Wall clock time and date at job start Tue Mar 31 2020 16:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36445 * 124.85095 * 2 1 4 4 C 1.34480 * 108.86088 * 179.88379 * 3 2 1 5 5 C 1.46693 * 106.33642 * 0.36537 * 4 3 2 6 6 C 1.47232 * 126.94615 * 179.78963 * 5 4 3 7 7 O 1.21631 * 120.00024 * 179.97438 * 6 5 4 8 8 N 1.34774 * 120.00015 * 359.97438 * 6 5 4 9 9 C 1.39879 * 120.00034 * 174.89115 * 8 6 5 10 10 C 1.39305 * 119.94988 * 325.54691 * 9 8 6 11 11 C 1.38480 * 120.42854 * 179.72158 * 10 9 8 12 12 C 1.37691 * 120.32090 * 0.54922 * 11 10 9 13 13 C 1.40746 * 119.88740 * 359.72828 * 12 11 10 14 14 C 1.41403 * 120.20650 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00536 * 25.13975 * 14 13 12 16 16 C 1.39932 * 119.99985 * 205.13402 * 14 13 12 17 17 N 1.30828 * 119.99996 * 16.78902 * 16 14 13 18 18 Si 1.86802 * 120.00149 * 196.78985 * 16 14 13 19 19 H 1.48501 * 109.47240 * 60.00078 * 18 16 14 20 20 H 1.48495 * 109.47054 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46992 * 300.00001 * 18 16 14 22 22 C 1.38257 * 119.94962 * 145.81685 * 9 8 6 23 23 C 1.34667 * 124.84745 * 180.30804 * 2 1 3 24 24 C 1.50696 * 125.80998 * 359.94004 * 23 2 1 25 25 C 1.50700 * 109.47279 * 90.02079 * 24 23 2 26 26 O 1.20820 * 119.99682 * 0.02562 * 25 24 23 27 27 O 1.34229 * 119.99947 * 180.02562 * 25 24 23 28 28 H 1.09001 * 109.46675 * 269.69128 * 1 2 3 29 29 H 1.09004 * 109.46911 * 149.69939 * 1 2 3 30 30 H 1.08994 * 109.46932 * 29.69138 * 1 2 3 31 31 H 1.07998 * 125.56779 * 0.02562 * 3 2 1 32 32 H 1.08003 * 126.83111 * 180.11626 * 4 3 2 33 33 H 0.96998 * 120.00386 * 354.89088 * 8 6 5 34 34 H 1.08006 * 119.78415 * 359.97438 * 10 9 8 35 35 H 1.07994 * 119.84178 * 180.25313 * 11 10 9 36 36 H 1.08000 * 120.05691 * 179.74339 * 12 11 10 37 37 H 0.96997 * 120.00241 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.16073 * 359.97438 * 22 9 8 39 39 H 1.08996 * 109.47207 * 210.03194 * 24 23 2 40 40 H 1.09008 * 109.46854 * 330.02335 * 24 23 2 41 41 H 0.96703 * 116.99925 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7493 0.0026 5 6 3.5464 -0.7176 -0.0047 6 6 4.7284 -1.5954 -0.0093 7 8 4.5887 -2.8037 -0.0148 8 7 5.9653 -1.0601 -0.0075 9 6 7.0865 -1.8902 0.0960 10 6 7.0259 -3.0476 0.8688 11 6 8.1281 -3.8795 0.9735 12 6 9.3004 -3.5652 0.3233 13 6 9.3783 -2.3961 -0.4565 14 6 10.5787 -2.0672 -1.1275 15 1 11.2794 -2.8449 -1.3933 16 6 10.8587 -0.7340 -1.4475 17 7 10.2024 0.2319 -0.8577 18 14 12.1696 -0.3335 -2.7166 19 1 11.8012 -0.9451 -4.0187 20 1 12.2736 1.1395 -2.8728 21 1 13.4764 -0.8766 -2.2667 22 6 8.2547 -1.5577 -0.5644 23 6 2.2345 -1.1052 -0.0059 24 6 1.7354 -2.5270 -0.0123 25 6 1.5683 -2.9944 -1.4352 26 8 1.8283 -2.2495 -2.3502 27 8 1.1306 -4.2383 -1.6860 28 1 -0.3633 -0.0055 1.0277 29 1 -0.3633 -0.8873 -0.5185 30 1 -0.3633 0.8927 -0.5090 31 1 1.8828 2.1372 0.0004 32 1 4.3980 1.4019 0.0050 33 1 6.0782 -0.0993 -0.0780 34 1 6.1121 -3.3000 1.3864 35 1 8.0694 -4.7765 1.5719 36 1 10.1587 -4.2149 0.4113 37 1 10.3967 1.1561 -1.0792 38 1 8.3040 -0.6585 -1.1606 39 1 2.4550 -3.1670 0.4983 40 1 0.7755 -2.5774 0.5018 41 1 1.0396 -4.4929 -2.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177367633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:19 Heat of formation + Delta-G solvation = -55.020915 kcal Electronic energy + Delta-G solvation = -27157.522229 eV Core-core repulsion = 23196.042956 eV Total energy + Delta-G solvation = -3961.479273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59928 -39.99633 -39.14189 -36.99057 -36.16656 -34.16412 -33.31268 -32.79607 -32.20871 -29.47987 -28.65998 -27.29926 -26.57012 -25.15395 -22.94922 -21.91635 -21.12844 -20.80166 -19.45635 -18.87541 -18.18914 -17.48548 -17.25293 -16.63728 -16.14741 -15.72567 -15.38795 -15.26641 -14.85984 -14.64004 -14.26147 -14.10384 -13.48681 -13.28131 -13.11797 -12.96142 -12.83577 -12.71030 -12.59723 -12.33447 -12.23331 -11.77168 -11.55664 -11.51463 -11.15518 -11.05816 -10.66760 -10.63926 -10.58155 -9.96510 -9.63791 -9.32326 -9.11463 -8.82914 -8.63826 -8.29148 -7.29384 -6.90051 -6.60002 -4.29451 1.63844 2.17940 2.39741 2.63503 2.86159 2.99811 3.10660 3.14366 3.15088 3.32098 3.95557 3.99384 4.04396 4.31583 4.44837 4.73187 4.73984 4.80055 4.88889 5.04465 5.24688 5.35933 5.42634 5.53439 5.76917 5.85331 6.08302 6.36823 6.41845 6.69919 6.73845 6.81073 6.91991 7.03764 7.10713 7.14018 7.19301 7.35070 7.72484 7.82209 7.82661 8.02230 8.11662 8.28852 8.45223 8.66895 8.92066 8.96992 9.06647 10.26562 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.003128 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.670183 B = 8950.009224 C = 9634.439216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.440 5.440 3 C -0.008 4.008 4 C -0.166 4.166 5 C -0.201 4.201 6 C 0.583 3.417 7 O -0.541 6.541 8 N -0.657 5.657 9 C 0.149 3.851 10 C -0.225 4.225 11 C -0.087 4.087 12 C -0.230 4.230 13 C 0.121 3.879 14 C -0.465 4.465 15 H 0.077 0.923 16 C 0.077 3.923 17 N -0.799 5.799 18 Si 0.907 3.093 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.182 4.182 23 C 0.098 3.902 24 C -0.051 4.051 25 C 0.486 3.514 26 O -0.505 6.505 27 O -0.516 6.516 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.169 0.831 32 H 0.149 0.851 33 H 0.402 0.598 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.279 0.721 38 H 0.122 0.878 39 H 0.148 0.852 40 H 0.108 0.892 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.318 2.824 1.760 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.116 5.116 3 C -0.135 4.135 4 C -0.190 4.190 5 C -0.211 4.211 6 C 0.372 3.628 7 O -0.420 6.420 8 N -0.299 5.299 9 C 0.057 3.943 10 C -0.246 4.246 11 C -0.106 4.106 12 C -0.250 4.250 13 C 0.118 3.882 14 C -0.495 4.495 15 H 0.095 0.905 16 C -0.140 4.140 17 N -0.425 5.425 18 Si 0.732 3.268 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.203 4.203 23 C -0.017 4.017 24 C -0.088 4.088 25 C 0.327 3.673 26 O -0.392 6.392 27 O -0.328 6.328 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.186 0.814 32 H 0.167 0.833 33 H 0.237 0.763 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.166 0.834 40 H 0.126 0.874 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -20.702 2.615 1.948 20.958 hybrid contribution 0.594 0.795 -1.257 1.602 sum -20.108 3.411 0.691 20.407 Atomic orbital electron populations 1.22077 0.77351 1.04583 1.03348 1.43380 1.06364 1.05382 1.56439 1.21662 0.90431 0.90860 1.10551 1.22074 0.96367 0.93072 1.07445 1.20246 0.91778 0.93598 1.15523 1.17323 0.82294 0.87097 0.76041 1.90706 1.86215 1.14485 1.50588 1.43240 1.04630 1.10234 1.71802 1.17604 0.85895 0.92555 0.98224 1.20299 0.98864 0.98159 1.07270 1.20405 0.93387 0.97569 0.99217 1.21026 0.97124 1.01766 1.05077 1.17343 0.91991 0.90072 0.88822 1.19491 1.03893 0.92799 1.33303 0.90482 1.25858 0.96826 0.96184 0.95096 1.69807 1.37387 1.00783 1.34567 0.86395 0.81147 0.77641 0.81657 1.18929 1.20442 1.19098 1.21079 0.91369 1.03881 1.03985 1.19197 0.89706 0.87167 1.05668 1.19851 1.05104 0.92002 0.91893 1.23119 0.72650 0.79135 0.92374 1.90754 1.45813 1.55550 1.47065 1.84498 1.79199 1.32907 1.36242 0.90452 0.90281 0.89356 0.81373 0.83287 0.76309 0.88049 0.89123 0.88963 0.91047 0.86018 0.83395 0.87403 0.73095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 10.61 59.85 0.64 1.05 16 2 N -0.44 -4.74 3.09 -119.87 -0.37 -5.11 16 3 C -0.01 -0.09 11.34 -16.83 -0.19 -0.28 16 4 C -0.17 -2.21 10.56 -37.50 -0.40 -2.60 16 5 C -0.20 -3.30 6.29 -103.35 -0.65 -3.95 16 6 C 0.58 11.76 7.54 -12.61 -0.09 11.67 16 7 O -0.54 -12.10 12.55 5.25 0.07 -12.03 16 8 N -0.66 -13.72 5.32 -10.93 -0.06 -13.78 16 9 C 0.15 3.68 6.25 -83.78 -0.52 3.16 16 10 C -0.22 -5.54 8.66 -39.10 -0.34 -5.88 16 11 C -0.09 -2.10 10.02 -39.69 -0.40 -2.50 16 12 C -0.23 -5.90 9.79 -38.83 -0.38 -6.28 16 13 C 0.12 3.31 5.57 -106.85 -0.59 2.72 16 14 C -0.46 -12.59 9.05 -37.74 -0.34 -12.93 16 15 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16 16 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 17 N -0.80 -20.60 10.94 55.55 0.61 -20.00 16 18 Si 0.91 19.00 29.59 -169.99 -5.03 13.97 16 19 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 C -0.18 -4.82 8.60 -38.68 -0.33 -5.16 16 23 C 0.10 1.36 5.38 -81.87 -0.44 0.92 16 24 C -0.05 -0.61 5.19 -29.04 -0.15 -0.76 16 25 C 0.49 6.52 8.32 36.01 0.30 6.82 16 26 O -0.50 -8.54 16.79 -18.74 -0.31 -8.86 16 27 O -0.52 -5.42 13.42 -39.26 -0.53 -5.95 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.46 7.49 -51.93 -0.39 0.07 16 30 H 0.09 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.15 1.74 7.71 -52.48 -0.40 1.33 16 33 H 0.40 7.36 7.96 -40.82 -0.32 7.04 16 34 H 0.10 2.44 6.47 -52.48 -0.34 2.10 16 35 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 36 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 37 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 38 H 0.12 3.28 6.17 -52.49 -0.32 2.96 16 39 H 0.15 2.02 6.47 -51.93 -0.34 1.68 16 40 H 0.11 0.84 7.58 -51.92 -0.39 0.44 16 41 H 0.41 2.65 9.10 45.56 0.41 3.07 16 LS Contribution 356.93 15.07 5.38 5.38 Total: -1.00 -35.62 356.93 -7.99 -43.62 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -3.76 Total: 14.88 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -3.99 Total: -12.13 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.18 Total: -38.88 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.78 Total: -26.84 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.62 -7.99 -43.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177367633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.404 kcal (2) G-P(sol) polarization free energy of solvation -35.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds