Wall clock time and date at job start Tue Mar 31 2020 16:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46758 * 124.34859 * 2 1 4 4 C 1.54473 * 105.47577 * 162.98281 * 3 2 1 5 5 C 1.54630 * 101.76577 * 25.41156 * 4 3 2 6 6 H 1.08995 * 110.48852 * 216.39511 * 5 4 3 7 7 N 1.46496 * 110.48540 * 93.88038 * 5 4 3 8 8 C 1.38732 * 120.00302 * 155.00090 * 7 5 4 9 9 C 1.38760 * 120.28741 * 0.02664 * 8 7 5 10 10 C 1.38164 * 120.01901 * 179.97438 * 9 8 7 11 11 C 1.50705 * 119.68383 * 180.02562 * 10 9 8 12 12 F 1.39894 * 109.47171 * 89.99817 * 11 10 9 13 13 F 1.39901 * 109.47137 * 209.99932 * 11 10 9 14 14 F 1.39900 * 109.46869 * 329.99472 * 11 10 9 15 15 C 1.38903 * 120.63023 * 0.02562 * 10 9 8 16 16 C 1.36449 * 120.59628 * 359.69170 * 15 10 9 17 17 C 1.40733 * 119.94753 * 0.56708 * 16 15 10 18 18 C 1.41044 * 120.30238 * 179.74192 * 17 16 15 19 19 H 1.07997 * 120.00050 * 154.29427 * 18 17 16 20 20 C 1.39931 * 120.00043 * 334.01024 * 18 17 16 21 21 N 1.30885 * 119.99941 * 345.25711 * 20 18 17 22 22 Si 1.86805 * 120.00076 * 165.25436 * 20 18 17 23 23 H 1.48495 * 109.46920 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46973 * 120.00277 * 22 20 18 25 25 H 1.48499 * 109.47104 * 240.00401 * 22 20 18 26 26 C 1.34412 * 124.34852 * 179.97438 * 2 1 3 27 27 O 1.21287 * 124.94652 * 0.45265 * 26 2 1 28 28 H 1.09002 * 109.47271 * 90.00339 * 1 2 3 29 29 H 1.08999 * 109.47239 * 210.00836 * 1 2 3 30 30 H 1.09005 * 109.47481 * 330.00504 * 1 2 3 31 31 H 1.09001 * 110.24932 * 43.98294 * 3 2 1 32 32 H 1.09000 * 110.31934 * 282.01938 * 3 2 1 33 33 H 1.09004 * 110.97362 * 267.29592 * 4 3 2 34 34 H 1.08999 * 111.00692 * 143.54873 * 4 3 2 35 35 H 0.96998 * 120.00356 * 335.00531 * 7 5 4 36 36 H 1.07995 * 119.99053 * 359.95040 * 9 8 7 37 37 H 1.07999 * 119.69813 * 179.97438 * 15 10 9 38 38 H 1.07995 * 120.02174 * 180.30025 * 16 15 10 39 39 H 0.96999 * 119.99872 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7009 0.7488 0.4357 5 6 3.6898 -0.7378 0.0102 6 1 4.2345 -1.3455 0.7327 7 7 4.2672 -0.8927 -1.3272 8 6 4.8318 -2.1028 -1.7032 9 6 4.8524 -3.1707 -0.8174 10 6 5.4157 -4.3736 -1.1978 11 6 5.4334 -5.5286 -0.2299 12 9 4.2697 -6.2884 -0.3892 13 9 6.5520 -6.3305 -0.4812 14 9 5.4953 -5.0390 1.0792 15 6 5.9658 -4.5285 -2.4638 16 6 5.9542 -3.4970 -3.3570 17 6 5.3917 -2.2592 -2.9936 18 6 5.3806 -1.1864 -3.9091 19 1 4.6295 -0.4146 -3.8275 20 6 6.3462 -1.1188 -4.9196 21 7 7.4171 -1.8683 -4.8525 22 14 6.1069 0.0412 -6.3642 23 1 4.8247 0.7728 -6.2043 24 1 7.2287 1.0132 -6.4095 25 1 6.0776 -0.7401 -7.6267 26 6 2.2234 -1.1097 0.0005 27 8 1.7946 -2.2443 -0.0069 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5140 30 1 -0.3634 0.8900 0.5138 31 1 1.8984 1.9383 0.7102 32 1 2.3309 1.6443 -0.9998 33 1 3.8268 0.8449 1.5142 34 1 4.4758 1.3009 -0.0961 35 1 4.2548 -0.1491 -1.9499 36 1 4.4284 -3.0614 0.1698 37 1 6.4026 -5.4752 -2.7452 38 1 6.3801 -3.6292 -4.3406 39 1 8.0863 -1.8217 -5.5532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166685491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:13 Heat of formation + Delta-G solvation = -157.138808 kcal Electronic energy + Delta-G solvation = -28624.863637 eV Core-core repulsion = 24117.099459 eV Total energy + Delta-G solvation = -4507.764178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.22919 -46.77667 -46.69326 -40.35268 -38.04860 -36.23937 -34.66508 -33.94265 -31.69889 -30.20022 -28.16265 -26.91666 -26.69295 -25.93262 -23.61577 -22.06597 -20.67795 -20.48419 -19.26808 -17.70043 -17.56668 -17.51317 -17.32742 -16.49192 -16.29275 -15.59416 -15.29579 -14.79968 -14.39642 -14.08428 -13.73404 -13.65097 -13.61059 -13.55850 -13.21752 -12.98568 -12.92457 -12.91221 -12.76039 -12.52852 -12.46390 -12.30441 -12.11490 -11.95060 -11.48125 -11.40676 -11.21603 -11.16267 -10.87692 -10.57403 -10.08370 -9.81688 -9.74170 -9.38209 -8.95183 -8.63640 -7.65135 -6.97223 -6.52668 -4.43721 2.44527 2.76056 2.96596 2.98676 3.01329 3.02011 3.14138 3.72003 3.78614 4.30760 4.41431 4.46484 4.55058 4.86125 4.99574 5.07832 5.13206 5.22811 5.29402 5.37603 5.40897 5.65297 5.67030 5.69900 5.83868 5.89820 6.23797 6.35808 6.58268 6.74780 6.87623 7.01284 7.19960 7.22992 7.36243 7.56167 7.83475 7.92151 8.17623 8.41213 8.44770 8.58277 8.71339 8.85246 10.01737 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.007165 B = 0.006820 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3907.117601 B = 4104.437950 C = 7338.609578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.629 5.629 3 C 0.105 3.895 4 C -0.143 4.143 5 C 0.131 3.869 6 H 0.107 0.893 7 N -0.723 5.723 8 C 0.100 3.900 9 C -0.109 4.109 10 C -0.274 4.274 11 C 0.514 3.486 12 F -0.194 7.194 13 F -0.193 7.193 14 F -0.194 7.194 15 C -0.084 4.084 16 C -0.150 4.150 17 C 0.097 3.903 18 C -0.451 4.451 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.784 5.784 22 Si 0.910 3.090 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.271 1.271 26 C 0.499 3.501 27 O -0.516 6.516 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.401 0.599 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.128 0.872 39 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.760 7.511 6.400 11.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.366 5.366 3 C -0.018 4.018 4 C -0.181 4.181 5 C 0.020 3.980 6 H 0.124 0.876 7 N -0.360 5.360 8 C 0.002 3.998 9 C -0.133 4.133 10 C -0.277 4.277 11 C 0.461 3.539 12 F -0.175 7.175 13 F -0.175 7.175 14 F -0.176 7.176 15 C -0.104 4.104 16 C -0.171 4.171 17 C 0.092 3.908 18 C -0.480 4.480 19 H 0.095 0.905 20 C -0.143 4.143 21 N -0.409 5.409 22 Si 0.734 3.266 23 H -0.185 1.185 24 H -0.199 1.199 25 H -0.196 1.196 26 C 0.284 3.716 27 O -0.389 6.389 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.237 0.763 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.146 0.854 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.886 6.761 6.448 11.042 hybrid contribution -0.149 0.630 -0.726 0.973 sum -6.035 7.391 5.722 11.126 Atomic orbital electron populations 1.21475 0.78735 1.02582 1.01640 1.48204 1.06114 1.07605 1.74691 1.22053 0.90718 0.87315 1.01731 1.22921 0.96794 0.95633 1.02764 1.21285 0.90668 0.96689 0.89357 0.87571 1.43553 1.66180 1.13390 1.12886 1.17609 1.02953 0.85740 0.93516 1.19705 1.03318 0.91875 0.98354 1.18819 1.18796 0.93563 0.96552 1.18594 0.72553 0.83104 0.79697 1.93141 1.50343 1.78501 1.95536 1.93088 1.53820 1.76401 1.94148 1.93078 1.96139 1.87935 1.40443 1.20038 0.99286 0.98637 0.92433 1.20769 1.05426 0.91267 0.99615 1.17382 0.91137 0.93281 0.88951 1.19322 1.11363 1.07325 1.09998 0.90506 1.25885 0.93802 0.96004 0.98658 1.69827 1.06018 1.33569 1.31448 0.86230 0.79443 0.80152 0.80761 1.18477 1.19900 1.19587 1.21987 0.90381 0.84331 0.74881 1.90721 1.78651 1.21093 1.48388 0.92922 0.90925 0.91461 0.90595 0.91187 0.89143 0.88216 0.76263 0.87920 0.88529 0.85438 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.05 10.96 59.85 0.66 1.71 16 2 N -0.63 -8.29 3.33 -180.29 -0.60 -8.89 16 3 C 0.11 1.01 7.35 -3.13 -0.02 0.99 16 4 C -0.14 -1.48 6.78 -25.10 -0.17 -1.65 16 5 C 0.13 2.06 2.99 -67.94 -0.20 1.86 16 6 H 0.11 1.74 6.40 -51.93 -0.33 1.41 16 7 N -0.72 -13.54 5.17 -51.75 -0.27 -13.81 16 8 C 0.10 2.28 6.68 -83.29 -0.56 1.72 16 9 C -0.11 -2.52 8.55 -39.42 -0.34 -2.86 16 10 C -0.27 -6.39 5.47 -104.40 -0.57 -6.96 16 11 C 0.51 11.05 3.36 36.01 0.12 11.17 16 12 F -0.19 -4.17 17.30 2.25 0.04 -4.13 16 13 F -0.19 -3.98 16.43 2.25 0.04 -3.94 16 14 F -0.19 -4.02 16.43 2.25 0.04 -3.99 16 15 C -0.08 -1.99 9.31 -39.98 -0.37 -2.37 16 16 C -0.15 -3.75 8.62 -39.28 -0.34 -4.09 16 17 C 0.10 2.40 5.58 -106.64 -0.60 1.81 16 18 C -0.45 -10.68 8.51 -37.89 -0.32 -11.00 16 19 H 0.08 1.71 6.68 -52.49 -0.35 1.36 16 20 C 0.08 1.73 5.19 -17.32 -0.09 1.64 16 21 N -0.78 -18.75 10.87 55.55 0.60 -18.15 16 22 Si 0.91 17.16 29.59 -169.99 -5.03 12.13 16 23 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 24 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 25 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 26 C 0.50 8.66 7.66 -10.86 -0.08 8.58 16 27 O -0.52 -11.27 17.60 5.55 0.10 -11.17 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.86 7.93 -51.93 -0.41 0.44 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.96 8.07 -51.93 -0.42 0.54 16 35 H 0.40 7.11 6.86 -40.82 -0.28 6.83 16 36 H 0.10 2.29 5.72 -52.49 -0.30 1.99 16 37 H 0.10 2.11 7.57 -52.49 -0.40 1.72 16 38 H 0.13 3.24 6.15 -52.49 -0.32 2.92 16 39 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -29.33 339.45 -6.92 -36.25 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.06 Total: 10.05 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.89 Total: 0.54 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -0.26 Total: -40.85 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.10 Total: -11.17 kcal Atomic # 9 Polarization: -12.18 SS G_CDS: 0.11 Total: -12.06 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.33 -6.92 -36.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166685491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.888 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds