Wall clock time and date at job start Tue Mar 31 2020 16:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45196 * 109.46929 * 2 1 4 4 C 1.34773 * 117.00254 * 180.02562 * 3 2 1 5 5 O 1.21539 * 119.99359 * 0.02562 * 4 3 2 6 6 C 1.47227 * 120.00160 * 179.97438 * 4 3 2 7 7 C 1.36541 * 127.24662 * 0.02758 * 6 4 3 8 8 O 1.33587 * 108.38265 * 179.97438 * 7 6 4 9 9 C 1.34509 * 111.04650 * 0.02562 * 8 7 6 10 10 C 1.34215 * 108.72810 * 359.68542 * 9 8 7 11 11 C 1.50851 * 109.27331 * 180.37208 * 10 9 8 12 12 N 1.48173 * 105.44578 * 17.30943 * 11 10 9 13 13 C 1.39072 * 111.00471 * 214.26711 * 12 11 10 14 14 C 1.38742 * 119.65991 * 179.72956 * 13 12 11 15 15 C 1.40780 * 118.66867 * 179.75950 * 14 13 12 16 16 C 1.41558 * 120.99717 * 180.25498 * 15 14 13 17 17 H 1.07989 * 120.00039 * 203.51850 * 16 15 14 18 18 C 1.40027 * 119.99366 * 23.51879 * 16 15 14 19 19 N 1.30752 * 120.00071 * 17.01704 * 18 16 15 20 20 Si 1.86798 * 120.00013 * 197.01043 * 18 16 15 21 21 H 1.48505 * 109.46740 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47081 * 120.00267 * 20 18 16 23 23 H 1.48496 * 109.47157 * 240.00571 * 20 18 16 24 24 C 1.41195 * 118.01119 * 0.50344 * 15 14 13 25 25 C 1.36550 * 119.14875 * 359.75006 * 24 15 14 26 26 N 1.32099 * 121.26334 * 359.97438 * 25 24 15 27 27 C 1.48421 * 103.08603 * 332.89821 * 12 11 10 28 28 H 1.08997 * 109.46935 * 299.99927 * 1 2 3 29 29 H 1.08997 * 109.47329 * 60.00198 * 1 2 3 30 30 H 1.08997 * 109.46618 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46744 * 240.00339 * 2 1 3 32 32 H 1.09001 * 109.47138 * 120.00264 * 2 1 3 33 33 H 1.07994 * 125.80308 * 0.02562 * 7 6 4 34 34 H 1.08998 * 110.25242 * 136.30524 * 11 10 9 35 35 H 1.09003 * 110.24685 * 258.31590 * 11 10 9 36 36 H 1.07996 * 120.66771 * 0.02562 * 14 13 12 37 37 H 0.96995 * 119.99654 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.42368 * 179.73766 * 24 15 14 39 39 H 1.07995 * 119.36725 * 180.02562 * 25 24 15 40 40 H 1.09003 * 110.81511 * 267.97526 * 27 12 11 41 41 H 1.08996 * 109.72681 * 145.97591 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5456 -0.0005 5 8 4.0904 0.5817 -0.0015 6 6 3.9127 2.9061 -0.0011 7 6 3.2242 4.0852 -0.0007 8 8 4.1064 5.0883 -0.0010 9 6 5.3681 4.6220 -0.0021 10 6 5.3316 3.2803 0.0043 11 6 6.7415 2.7439 0.0124 12 7 7.5936 3.8801 0.4350 13 6 8.8301 3.8390 -0.2000 14 6 9.7696 4.8258 0.0619 15 6 11.0164 4.7611 -0.5885 16 6 12.0129 5.7388 -0.3536 17 1 12.7807 5.9154 -1.0922 18 6 12.0028 6.4767 0.8364 19 7 11.3047 6.0578 1.8595 20 14 12.9868 8.0594 0.9623 21 1 13.6845 8.3121 -0.3241 22 1 12.0704 9.1898 1.2582 23 1 13.9874 7.9348 2.0524 24 6 11.2414 3.6948 -1.4863 25 6 10.2540 2.7727 -1.6846 26 7 9.0971 2.8606 -1.0531 27 6 6.8155 5.0652 -0.0042 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.1492 4.1891 0.0005 34 1 6.8285 1.9222 0.7232 35 1 7.0242 2.4113 -0.9864 36 1 9.5504 5.6252 0.7542 37 1 11.2980 6.5687 2.6839 38 1 12.1823 3.6098 -2.0097 39 1 10.4225 1.9555 -2.3702 40 1 7.1134 5.3746 -1.0061 41 1 6.9603 5.8828 0.7019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167175564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:44 Heat of formation + Delta-G solvation = 3.057486 kcal Electronic energy + Delta-G solvation = -26741.149864 eV Core-core repulsion = 22782.189059 eV Total energy + Delta-G solvation = -3958.960805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.81746 -40.21699 -39.38504 -37.17525 -36.59373 -34.17669 -32.96306 -31.93422 -31.02515 -30.47979 -28.06738 -27.65938 -25.94850 -24.87237 -23.66467 -22.65552 -21.83730 -20.33221 -20.28843 -19.97724 -17.78848 -17.34874 -17.00493 -16.82965 -16.36082 -15.87117 -15.63629 -15.12583 -14.77439 -14.65308 -14.28756 -14.22038 -14.06829 -13.42131 -13.21261 -13.08639 -12.81940 -12.67007 -12.25022 -12.21806 -12.08585 -11.84954 -11.68378 -11.49861 -11.38297 -11.22726 -10.89828 -10.73903 -10.64893 -10.32573 -10.17958 -9.79511 -9.50435 -9.24967 -8.38626 -8.10122 -8.01618 -7.19697 -6.91001 -4.67478 1.06847 1.94421 2.17587 2.46591 2.66063 2.74526 2.99517 3.01920 3.04429 3.15860 3.80448 4.09160 4.32907 4.51296 4.60718 4.65118 4.71027 4.77988 4.98792 5.07261 5.37125 5.43297 5.43991 5.46692 5.61543 5.66228 5.71071 5.82826 5.92468 6.00692 6.18095 6.26501 6.40368 6.53235 6.66184 6.76741 6.86972 6.96360 7.08518 7.18622 7.41150 7.50371 7.71338 7.81549 8.12117 8.44661 8.66096 8.67338 9.44484 9.99709 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.002611 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.664906 B =10721.959574 C =11507.468338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.360 6.360 4 C 0.537 3.463 5 O -0.496 6.496 6 C -0.200 4.200 7 C 0.052 3.948 8 O -0.148 6.148 9 C -0.045 4.045 10 C -0.145 4.145 11 C 0.104 3.896 12 N -0.430 5.430 13 C 0.265 3.735 14 C -0.203 4.203 15 C 0.134 3.866 16 C -0.450 4.450 17 H 0.084 0.916 18 C 0.076 3.924 19 N -0.775 5.775 20 Si 0.911 3.089 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.273 1.273 24 C -0.277 4.277 25 C 0.118 3.882 26 N -0.599 5.599 27 C 0.141 3.859 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.225 0.775 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.133 0.867 37 H 0.285 0.715 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.369 -2.481 -1.898 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.278 6.278 4 C 0.382 3.618 5 O -0.384 6.384 6 C -0.203 4.203 7 C -0.019 4.019 8 O -0.042 6.042 9 C -0.095 4.095 10 C -0.147 4.147 11 C -0.023 4.023 12 N -0.150 5.150 13 C 0.041 3.959 14 C -0.228 4.228 15 C 0.125 3.875 16 C -0.481 4.481 17 H 0.102 0.898 18 C -0.145 4.145 19 N -0.399 5.399 20 Si 0.735 3.265 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.300 4.300 25 C -0.036 4.036 26 N -0.319 5.319 27 C 0.015 3.985 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.242 0.758 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.150 0.850 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.811 -3.086 -1.203 18.117 hybrid contribution 0.869 0.832 -0.336 1.249 sum -16.942 -2.254 -1.539 17.160 Atomic orbital electron populations 1.21808 0.92552 1.03024 1.03491 1.23030 0.95207 0.79928 1.02878 1.86512 1.23829 1.32621 1.84886 1.19988 0.80257 0.88601 0.72976 1.90881 1.60251 1.41938 1.45286 1.19672 0.91950 0.90918 1.17788 1.24706 0.95090 0.83509 0.98566 1.83517 1.14082 1.35987 1.70633 1.23070 0.86019 0.93478 1.06921 1.22135 0.93722 0.94782 1.04074 1.21014 0.83409 0.94170 1.03691 1.63422 1.00700 1.01521 1.49363 1.19365 0.90424 0.93596 0.92508 1.21686 0.93058 1.01255 1.06804 1.17730 0.91377 0.89931 0.88425 1.19652 1.10377 1.15721 1.02329 0.89821 1.26017 0.94993 0.98569 0.94880 1.69795 1.32401 1.35575 1.02171 0.86206 0.79845 0.80917 0.79532 1.18232 1.19473 1.19777 1.21605 1.00390 0.99099 1.08935 1.21353 0.89036 0.96907 0.96263 1.67025 1.23736 1.27632 1.13508 1.21364 0.79964 0.95222 1.01951 0.91449 0.91467 0.90174 0.91082 0.91072 0.75829 0.89095 0.88098 0.84980 0.90408 0.87963 0.86054 0.90198 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.58 6.20 37.16 0.23 0.81 16 3 O -0.36 -4.21 10.07 -40.69 -0.41 -4.62 16 4 C 0.54 8.04 7.95 34.38 0.27 8.31 16 5 O -0.50 -8.95 16.77 -19.30 -0.32 -9.27 16 6 C -0.20 -2.99 6.31 -103.43 -0.65 -3.65 16 7 C 0.05 0.60 11.95 30.12 0.36 0.96 16 8 O -0.15 -2.06 10.52 7.02 0.07 -1.99 16 9 C -0.05 -0.75 8.32 -35.39 -0.29 -1.04 16 10 C -0.15 -2.56 7.16 -102.53 -0.73 -3.30 16 11 C 0.10 2.07 6.27 -4.20 -0.03 2.05 16 12 N -0.43 -9.04 5.58 -173.20 -0.97 -10.00 16 13 C 0.27 6.28 6.03 -154.99 -0.94 5.34 16 14 C -0.20 -5.10 8.24 -38.44 -0.32 -5.42 16 15 C 0.13 3.43 5.61 -106.55 -0.60 2.83 16 16 C -0.45 -11.27 9.12 -37.65 -0.34 -11.62 16 17 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 18 C 0.08 1.81 5.20 -17.34 -0.09 1.72 16 19 N -0.78 -19.10 10.91 55.55 0.61 -18.49 16 20 Si 0.91 17.56 29.59 -169.99 -5.03 12.53 16 21 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 22 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 24 C -0.28 -6.53 9.85 -39.07 -0.38 -6.92 16 25 C 0.12 2.66 11.10 -18.05 -0.20 2.46 16 26 N -0.60 -14.18 8.13 -12.83 -0.10 -14.29 16 27 C 0.14 2.52 6.19 -3.80 -0.02 2.49 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.23 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 35 H 0.10 2.15 6.54 -51.93 -0.34 1.81 16 36 H 0.13 3.39 6.19 -52.49 -0.32 3.06 16 37 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 38 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.08 1.42 7.80 -51.93 -0.41 1.01 16 41 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -30.05 356.57 -8.98 -39.03 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -4.85 Total: 7.21 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -3.35 Total: -5.49 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.46 Total: -42.78 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.66 Total: -15.88 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.05 -8.98 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167175564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.091 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds