Wall clock time and date at job start Tue Mar 31 2020 16:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46758 * 124.34859 * 2 1 4 4 C 1.54473 * 105.47577 * 162.98281 * 3 2 1 5 5 C 1.54630 * 101.76577 * 25.41156 * 4 3 2 6 6 H 1.08995 * 110.48852 * 216.39511 * 5 4 3 7 7 N 1.46496 * 110.48540 * 93.88038 * 5 4 3 8 8 C 1.38732 * 120.00302 * 155.00090 * 7 5 4 9 9 C 1.38760 * 120.28741 * 0.02664 * 8 7 5 10 10 C 1.38164 * 120.01901 * 179.97438 * 9 8 7 11 11 C 1.50705 * 119.68383 * 180.02562 * 10 9 8 12 12 F 1.39894 * 109.47171 * 89.99817 * 11 10 9 13 13 F 1.39901 * 109.47137 * 209.99932 * 11 10 9 14 14 F 1.39900 * 109.46869 * 329.99472 * 11 10 9 15 15 C 1.38903 * 120.63023 * 0.02562 * 10 9 8 16 16 C 1.36449 * 120.59628 * 359.69170 * 15 10 9 17 17 C 1.40733 * 119.94753 * 0.56708 * 16 15 10 18 18 C 1.41044 * 120.30238 * 179.74192 * 17 16 15 19 19 H 1.07997 * 120.00050 * 154.29427 * 18 17 16 20 20 C 1.39931 * 120.00043 * 334.01024 * 18 17 16 21 21 N 1.30885 * 119.99941 * 345.25711 * 20 18 17 22 22 Si 1.86805 * 120.00076 * 165.25436 * 20 18 17 23 23 H 1.48495 * 109.46920 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46973 * 120.00277 * 22 20 18 25 25 H 1.48499 * 109.47104 * 240.00401 * 22 20 18 26 26 C 1.34412 * 124.34852 * 179.97438 * 2 1 3 27 27 O 1.21287 * 124.94652 * 0.45265 * 26 2 1 28 28 H 1.09002 * 109.47271 * 90.00339 * 1 2 3 29 29 H 1.08999 * 109.47239 * 210.00836 * 1 2 3 30 30 H 1.09005 * 109.47481 * 330.00504 * 1 2 3 31 31 H 1.09001 * 110.24932 * 43.98294 * 3 2 1 32 32 H 1.09000 * 110.31934 * 282.01938 * 3 2 1 33 33 H 1.09004 * 110.97362 * 267.29592 * 4 3 2 34 34 H 1.08999 * 111.00692 * 143.54873 * 4 3 2 35 35 H 0.96998 * 120.00356 * 335.00531 * 7 5 4 36 36 H 1.07995 * 119.99053 * 359.95040 * 9 8 7 37 37 H 1.07999 * 119.69813 * 179.97438 * 15 10 9 38 38 H 1.07995 * 120.02174 * 180.30025 * 16 15 10 39 39 H 0.96999 * 119.99872 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7009 0.7488 0.4357 5 6 3.6898 -0.7378 0.0102 6 1 4.2345 -1.3455 0.7327 7 7 4.2672 -0.8927 -1.3272 8 6 4.8318 -2.1028 -1.7032 9 6 4.8524 -3.1707 -0.8174 10 6 5.4157 -4.3736 -1.1978 11 6 5.4334 -5.5286 -0.2299 12 9 4.2697 -6.2884 -0.3892 13 9 6.5520 -6.3305 -0.4812 14 9 5.4953 -5.0390 1.0792 15 6 5.9658 -4.5285 -2.4638 16 6 5.9542 -3.4970 -3.3570 17 6 5.3917 -2.2592 -2.9936 18 6 5.3806 -1.1864 -3.9091 19 1 4.6295 -0.4146 -3.8275 20 6 6.3462 -1.1188 -4.9196 21 7 7.4171 -1.8683 -4.8525 22 14 6.1069 0.0412 -6.3642 23 1 4.8247 0.7728 -6.2043 24 1 7.2287 1.0132 -6.4095 25 1 6.0776 -0.7401 -7.6267 26 6 2.2234 -1.1097 0.0005 27 8 1.7946 -2.2443 -0.0069 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5140 30 1 -0.3634 0.8900 0.5138 31 1 1.8984 1.9383 0.7102 32 1 2.3309 1.6443 -0.9998 33 1 3.8268 0.8449 1.5142 34 1 4.4758 1.3009 -0.0961 35 1 4.2548 -0.1491 -1.9499 36 1 4.4284 -3.0614 0.1698 37 1 6.4026 -5.4752 -2.7452 38 1 6.3801 -3.6292 -4.3406 39 1 8.0863 -1.8217 -5.5532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166685491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:11 Heat of formation + Delta-G solvation = -174.243977 kcal Electronic energy + Delta-G solvation = -28625.605373 eV Core-core repulsion = 24117.099459 eV Total energy + Delta-G solvation = -4508.505914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -50.95824 -48.48472 -48.43081 -41.56905 -39.76646 -37.54830 -36.08634 -35.71316 -32.98177 -31.90084 -29.70939 -28.45856 -28.01312 -27.08442 -25.36106 -23.38603 -22.24499 -22.09714 -20.49122 -19.39312 -19.28861 -19.25752 -19.05057 -17.74038 -17.52397 -17.12739 -16.64958 -16.31982 -15.81075 -15.66920 -15.33380 -15.30536 -14.93694 -14.88376 -14.74027 -14.64572 -14.63289 -14.52609 -14.27942 -14.01638 -13.74484 -13.65336 -13.43996 -13.11738 -13.01973 -12.92660 -12.72263 -12.27729 -12.21259 -12.06054 -11.66344 -11.57864 -11.44232 -11.10975 -10.47751 -9.68818 -9.51006 -8.70663 -8.22759 -6.24125 0.64672 1.17440 1.42803 1.46755 1.48472 1.56982 1.96790 2.10348 2.20221 2.64092 2.92413 3.24767 3.39154 3.41453 3.51040 3.55628 3.86526 3.96838 4.19504 4.34353 4.40661 4.52493 4.53310 4.64115 4.74024 4.84043 4.97686 5.02942 5.07235 5.12941 5.25553 5.43462 5.53965 5.62126 5.77666 5.98984 6.07323 6.12997 6.38537 6.68703 6.82620 6.99957 7.14006 7.21574 8.30925 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.007165 B = 0.006820 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3907.117601 B = 4104.437950 C = 7338.609578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.621 5.621 3 C 0.101 3.899 4 C -0.128 4.128 5 C 0.122 3.878 6 H 0.093 0.907 7 N -0.717 5.717 8 C 0.103 3.897 9 C -0.124 4.124 10 C -0.286 4.286 11 C 0.521 3.479 12 F -0.194 7.194 13 F -0.187 7.187 14 F -0.189 7.189 15 C -0.093 4.093 16 C -0.173 4.173 17 C 0.069 3.931 18 C -0.467 4.467 19 H 0.088 0.912 20 C 0.037 3.963 21 N -0.815 5.815 22 Si 0.983 3.017 23 H -0.253 1.253 24 H -0.266 1.266 25 H -0.272 1.272 26 C 0.486 3.514 27 O -0.576 6.576 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.405 0.595 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.479 10.578 6.652 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.356 5.356 3 C -0.020 4.020 4 C -0.166 4.166 5 C 0.012 3.988 6 H 0.111 0.889 7 N -0.353 5.353 8 C 0.003 3.997 9 C -0.148 4.148 10 C -0.290 4.290 11 C 0.467 3.533 12 F -0.175 7.175 13 F -0.168 7.168 14 F -0.170 7.170 15 C -0.112 4.112 16 C -0.194 4.194 17 C 0.064 3.936 18 C -0.496 4.496 19 H 0.106 0.894 20 C -0.179 4.179 21 N -0.440 5.440 22 Si 0.804 3.196 23 H -0.176 1.176 24 H -0.191 1.191 25 H -0.198 1.198 26 C 0.272 3.728 27 O -0.454 6.454 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.242 0.758 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.625 9.904 6.729 13.685 hybrid contribution 0.042 -0.277 -0.759 0.809 sum -6.583 9.627 5.970 13.102 Atomic orbital electron populations 1.21681 0.77292 1.03888 1.02102 1.48367 1.07283 1.07631 1.72300 1.22386 0.89620 0.86386 1.03621 1.22970 0.97881 0.91209 1.04532 1.21509 0.89482 1.00458 0.87401 0.88939 1.43583 1.65480 1.11979 1.14298 1.17752 1.01951 0.87136 0.92861 1.19823 1.04022 0.92189 0.98775 1.19037 1.18686 0.94365 0.96864 1.18318 0.72692 0.82688 0.79586 1.93137 1.50442 1.78406 1.95565 1.93097 1.53462 1.76130 1.94134 1.93083 1.96123 1.87907 1.39922 1.20148 0.99595 0.98885 0.92609 1.20755 1.06904 0.92196 0.99500 1.17728 0.91984 0.93716 0.90136 1.19595 1.11940 1.07420 1.10596 0.89441 1.26734 0.93036 0.97417 1.00752 1.69889 1.06809 1.34795 1.32468 0.85132 0.79728 0.77968 0.76797 1.17628 1.19081 1.19756 1.22256 0.91474 0.84432 0.74656 1.90679 1.79687 1.23561 1.51503 0.92891 0.92605 0.87180 0.86414 0.90202 0.86479 0.86939 0.75761 0.87608 0.87495 0.86702 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.77 10.96 127.77 1.40 3.17 16 2 N -0.62 -14.95 3.33 -842.92 -2.81 -17.76 16 3 C 0.10 1.53 7.35 86.83 0.64 2.17 16 4 C -0.13 -2.22 6.78 31.65 0.21 -2.01 16 5 C 0.12 3.72 2.99 44.99 0.13 3.86 16 6 H 0.09 3.06 6.40 -2.39 -0.02 3.04 16 7 N -0.72 -26.65 5.17 -317.65 -1.64 -28.29 16 8 C 0.10 4.79 6.68 38.99 0.26 5.05 16 9 C -0.12 -5.90 8.55 22.38 0.19 -5.71 16 10 C -0.29 -13.70 5.47 -19.72 -0.11 -13.80 16 11 C 0.52 22.61 3.36 71.24 0.24 22.85 16 12 F -0.19 -8.44 17.30 44.97 0.78 -7.66 16 13 F -0.19 -7.70 16.43 44.97 0.74 -6.96 16 14 F -0.19 -7.85 16.43 44.97 0.74 -7.11 16 15 C -0.09 -4.53 9.31 22.01 0.21 -4.33 16 16 C -0.17 -8.95 8.62 22.46 0.19 -8.75 16 17 C 0.07 3.51 5.58 -21.17 -0.12 3.39 16 18 C -0.47 -22.20 8.51 23.37 0.20 -22.00 16 19 H 0.09 3.83 6.68 -2.91 -0.02 3.81 16 20 C 0.04 1.69 5.19 85.24 0.44 2.13 16 21 N -0.81 -39.43 10.87 21.83 0.24 -39.19 16 22 Si 0.98 34.38 29.59 68.60 2.03 36.41 16 23 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 24 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 25 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 26 C 0.49 16.72 7.66 87.90 0.67 17.40 16 27 O -0.58 -26.00 17.60 -3.05 -0.05 -26.06 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.28 7.93 -2.39 -0.02 1.26 16 30 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.11 1.74 8.07 -2.39 -0.02 1.72 16 35 H 0.40 13.98 6.86 -92.71 -0.64 13.34 16 36 H 0.11 4.87 5.72 -2.91 -0.02 4.86 16 37 H 0.11 4.83 7.57 -2.91 -0.02 4.81 16 38 H 0.12 6.12 6.15 -2.91 -0.02 6.10 16 39 H 0.29 12.71 8.30 -92.71 -0.77 11.94 16 Total: -1.00 -66.59 339.45 5.07 -61.52 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.49 Total: 31.70 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 4.57 Total: 3.41 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -4.22 Total: -85.24 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 9 Polarization: -23.99 SS G_CDS: 2.26 Total: -21.73 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal Total: -66.59 5.07 -61.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166685491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.723 kcal (2) G-P(sol) polarization free energy of solvation -66.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds