228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.123 3.877 3 H 0.105 0.895 4 C 0.105 3.895 5 N -0.609 5.609 6 C 0.070 3.930 7 C 0.537 3.463 8 O -0.556 6.556 9 C -0.127 4.127 10 S -0.141 6.141 11 C -0.549 4.549 12 H 0.079 0.921 13 C 0.016 3.984 14 N -0.909 5.909 15 Si 0.995 3.005 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.258 1.258 19 N -0.697 5.697 20 C 0.452 3.548 21 C -0.310 4.310 22 C 0.369 3.631 23 F -0.103 7.103 24 N -0.615 5.615 25 C 0.374 3.626 26 N -0.611 5.611 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.271 0.729 38 H 0.410 0.590 39 H 0.180 0.820 40 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.583 18.563 -6.565 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 H 0.123 0.877 4 C -0.018 4.018 5 N -0.342 5.342 6 C -0.072 4.072 7 C 0.324 3.676 8 O -0.434 6.434 9 C -0.278 4.278 10 S 0.086 5.914 11 C -0.697 4.697 12 H 0.097 0.903 13 C -0.189 4.189 14 N -0.546 5.546 15 Si 0.817 3.183 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.182 1.182 19 N -0.330 5.330 20 C 0.207 3.793 21 C -0.340 4.340 22 C 0.211 3.789 23 F -0.082 7.082 24 N -0.341 5.341 25 C 0.085 3.915 26 N -0.337 5.337 27 H 0.124 0.876 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.163 0.837 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.250 0.750 39 H 0.198 0.802 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -15.359 16.818 -5.300 23.385 hybrid contribution 1.732 0.874 -0.718 2.069 sum -13.627 17.692 -6.018 23.128 Atomic orbital electron populations 1.22207 0.92631 1.03012 1.04159 1.21945 0.95691 0.97721 0.82844 0.87678 1.22097 0.78500 1.02808 0.98384 1.47812 1.07460 1.20892 1.58038 1.22114 0.95892 0.89479 0.99677 1.19997 0.89173 0.81497 0.76884 1.90612 1.64638 1.40789 1.47389 1.23367 0.95830 1.03409 1.05166 1.85511 1.06372 1.23646 1.75869 1.23187 0.91517 1.10183 1.44792 0.90293 1.26071 1.05166 0.93872 0.93756 1.70171 1.38044 1.09616 1.36734 0.85008 0.76101 0.77994 0.79236 1.19486 1.20153 1.18174 1.45412 1.67515 1.14057 1.06040 1.18636 0.85649 0.88061 0.86939 1.21851 1.17017 0.94972 1.00153 1.18175 0.91149 0.79464 0.90136 1.91639 1.89358 1.30757 1.96477 1.67870 1.21788 1.11306 1.33168 1.25025 0.87189 0.84805 0.94477 1.68131 1.23287 1.41648 1.00648 0.87617 0.92276 0.92797 0.90704 0.83736 0.92079 0.91227 0.86856 0.87659 0.88758 0.91987 0.74985 0.80238 0.75536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.46 71.98 0.68 -1.05 16 2 C 0.12 1.81 2.58 44.99 0.12 1.93 16 3 H 0.11 1.14 6.50 -2.39 -0.02 1.12 16 4 C 0.10 1.56 5.19 86.38 0.45 2.00 16 5 N -0.61 -12.96 2.77 -846.78 -2.35 -15.31 16 6 C 0.07 0.96 10.29 127.77 1.31 2.28 16 7 C 0.54 18.26 6.99 87.66 0.61 18.87 16 8 O -0.56 -23.09 13.18 -3.04 -0.04 -23.13 16 9 C -0.13 -4.95 4.71 71.24 0.34 -4.61 16 10 S -0.14 -7.76 20.57 -56.49 -1.16 -8.92 16 11 C -0.55 -31.39 9.50 67.95 0.65 -30.75 16 12 H 0.08 4.22 7.80 -2.91 -0.02 4.19 16 13 C 0.02 0.93 5.49 84.86 0.47 1.40 16 14 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 15 Si 0.99 43.69 29.55 68.60 2.03 45.71 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 19 N -0.70 -17.53 4.63 -324.14 -1.50 -19.03 16 20 C 0.45 12.26 7.69 133.10 1.02 13.28 16 21 C -0.31 -6.73 8.94 22.62 0.20 -6.53 16 22 C 0.37 9.16 8.50 84.60 0.72 9.87 16 23 F -0.10 -2.37 17.30 44.97 0.78 -1.59 16 24 N -0.61 -16.96 10.44 -201.32 -2.10 -19.07 16 25 C 0.37 10.16 12.28 180.90 2.22 12.38 16 26 N -0.61 -19.29 10.47 -197.70 -2.07 -21.36 16 27 H 0.11 0.44 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.71 7.80 -2.39 -0.02 0.70 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.07 1.47 7.42 -2.39 -0.02 1.45 16 31 H 0.14 0.77 7.89 -2.39 -0.02 0.75 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 1.10 6.44 -2.39 -0.02 1.09 16 34 H 0.11 0.65 7.89 -2.39 -0.02 0.63 16 35 H 0.11 3.73 7.40 -2.39 -0.02 3.71 16 36 H 0.09 3.52 8.11 -2.40 -0.02 3.50 16 37 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.41 13.37 5.95 -92.71 -0.55 12.82 16 39 H 0.18 2.60 6.33 -2.91 -0.02 2.58 16 40 H 0.23 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -80.25 355.41 3.19 -77.06 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.53 Total: 22.13 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 8.79 Total: 19.07 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -7.74 Total: -130.34 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.04 Total: -23.13 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.78 Total: -1.59 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -7.76 SS G_CDS: -1.16 Total: -8.92 kcal Total: -80.25 3.19 -77.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115629971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.737 kcal (2) G-P(sol) polarization free energy of solvation -80.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds