Wall clock time and date at job start Tue Mar 31 2020 15:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47437 * 2 1 4 4 H 1.09001 * 109.46985 * 304.89655 * 3 2 1 5 5 C 1.50694 * 109.47304 * 184.89644 * 3 2 1 6 6 H 1.08000 * 120.00367 * 245.44975 * 5 3 2 7 7 C 1.37879 * 119.99749 * 65.45589 * 5 3 2 8 8 N 1.31507 * 120.00211 * 9.46215 * 7 5 3 9 9 Si 1.86799 * 119.99764 * 189.46832 * 7 5 3 10 10 H 1.48507 * 109.47398 * 84.99161 * 9 7 5 11 11 H 1.48506 * 109.47458 * 204.98997 * 9 7 5 12 12 H 1.48499 * 109.47547 * 324.99039 * 9 7 5 13 13 N 1.46497 * 109.47031 * 64.89457 * 3 2 1 14 14 C 1.34781 * 120.00434 * 275.00072 * 13 3 2 15 15 O 1.21591 * 119.99518 * 0.02562 * 14 13 3 16 16 C 1.47605 * 120.00313 * 180.02562 * 14 13 3 17 17 C 1.39735 * 120.07635 * 180.02562 * 16 14 13 18 18 C 1.37682 * 119.91875 * 180.27447 * 17 16 14 19 19 C 1.39089 * 120.07941 * 359.51984 * 18 17 16 20 20 N 1.39696 * 119.92316 * 180.25873 * 19 18 17 21 21 C 1.34514 * 125.20172 * 179.90153 * 20 19 18 22 22 O 1.21401 * 125.79225 * 359.97438 * 21 20 19 23 23 C 1.47941 * 108.41733 * 179.88406 * 21 20 19 24 24 C 1.34376 * 106.78172 * 0.36739 * 23 21 20 25 25 C 1.34518 * 125.20176 * 0.19487 * 20 19 18 26 26 O 1.21394 * 125.79219 * 359.96909 * 25 20 19 27 27 C 1.39086 * 120.15409 * 0.45476 * 19 18 17 28 28 C 1.37689 * 120.07939 * 359.80168 * 27 19 18 29 29 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46972 * 300.00627 * 1 2 3 31 31 H 1.09008 * 109.46665 * 60.00411 * 1 2 3 32 32 H 1.08997 * 109.47241 * 239.99844 * 2 1 3 33 33 H 1.09002 * 109.47344 * 119.99580 * 2 1 3 34 34 H 0.97003 * 120.00140 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00204 * 95.00617 * 13 3 2 36 36 H 1.07998 * 120.04532 * 359.97438 * 17 16 14 37 37 H 1.08004 * 119.96333 * 179.74740 * 18 17 16 38 38 H 1.07999 * 126.60919 * 180.12454 * 23 21 20 39 39 H 1.08007 * 126.60612 * 179.81756 * 24 23 21 40 40 H 1.07998 * 119.96341 * 179.77247 * 27 19 18 41 41 H 1.07998 * 120.03549 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5421 1.4442 -0.1213 6 1 4.1494 1.8090 0.6939 7 6 4.1413 0.9800 -1.2731 8 7 3.4098 0.7114 -2.3324 9 14 5.9920 0.7327 -1.3287 10 1 6.3291 -0.6068 -0.7832 11 1 6.4621 0.8273 -2.7343 12 1 6.6563 1.7808 -0.5131 13 7 1.6504 2.0982 1.2507 14 6 0.4329 2.6653 1.3635 15 8 -0.3422 2.6322 0.4273 16 6 0.0405 3.3265 2.6235 17 6 -1.2216 3.9144 2.7423 18 6 -1.5821 4.5352 3.9171 19 6 -0.6956 4.5689 4.9884 20 7 -1.0669 5.1949 6.1807 21 6 -0.2972 5.2880 7.2800 22 8 0.8266 4.8447 7.3994 23 6 -1.0518 6.0241 8.3179 24 6 -2.2472 6.3294 7.7854 25 6 -2.2508 5.7921 6.4071 26 8 -3.1666 5.8760 5.6147 27 6 0.5612 3.9842 4.8738 28 6 0.9304 3.3663 3.7001 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8313 0.3845 -3.1427 35 1 2.2686 2.1244 1.9977 36 1 -1.9116 3.8862 1.9120 37 1 -2.5559 4.9934 4.0083 38 1 -0.7095 6.2658 9.3133 39 1 -3.0504 6.8646 8.2701 40 1 1.2485 4.0154 5.7063 41 1 1.9067 2.9129 3.6118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148894923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:39 Heat of formation + Delta-G solvation = -42.221649 kcal Electronic energy + Delta-G solvation = -26867.154541 eV Core-core repulsion = 22906.230285 eV Total energy + Delta-G solvation = -3960.924256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 3.80 seconds Orbital eigenvalues (eV) -43.82749 -41.19790 -40.04045 -39.43742 -37.49358 -36.94287 -34.97677 -34.31348 -33.04553 -32.11703 -30.79894 -28.88581 -26.60122 -25.76417 -24.81537 -24.32666 -22.48506 -21.97017 -21.57071 -21.07505 -19.51135 -19.24436 -18.01320 -17.84733 -17.52016 -17.13789 -17.03004 -16.47248 -16.30469 -15.68204 -15.59421 -15.31274 -15.19443 -15.16023 -14.88124 -14.61267 -14.51942 -14.33931 -14.00616 -13.76767 -13.45921 -13.29774 -12.93104 -12.63478 -12.61855 -12.23066 -12.16740 -12.09052 -11.91089 -11.63935 -11.19467 -11.15795 -11.10971 -10.79387 -10.54335 -10.24489 -9.79848 -9.49923 -8.20553 -6.33790 -1.03668 -0.46726 0.16737 1.04141 1.44030 1.44510 1.45775 1.51772 1.54746 2.01049 2.32779 2.55588 2.74644 2.76988 2.98972 3.11303 3.65672 3.71491 3.78820 3.87445 4.05043 4.13715 4.33297 4.44450 4.51162 4.58482 4.68809 4.74221 4.78286 4.85033 4.95765 5.01079 5.06354 5.17392 5.25901 5.39495 5.48829 5.56445 5.58479 5.63070 5.72916 5.88951 5.95067 6.04535 6.34637 6.73816 6.90905 7.30709 7.48836 8.88340 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021208 B = 0.002640 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.918808 B =10605.093111 C =11551.039201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C 0.276 3.724 4 H 0.005 0.995 5 C -0.551 4.551 6 H 0.073 0.927 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.697 5.697 14 C 0.542 3.458 15 O -0.582 6.582 16 C -0.149 4.149 17 C -0.045 4.045 18 C -0.149 4.149 19 C 0.147 3.853 20 N -0.544 5.544 21 C 0.527 3.473 22 O -0.468 6.468 23 C -0.108 4.108 24 C -0.110 4.110 25 C 0.526 3.474 26 O -0.471 6.471 27 C -0.146 4.146 28 C -0.057 4.057 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.027 0.973 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.137 0.863 37 H 0.161 0.839 38 H 0.234 0.766 39 H 0.233 0.767 40 H 0.165 0.835 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.505 11.639 27.081 30.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.172 3.828 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.346 5.346 14 C 0.329 3.671 15 O -0.464 6.464 16 C -0.152 4.152 17 C -0.065 4.065 18 C -0.168 4.168 19 C 0.055 3.945 20 N -0.279 5.279 21 C 0.319 3.681 22 O -0.340 6.340 23 C -0.129 4.129 24 C -0.130 4.130 25 C 0.319 3.681 26 O -0.343 6.343 27 C -0.166 4.166 28 C -0.076 4.076 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.250 0.750 39 H 0.250 0.750 40 H 0.183 0.817 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.885 11.336 25.839 29.898 hybrid contribution 1.151 -0.452 -0.893 1.525 sum -8.734 10.884 24.946 28.584 Atomic orbital electron populations 1.21694 0.96764 0.99427 1.00413 1.21709 0.94037 0.98893 1.00520 1.18446 0.93930 0.89139 0.81254 0.97683 1.21523 0.91168 1.43939 1.02269 0.90920 1.25771 1.03239 0.94728 0.94501 1.70131 1.37844 1.44632 1.02787 0.85427 0.79134 0.79074 0.77131 1.19487 1.21377 1.18806 1.46198 1.15098 1.55484 1.17791 1.18581 0.82224 0.78625 0.87622 1.90729 1.52611 1.61530 1.41557 1.20153 0.96912 1.03778 0.94385 1.21169 0.94741 0.93175 0.97422 1.21422 1.01445 1.02379 0.91602 1.18092 0.95002 0.96229 0.85176 1.44342 1.18937 1.51200 1.13407 1.20487 0.85309 0.79065 0.83200 1.90730 1.17709 1.44833 1.80694 1.24886 0.92832 0.94705 1.00484 1.24875 1.00760 0.98263 0.89146 1.20518 0.79809 0.76598 0.91218 1.90731 1.37369 1.53420 1.52733 1.21475 0.95495 0.99693 0.99919 1.21403 0.99351 0.95953 0.90938 0.93189 0.93797 0.95386 0.92757 0.93194 0.92568 0.76184 0.84542 0.82193 0.74983 0.75050 0.81745 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.51 71.98 0.61 -5.14 16 2 C -0.11 -5.56 5.50 30.60 0.17 -5.39 16 3 C 0.28 14.39 2.11 44.24 0.09 14.48 16 4 H 0.01 0.33 7.52 -2.39 -0.02 0.31 16 5 C -0.55 -29.45 8.66 25.60 0.22 -29.23 16 6 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 7 C 0.02 0.99 5.16 84.66 0.44 1.43 16 8 N -0.92 -53.58 12.16 21.45 0.26 -53.32 16 9 Si 0.97 42.42 29.55 68.60 2.03 44.44 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 13 N -0.70 -29.92 4.97 -449.20 -2.23 -32.15 16 14 C 0.54 22.99 6.33 86.72 0.55 23.54 16 15 O -0.58 -29.02 13.47 -4.00 -0.05 -29.07 16 16 C -0.15 -5.01 5.88 -20.08 -0.12 -5.13 16 17 C -0.05 -1.42 9.58 22.50 0.22 -1.21 16 18 C -0.15 -4.01 9.32 22.34 0.21 -3.80 16 19 C 0.15 3.63 6.60 38.30 0.25 3.88 16 20 N -0.54 -10.06 2.85 -585.26 -1.67 -11.73 16 21 C 0.53 7.62 7.92 86.86 0.69 8.31 16 22 O -0.47 -9.49 14.99 -3.40 -0.05 -9.54 16 23 C -0.11 -0.23 11.16 23.96 0.27 0.03 16 24 C -0.11 -0.25 11.15 23.96 0.27 0.01 16 25 C 0.53 7.84 7.92 86.85 0.69 8.53 16 26 O -0.47 -9.99 14.99 -3.38 -0.05 -10.04 16 27 C -0.15 -3.68 9.32 22.34 0.21 -3.47 16 28 C -0.06 -1.59 9.53 22.50 0.21 -1.37 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.96 5.65 -2.39 -0.01 1.95 16 31 H 0.03 1.38 7.84 -2.38 -0.02 1.36 16 32 H 0.05 2.96 6.80 -2.39 -0.02 2.94 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.40 14.59 6.55 -92.71 -0.61 13.99 16 36 H 0.14 4.40 7.64 -2.91 -0.02 4.38 16 37 H 0.16 4.15 5.31 -2.91 -0.02 4.13 16 38 H 0.23 -1.52 8.06 -2.91 -0.02 -1.54 16 39 H 0.23 -1.46 8.06 -2.91 -0.02 -1.49 16 40 H 0.17 3.88 5.31 -2.91 -0.02 3.86 16 41 H 0.15 3.66 6.39 -2.91 -0.02 3.64 16 Total: -1.00 -77.29 346.42 3.70 -73.59 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.50 Total: 22.36 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 4.97 Total: 5.47 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -3.64 Total: -97.20 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: -0.16 Total: -48.66 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -77.29 3.70 -73.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148894923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.365 kcal (2) G-P(sol) polarization free energy of solvation -77.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.80 seconds