Wall clock time and date at job start Tue Mar 31 2020 15:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47437 * 2 1 4 4 H 1.09001 * 109.46985 * 304.89655 * 3 2 1 5 5 C 1.50694 * 109.47304 * 184.89644 * 3 2 1 6 6 H 1.08000 * 120.00367 * 245.44975 * 5 3 2 7 7 C 1.37879 * 119.99749 * 65.45589 * 5 3 2 8 8 N 1.31507 * 120.00211 * 9.46215 * 7 5 3 9 9 Si 1.86799 * 119.99764 * 189.46832 * 7 5 3 10 10 H 1.48507 * 109.47398 * 84.99161 * 9 7 5 11 11 H 1.48506 * 109.47458 * 204.98997 * 9 7 5 12 12 H 1.48499 * 109.47547 * 324.99039 * 9 7 5 13 13 N 1.46497 * 109.47031 * 64.89457 * 3 2 1 14 14 C 1.34781 * 120.00434 * 275.00072 * 13 3 2 15 15 O 1.21591 * 119.99518 * 0.02562 * 14 13 3 16 16 C 1.47605 * 120.00313 * 180.02562 * 14 13 3 17 17 C 1.39735 * 120.07635 * 180.02562 * 16 14 13 18 18 C 1.37682 * 119.91875 * 180.27447 * 17 16 14 19 19 C 1.39089 * 120.07941 * 359.51984 * 18 17 16 20 20 N 1.39696 * 119.92316 * 180.25873 * 19 18 17 21 21 C 1.34514 * 125.20172 * 179.90153 * 20 19 18 22 22 O 1.21401 * 125.79225 * 359.97438 * 21 20 19 23 23 C 1.47941 * 108.41733 * 179.88406 * 21 20 19 24 24 C 1.34376 * 106.78172 * 0.36739 * 23 21 20 25 25 C 1.34518 * 125.20176 * 0.19487 * 20 19 18 26 26 O 1.21394 * 125.79219 * 359.96909 * 25 20 19 27 27 C 1.39086 * 120.15409 * 0.45476 * 19 18 17 28 28 C 1.37689 * 120.07939 * 359.80168 * 27 19 18 29 29 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46972 * 300.00627 * 1 2 3 31 31 H 1.09008 * 109.46665 * 60.00411 * 1 2 3 32 32 H 1.08997 * 109.47241 * 239.99844 * 2 1 3 33 33 H 1.09002 * 109.47344 * 119.99580 * 2 1 3 34 34 H 0.97003 * 120.00140 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00204 * 95.00617 * 13 3 2 36 36 H 1.07998 * 120.04532 * 359.97438 * 17 16 14 37 37 H 1.08004 * 119.96333 * 179.74740 * 18 17 16 38 38 H 1.07999 * 126.60919 * 180.12454 * 23 21 20 39 39 H 1.08007 * 126.60612 * 179.81756 * 24 23 21 40 40 H 1.07998 * 119.96341 * 179.77247 * 27 19 18 41 41 H 1.07998 * 120.03549 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5421 1.4442 -0.1213 6 1 4.1494 1.8090 0.6939 7 6 4.1413 0.9800 -1.2731 8 7 3.4098 0.7114 -2.3324 9 14 5.9920 0.7327 -1.3287 10 1 6.3291 -0.6068 -0.7832 11 1 6.4621 0.8273 -2.7343 12 1 6.6563 1.7808 -0.5131 13 7 1.6504 2.0982 1.2507 14 6 0.4329 2.6653 1.3635 15 8 -0.3422 2.6322 0.4273 16 6 0.0405 3.3265 2.6235 17 6 -1.2216 3.9144 2.7423 18 6 -1.5821 4.5352 3.9171 19 6 -0.6956 4.5689 4.9884 20 7 -1.0669 5.1949 6.1807 21 6 -0.2972 5.2880 7.2800 22 8 0.8266 4.8447 7.3994 23 6 -1.0518 6.0241 8.3179 24 6 -2.2472 6.3294 7.7854 25 6 -2.2508 5.7921 6.4071 26 8 -3.1666 5.8760 5.6147 27 6 0.5612 3.9842 4.8738 28 6 0.9304 3.3663 3.7001 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8313 0.3845 -3.1427 35 1 2.2686 2.1244 1.9977 36 1 -1.9116 3.8862 1.9120 37 1 -2.5559 4.9934 4.0083 38 1 -0.7095 6.2658 9.3133 39 1 -3.0504 6.8646 8.2701 40 1 1.2485 4.0154 5.7063 41 1 1.9067 2.9129 3.6118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148894923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:43 Heat of formation + Delta-G solvation = -20.262666 kcal Electronic energy + Delta-G solvation = -26866.202328 eV Core-core repulsion = 22906.230285 eV Total energy + Delta-G solvation = -3959.972043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.13562 -39.74874 -39.30493 -38.09142 -36.76258 -35.07787 -34.13145 -32.45783 -31.35587 -30.85791 -29.64225 -26.97410 -26.00311 -24.47141 -23.52638 -22.89607 -21.20506 -21.15661 -20.32376 -19.40964 -18.41802 -17.87051 -17.28739 -16.69759 -16.34705 -15.97659 -15.53787 -14.94599 -14.76617 -14.58918 -14.55722 -14.55485 -14.37805 -14.12157 -13.53915 -13.41707 -13.17666 -12.82822 -12.64491 -12.10907 -11.64111 -11.47535 -11.36213 -11.11383 -11.09118 -11.01462 -10.86481 -10.77470 -10.35098 -10.33897 -10.20613 -9.69517 -9.11862 -9.11227 -9.08423 -8.50831 -8.48125 -7.84614 -6.14746 -4.20230 -0.56357 0.69345 1.29212 1.75001 1.94693 2.28115 3.14836 3.25382 3.27432 3.32395 3.33679 3.49553 4.03551 4.13551 4.37960 4.51580 4.65190 4.71393 4.74837 4.85887 4.97603 5.15032 5.18482 5.24729 5.41054 5.78152 5.84699 5.98198 6.18725 6.35468 6.36063 6.40302 6.45473 6.59547 6.60717 6.73745 7.00076 7.08474 7.17145 7.31673 7.40036 7.60867 7.70901 7.83634 8.06812 8.64211 8.78430 9.09241 9.45524 10.93501 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021208 B = 0.002640 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.918808 B =10605.093111 C =11551.039201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.268 3.732 4 H 0.058 0.942 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.700 5.700 14 C 0.541 3.459 15 O -0.542 6.542 16 C -0.125 4.125 17 C -0.044 4.044 18 C -0.148 4.148 19 C 0.136 3.864 20 N -0.529 5.529 21 C 0.537 3.463 22 O -0.438 6.438 23 C -0.134 4.134 24 C -0.135 4.135 25 C 0.537 3.463 26 O -0.438 6.438 27 C -0.146 4.146 28 C -0.067 4.067 29 H 0.024 0.976 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.387 0.613 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.189 0.811 39 H 0.189 0.811 40 H 0.155 0.845 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.921 10.531 22.933 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.166 3.834 4 H 0.076 0.924 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.348 5.348 14 C 0.327 3.673 15 O -0.422 6.422 16 C -0.129 4.129 17 C -0.063 4.063 18 C -0.167 4.167 19 C 0.046 3.954 20 N -0.264 5.264 21 C 0.327 3.673 22 O -0.308 6.308 23 C -0.156 4.156 24 C -0.156 4.156 25 C 0.327 3.673 26 O -0.308 6.308 27 C -0.165 4.165 28 C -0.087 4.087 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.221 0.779 36 H 0.163 0.837 37 H 0.172 0.828 38 H 0.206 0.794 39 H 0.206 0.794 40 H 0.173 0.827 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.301 10.204 21.622 26.033 hybrid contribution 1.358 -0.184 0.332 1.410 sum -8.942 10.020 21.953 25.735 Atomic orbital electron populations 1.21852 0.98002 0.98222 1.01559 1.21855 0.93017 0.99773 1.01234 1.18844 0.94437 0.88960 0.81133 0.92408 1.21164 0.90497 1.44135 1.01856 0.92072 1.24879 0.98475 0.95119 0.94956 1.69981 1.35776 1.43665 1.02150 0.86532 0.84989 0.78730 0.77274 1.20408 1.21169 1.19891 1.46458 1.14328 1.55356 1.18611 1.18054 0.83095 0.79456 0.86735 1.90756 1.51609 1.60112 1.39741 1.20522 0.95520 1.01440 0.95386 1.21187 0.95236 0.93044 0.96865 1.21420 1.00962 1.02401 0.91923 1.17932 0.95562 0.97753 0.84180 1.43973 1.17590 1.51065 1.13795 1.19502 0.85544 0.79504 0.82770 1.90750 1.16292 1.43477 1.80253 1.24642 0.94254 0.96248 1.00426 1.24641 0.99520 0.98598 0.92845 1.19500 0.81011 0.77476 0.89318 1.90747 1.36541 1.52293 1.51225 1.21368 0.95126 0.99872 1.00166 1.21293 0.99345 0.96568 0.91476 0.95733 0.94015 0.92900 0.90153 0.94664 0.92525 0.77922 0.83731 0.82753 0.79378 0.79386 0.82743 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.12 -2.88 5.50 -26.73 -0.15 -3.03 16 3 C 0.27 6.73 2.11 -69.09 -0.15 6.59 16 4 H 0.06 1.70 7.52 -51.93 -0.39 1.30 16 5 C -0.54 -14.19 8.66 -34.44 -0.30 -14.49 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.88 5.16 -17.82 -0.09 1.78 16 8 N -0.88 -24.88 12.16 55.43 0.67 -24.21 16 9 Si 0.90 20.63 29.55 -169.99 -5.02 15.60 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 13 N -0.70 -14.63 4.97 -55.95 -0.28 -14.91 16 14 C 0.54 11.04 6.33 -12.44 -0.08 10.96 16 15 O -0.54 -12.76 13.47 5.29 0.07 -12.69 16 16 C -0.12 -2.06 5.88 -104.96 -0.62 -2.67 16 17 C -0.04 -0.66 9.58 -39.23 -0.38 -1.04 16 18 C -0.15 -1.98 9.32 -39.47 -0.37 -2.35 16 19 C 0.14 1.74 6.60 -83.64 -0.55 1.18 16 20 N -0.53 -5.37 2.85 -61.43 -0.17 -5.55 16 21 C 0.54 4.61 7.92 -12.40 -0.10 4.51 16 22 O -0.44 -4.89 14.99 5.45 0.08 -4.81 16 23 C -0.13 -0.47 11.16 -36.97 -0.41 -0.88 16 24 C -0.13 -0.47 11.15 -36.97 -0.41 -0.88 16 25 C 0.54 4.62 7.92 -12.40 -0.10 4.52 16 26 O -0.44 -4.91 14.99 5.46 0.08 -4.83 16 27 C -0.15 -1.90 9.32 -39.47 -0.37 -2.27 16 28 C -0.07 -0.95 9.53 -39.22 -0.37 -1.32 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.91 5.65 -51.93 -0.29 0.62 16 31 H 0.05 1.26 7.84 -51.92 -0.41 0.85 16 32 H 0.08 2.11 6.80 -51.93 -0.35 1.76 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.39 7.03 6.55 -40.82 -0.27 6.76 16 36 H 0.14 2.18 7.64 -52.49 -0.40 1.78 16 37 H 0.16 1.98 5.31 -52.48 -0.28 1.70 16 38 H 0.19 0.00 8.06 -52.49 -0.42 -0.42 16 39 H 0.19 -0.01 8.06 -52.48 -0.42 -0.43 16 40 H 0.16 1.93 5.31 -52.49 -0.28 1.65 16 41 H 0.14 1.72 6.39 -52.49 -0.34 1.39 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -33.24 346.42 -7.70 -40.94 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -4.24 Total: 7.41 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -4.12 Total: -2.18 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.22 Total: -44.67 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.23 Total: -22.33 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.24 -7.70 -40.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148894923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.680 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds