Wall clock time and date at job start Tue Mar 31 2020 16:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45196 * 109.46929 * 2 1 4 4 C 1.34773 * 117.00254 * 180.02562 * 3 2 1 5 5 O 1.21539 * 119.99359 * 0.02562 * 4 3 2 6 6 C 1.47227 * 120.00160 * 179.97438 * 4 3 2 7 7 C 1.36541 * 127.24662 * 0.02758 * 6 4 3 8 8 O 1.33587 * 108.38265 * 179.97438 * 7 6 4 9 9 C 1.34509 * 111.04650 * 0.02562 * 8 7 6 10 10 C 1.34215 * 108.72810 * 359.68542 * 9 8 7 11 11 C 1.50851 * 109.27331 * 180.37208 * 10 9 8 12 12 N 1.48173 * 105.44578 * 17.30943 * 11 10 9 13 13 C 1.39072 * 111.00471 * 214.26711 * 12 11 10 14 14 C 1.38742 * 119.65991 * 179.72956 * 13 12 11 15 15 C 1.40780 * 118.66867 * 179.75950 * 14 13 12 16 16 C 1.41558 * 120.99717 * 180.25498 * 15 14 13 17 17 H 1.07989 * 120.00039 * 203.51850 * 16 15 14 18 18 C 1.40027 * 119.99366 * 23.51879 * 16 15 14 19 19 N 1.30752 * 120.00071 * 17.01704 * 18 16 15 20 20 Si 1.86798 * 120.00013 * 197.01043 * 18 16 15 21 21 H 1.48505 * 109.46740 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47081 * 120.00267 * 20 18 16 23 23 H 1.48496 * 109.47157 * 240.00571 * 20 18 16 24 24 C 1.41195 * 118.01119 * 0.50344 * 15 14 13 25 25 C 1.36550 * 119.14875 * 359.75006 * 24 15 14 26 26 N 1.32099 * 121.26334 * 359.97438 * 25 24 15 27 27 C 1.48421 * 103.08603 * 332.89821 * 12 11 10 28 28 H 1.08997 * 109.46935 * 299.99927 * 1 2 3 29 29 H 1.08997 * 109.47329 * 60.00198 * 1 2 3 30 30 H 1.08997 * 109.46618 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46744 * 240.00339 * 2 1 3 32 32 H 1.09001 * 109.47138 * 120.00264 * 2 1 3 33 33 H 1.07994 * 125.80308 * 0.02562 * 7 6 4 34 34 H 1.08998 * 110.25242 * 136.30524 * 11 10 9 35 35 H 1.09003 * 110.24685 * 258.31590 * 11 10 9 36 36 H 1.07996 * 120.66771 * 0.02562 * 14 13 12 37 37 H 0.96995 * 119.99654 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.42368 * 179.73766 * 24 15 14 39 39 H 1.07995 * 119.36725 * 180.02562 * 25 24 15 40 40 H 1.09003 * 110.81511 * 267.97526 * 27 12 11 41 41 H 1.08996 * 109.72681 * 145.97591 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5456 -0.0005 5 8 4.0904 0.5817 -0.0015 6 6 3.9127 2.9061 -0.0011 7 6 3.2242 4.0852 -0.0007 8 8 4.1064 5.0883 -0.0010 9 6 5.3681 4.6220 -0.0021 10 6 5.3316 3.2803 0.0043 11 6 6.7415 2.7439 0.0124 12 7 7.5936 3.8801 0.4350 13 6 8.8301 3.8390 -0.2000 14 6 9.7696 4.8258 0.0619 15 6 11.0164 4.7611 -0.5885 16 6 12.0129 5.7388 -0.3536 17 1 12.7807 5.9154 -1.0922 18 6 12.0028 6.4767 0.8364 19 7 11.3047 6.0578 1.8595 20 14 12.9868 8.0594 0.9623 21 1 13.6845 8.3121 -0.3241 22 1 12.0704 9.1898 1.2582 23 1 13.9874 7.9348 2.0524 24 6 11.2414 3.6948 -1.4863 25 6 10.2540 2.7727 -1.6846 26 7 9.0971 2.8606 -1.0531 27 6 6.8155 5.0652 -0.0042 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.1492 4.1891 0.0005 34 1 6.8285 1.9222 0.7232 35 1 7.0242 2.4113 -0.9864 36 1 9.5504 5.6252 0.7542 37 1 11.2980 6.5687 2.6839 38 1 12.1823 3.6098 -2.0097 39 1 10.4225 1.9555 -2.3702 40 1 7.1134 5.3746 -1.0061 41 1 6.9603 5.8828 0.7019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167175564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:43 Heat of formation + Delta-G solvation = -14.009341 kcal Electronic energy + Delta-G solvation = -26741.889937 eV Core-core repulsion = 22782.189059 eV Total energy + Delta-G solvation = -3959.700878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.02383 -41.29857 -41.06648 -38.81540 -37.66922 -35.99481 -34.20076 -32.97433 -32.52594 -31.97096 -29.65700 -29.20885 -27.77564 -25.89139 -25.06391 -23.65005 -23.50481 -22.07298 -21.40692 -21.29040 -19.45613 -18.62357 -18.20561 -17.95774 -17.57974 -17.30350 -17.02106 -16.62252 -16.34180 -16.19876 -16.03980 -15.38731 -15.11127 -14.94477 -14.48314 -14.42674 -14.20597 -13.99564 -13.73504 -13.48447 -13.29596 -13.06539 -12.96527 -12.89789 -12.77972 -12.61447 -12.52031 -12.04896 -11.90203 -11.82511 -11.56852 -11.32373 -11.14923 -10.71284 -10.04663 -9.96741 -9.60949 -8.95639 -8.70584 -6.58507 0.01577 0.61572 0.68607 0.95599 1.14992 1.41048 1.48325 1.54282 1.57172 1.86794 2.18837 2.58851 2.72459 3.16994 3.43830 3.45568 3.63884 3.93449 4.00802 4.03290 4.09120 4.16666 4.18990 4.35689 4.46582 4.51294 4.52708 4.72868 4.81838 4.85998 4.88649 4.94812 4.97322 4.98707 5.11228 5.12205 5.21755 5.36967 5.38333 5.56420 5.71594 5.79069 5.93065 6.26164 6.59021 6.62676 6.78959 6.79362 7.60258 8.23189 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.002611 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.664906 B =10721.959574 C =11507.468338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.347 6.347 4 C 0.542 3.458 5 O -0.540 6.540 6 C -0.233 4.233 7 C 0.106 3.894 8 O -0.141 6.141 9 C -0.045 4.045 10 C -0.168 4.168 11 C 0.111 3.889 12 N -0.444 5.444 13 C 0.269 3.731 14 C -0.225 4.225 15 C 0.106 3.894 16 C -0.477 4.477 17 H 0.087 0.913 18 C 0.037 3.963 19 N -0.807 5.807 20 Si 0.988 3.012 21 H -0.255 1.255 22 H -0.262 1.262 23 H -0.266 1.266 24 C -0.290 4.290 25 C 0.115 3.885 26 N -0.612 5.612 27 C 0.144 3.856 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.285 0.715 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.293 0.707 38 H 0.117 0.883 39 H 0.155 0.845 40 H 0.077 0.923 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.632 -1.214 -2.021 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 O -0.264 6.264 4 C 0.389 3.611 5 O -0.431 6.431 6 C -0.236 4.236 7 C 0.036 3.964 8 O -0.035 6.035 9 C -0.095 4.095 10 C -0.170 4.170 11 C -0.016 4.016 12 N -0.164 5.164 13 C 0.044 3.956 14 C -0.250 4.250 15 C 0.097 3.903 16 C -0.507 4.507 17 H 0.105 0.895 18 C -0.181 4.181 19 N -0.431 5.431 20 Si 0.808 3.192 21 H -0.178 1.178 22 H -0.186 1.186 23 H -0.191 1.191 24 C -0.313 4.313 25 C -0.038 4.038 26 N -0.332 5.332 27 C 0.018 3.982 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.300 0.700 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.104 0.896 38 H 0.136 0.864 39 H 0.172 0.828 40 H 0.095 0.905 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.106 -1.823 -1.333 20.232 hybrid contribution 1.419 0.346 -0.280 1.487 sum -18.687 -1.477 -1.613 18.814 Atomic orbital electron populations 1.21825 0.89520 1.04551 1.04094 1.23373 0.97440 0.78642 1.02570 1.86503 1.21672 1.34173 1.84092 1.20031 0.81033 0.88138 0.71907 1.90863 1.61438 1.43199 1.47619 1.19773 0.90903 0.92307 1.20644 1.25802 0.96454 0.81373 0.92724 1.83571 1.13044 1.36410 1.70446 1.22564 0.86501 0.92671 1.07735 1.22094 0.93962 0.95387 1.05605 1.20750 0.85340 0.93507 1.01966 1.63277 1.00583 1.03191 1.49359 1.19545 0.91245 0.92955 0.91868 1.21598 0.93678 1.01904 1.07776 1.18148 0.91930 0.90907 0.89265 1.19942 1.10775 1.16740 1.03283 0.89458 1.26904 0.95827 1.01450 0.93891 1.69849 1.33408 1.36991 1.02879 0.85071 0.78276 0.76292 0.79607 1.17802 1.18614 1.19119 1.21818 1.01423 0.99009 1.09074 1.21885 0.88363 0.97388 0.96125 1.67174 1.24312 1.27784 1.13899 1.21201 0.80937 0.94028 1.02005 0.90823 0.90803 0.88207 0.91489 0.91525 0.69995 0.90927 0.89924 0.86145 0.89562 0.86446 0.82777 0.90491 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 10.29 71.98 0.74 -0.55 16 2 C 0.05 0.90 6.20 71.98 0.45 1.34 16 3 O -0.35 -7.38 10.07 -56.84 -0.57 -7.96 16 4 C 0.54 15.82 7.95 70.18 0.56 16.38 16 5 O -0.54 -19.99 16.77 19.71 0.33 -19.66 16 6 C -0.23 -6.63 6.31 -19.09 -0.12 -6.75 16 7 C 0.11 2.03 11.95 67.42 0.81 2.84 16 8 O -0.14 -3.51 10.52 2.20 0.02 -3.48 16 9 C -0.05 -1.46 8.32 24.98 0.21 -1.25 16 10 C -0.17 -5.98 7.16 -18.51 -0.13 -6.11 16 11 C 0.11 4.66 6.27 85.36 0.54 5.20 16 12 N -0.44 -19.45 5.58 -701.87 -3.91 -23.36 16 13 C 0.27 13.23 6.03 132.91 0.80 14.03 16 14 C -0.22 -11.75 8.24 23.01 0.19 -11.56 16 15 C 0.11 5.60 5.61 -21.11 -0.12 5.48 16 16 C -0.48 -24.42 9.12 23.52 0.21 -24.20 16 17 H 0.09 4.24 7.90 -2.92 -0.02 4.22 16 18 C 0.04 1.79 5.20 85.29 0.44 2.23 16 19 N -0.81 -40.54 10.91 21.84 0.24 -40.30 16 20 Si 0.99 35.77 29.59 68.60 2.03 37.80 16 21 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 22 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 23 H -0.27 -9.33 7.11 99.48 0.71 -8.63 16 24 C -0.29 -13.96 9.85 22.60 0.22 -13.73 16 25 C 0.12 5.28 11.10 84.26 0.94 6.21 16 26 N -0.61 -29.84 8.13 -194.49 -1.58 -31.42 16 27 C 0.14 5.24 6.19 85.48 0.53 5.77 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.28 1.81 8.06 -2.91 -0.02 1.78 16 34 H 0.07 3.20 8.14 -2.39 -0.02 3.19 16 35 H 0.08 3.71 6.54 -2.39 -0.02 3.70 16 36 H 0.12 6.47 6.19 -2.91 -0.02 6.45 16 37 H 0.29 13.22 8.29 -92.71 -0.77 12.45 16 38 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 39 H 0.16 5.86 8.06 -2.91 -0.02 5.84 16 40 H 0.08 2.82 7.80 -2.39 -0.02 2.80 16 41 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 Total: -1.00 -68.86 356.57 3.88 -64.97 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 1.07 Total: 28.09 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 6.26 Total: -4.67 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -5.26 Total: -95.09 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.22 Total: -31.11 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Total: -68.86 3.88 -64.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167175564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.962 kcal (2) G-P(sol) polarization free energy of solvation -68.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds