Wall clock time and date at job start Tue Mar 31 2020 16:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36445 * 124.85095 * 2 1 4 4 C 1.34480 * 108.86088 * 179.88379 * 3 2 1 5 5 C 1.46693 * 106.33642 * 0.36537 * 4 3 2 6 6 C 1.47232 * 126.94615 * 179.78963 * 5 4 3 7 7 O 1.21631 * 120.00024 * 179.97438 * 6 5 4 8 8 N 1.34774 * 120.00015 * 359.97438 * 6 5 4 9 9 C 1.39879 * 120.00034 * 174.89115 * 8 6 5 10 10 C 1.39305 * 119.94988 * 325.54691 * 9 8 6 11 11 C 1.38480 * 120.42854 * 179.72158 * 10 9 8 12 12 C 1.37691 * 120.32090 * 0.54922 * 11 10 9 13 13 C 1.40746 * 119.88740 * 359.72828 * 12 11 10 14 14 C 1.41403 * 120.20650 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00536 * 25.13975 * 14 13 12 16 16 C 1.39932 * 119.99985 * 205.13402 * 14 13 12 17 17 N 1.30828 * 119.99996 * 16.78902 * 16 14 13 18 18 Si 1.86802 * 120.00149 * 196.78985 * 16 14 13 19 19 H 1.48501 * 109.47240 * 60.00078 * 18 16 14 20 20 H 1.48495 * 109.47054 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46992 * 300.00001 * 18 16 14 22 22 C 1.38257 * 119.94962 * 145.81685 * 9 8 6 23 23 C 1.34667 * 124.84745 * 180.30804 * 2 1 3 24 24 C 1.50696 * 125.80998 * 359.94004 * 23 2 1 25 25 C 1.50700 * 109.47279 * 90.02079 * 24 23 2 26 26 O 1.20820 * 119.99682 * 0.02562 * 25 24 23 27 27 O 1.34229 * 119.99947 * 180.02562 * 25 24 23 28 28 H 1.09001 * 109.46675 * 269.69128 * 1 2 3 29 29 H 1.09004 * 109.46911 * 149.69939 * 1 2 3 30 30 H 1.08994 * 109.46932 * 29.69138 * 1 2 3 31 31 H 1.07998 * 125.56779 * 0.02562 * 3 2 1 32 32 H 1.08003 * 126.83111 * 180.11626 * 4 3 2 33 33 H 0.96998 * 120.00386 * 354.89088 * 8 6 5 34 34 H 1.08006 * 119.78415 * 359.97438 * 10 9 8 35 35 H 1.07994 * 119.84178 * 180.25313 * 11 10 9 36 36 H 1.08000 * 120.05691 * 179.74339 * 12 11 10 37 37 H 0.96997 * 120.00241 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.16073 * 359.97438 * 22 9 8 39 39 H 1.08996 * 109.47207 * 210.03194 * 24 23 2 40 40 H 1.09008 * 109.46854 * 330.02335 * 24 23 2 41 41 H 0.96703 * 116.99925 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7493 0.0026 5 6 3.5464 -0.7176 -0.0047 6 6 4.7284 -1.5954 -0.0093 7 8 4.5887 -2.8037 -0.0148 8 7 5.9653 -1.0601 -0.0075 9 6 7.0865 -1.8902 0.0960 10 6 7.0259 -3.0476 0.8688 11 6 8.1281 -3.8795 0.9735 12 6 9.3004 -3.5652 0.3233 13 6 9.3783 -2.3961 -0.4565 14 6 10.5787 -2.0672 -1.1275 15 1 11.2794 -2.8449 -1.3933 16 6 10.8587 -0.7340 -1.4475 17 7 10.2024 0.2319 -0.8577 18 14 12.1696 -0.3335 -2.7166 19 1 11.8012 -0.9451 -4.0187 20 1 12.2736 1.1395 -2.8728 21 1 13.4764 -0.8766 -2.2667 22 6 8.2547 -1.5577 -0.5644 23 6 2.2345 -1.1052 -0.0059 24 6 1.7354 -2.5270 -0.0123 25 6 1.5683 -2.9944 -1.4352 26 8 1.8283 -2.2495 -2.3502 27 8 1.1306 -4.2383 -1.6860 28 1 -0.3633 -0.0055 1.0277 29 1 -0.3633 -0.8873 -0.5185 30 1 -0.3633 0.8927 -0.5090 31 1 1.8828 2.1372 0.0004 32 1 4.3980 1.4019 0.0050 33 1 6.0782 -0.0993 -0.0780 34 1 6.1121 -3.3000 1.3864 35 1 8.0694 -4.7765 1.5719 36 1 10.1587 -4.2149 0.4113 37 1 10.3967 1.1561 -1.0792 38 1 8.3040 -0.6585 -1.1606 39 1 2.4550 -3.1670 0.4983 40 1 0.7755 -2.5774 0.5018 41 1 1.0396 -4.4929 -2.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177367633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:15 Heat of formation + Delta-G solvation = -78.500683 kcal Electronic energy + Delta-G solvation = -27158.540388 eV Core-core repulsion = 23196.042956 eV Total energy + Delta-G solvation = -3962.497433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.57592 -41.04313 -40.75010 -38.82940 -37.15966 -35.95647 -35.08891 -33.75077 -33.19960 -31.45657 -30.37501 -28.33257 -27.48781 -27.11173 -24.22455 -23.09194 -22.93173 -22.24263 -20.94392 -20.06267 -19.20030 -19.14862 -18.56099 -17.69780 -17.50900 -17.05080 -16.72073 -16.53439 -16.49506 -16.14794 -15.69344 -15.38373 -14.83166 -14.71576 -14.35571 -14.19796 -14.11127 -14.05761 -13.75396 -13.47773 -13.23704 -13.06950 -13.00751 -12.81976 -12.72734 -12.56274 -12.53577 -12.30404 -11.83693 -11.75479 -11.55695 -11.13144 -10.93082 -10.61382 -9.59846 -9.31346 -9.28960 -8.80337 -8.50891 -6.33971 0.43762 0.99549 1.09049 1.15495 1.39835 1.47799 1.51105 1.57897 1.80650 2.17295 2.23038 2.47980 2.59405 2.81908 3.39121 3.73529 3.87907 3.91423 4.02556 4.26607 4.36371 4.43763 4.46832 4.50428 4.60607 4.69736 4.75626 4.87267 4.95296 5.08242 5.13661 5.18738 5.27201 5.38681 5.54564 5.68728 5.82671 5.88639 5.99906 6.06090 6.10761 6.29606 6.37612 6.62485 6.79775 6.92248 6.95428 7.00655 7.35875 8.36351 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.003128 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.670183 B = 8950.009224 C = 9634.439216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.431 5.431 3 C 0.010 3.990 4 C -0.191 4.191 5 C -0.248 4.248 6 C 0.579 3.421 7 O -0.572 6.572 8 N -0.658 5.658 9 C 0.153 3.847 10 C -0.238 4.238 11 C -0.083 4.083 12 C -0.250 4.250 13 C 0.093 3.907 14 C -0.500 4.500 15 H 0.077 0.923 16 C 0.037 3.963 17 N -0.822 5.822 18 Si 0.982 3.018 19 H -0.265 1.265 20 H -0.265 1.265 21 H -0.259 1.259 22 C -0.206 4.206 23 C 0.100 3.900 24 C -0.052 4.052 25 C 0.490 3.510 26 O -0.547 6.547 27 O -0.508 6.508 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.213 0.787 32 H 0.155 0.845 33 H 0.411 0.589 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.288 0.712 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.155 0.845 41 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.415 4.004 1.732 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.106 5.106 3 C -0.117 4.117 4 C -0.214 4.214 5 C -0.259 4.259 6 C 0.371 3.629 7 O -0.453 6.453 8 N -0.301 5.301 9 C 0.059 3.941 10 C -0.259 4.259 11 C -0.101 4.101 12 C -0.270 4.270 13 C 0.090 3.910 14 C -0.530 4.530 15 H 0.095 0.905 16 C -0.178 4.178 17 N -0.448 5.448 18 Si 0.803 3.197 19 H -0.189 1.189 20 H -0.190 1.190 21 H -0.183 1.183 22 C -0.228 4.228 23 C -0.018 4.018 24 C -0.089 4.089 25 C 0.333 3.667 26 O -0.437 6.437 27 O -0.322 6.322 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.229 0.771 32 H 0.172 0.828 33 H 0.247 0.753 34 H 0.123 0.877 35 H 0.140 0.860 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.148 0.852 40 H 0.172 0.828 41 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -22.856 3.800 1.936 23.250 hybrid contribution 1.062 0.413 -1.209 1.661 sum -21.793 4.212 0.727 22.209 Atomic orbital electron populations 1.22507 0.74136 1.06087 1.05564 1.43735 1.08247 1.04384 1.54188 1.22290 0.89425 0.92464 1.07511 1.22274 0.98246 0.91767 1.09094 1.20116 0.91337 0.94757 1.19650 1.17959 0.82813 0.87376 0.74748 1.90661 1.86659 1.15949 1.52029 1.43246 1.04262 1.10392 1.72224 1.17726 0.86511 0.92827 0.96991 1.20483 0.99241 0.98516 1.07632 1.20735 0.92535 0.98292 0.98581 1.21219 0.98214 1.01855 1.05702 1.17750 0.92650 0.91066 0.89501 1.19770 1.04285 0.93984 1.34947 0.90503 1.26723 0.99135 0.95411 0.96540 1.69854 1.38351 1.01450 1.35126 0.85259 0.78133 0.78002 0.78328 1.18939 1.18951 1.18305 1.21011 0.92262 1.04046 1.05436 1.19365 0.89392 0.88704 1.04359 1.19927 1.06865 0.90763 0.91376 1.23354 0.71582 0.79316 0.92446 1.90738 1.47857 1.56803 1.48316 1.84463 1.78340 1.31449 1.37958 0.87787 0.89838 0.86993 0.77078 0.82767 0.75251 0.87690 0.86006 0.87926 0.90102 0.87227 0.85237 0.82779 0.71069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.61 127.77 1.36 1.81 16 2 N -0.43 -8.02 3.09 -533.17 -1.65 -9.67 16 3 C 0.01 0.19 11.34 83.12 0.94 1.13 16 4 C -0.19 -4.95 10.56 23.62 0.25 -4.70 16 5 C -0.25 -8.20 6.29 -19.04 -0.12 -8.32 16 6 C 0.58 24.26 7.54 86.61 0.65 24.91 16 7 O -0.57 -26.56 12.55 -4.13 -0.05 -26.61 16 8 N -0.66 -28.78 5.32 -306.75 -1.63 -30.41 16 9 C 0.15 7.86 6.25 38.12 0.24 8.09 16 10 C -0.24 -12.04 8.66 22.58 0.20 -11.85 16 11 C -0.08 -4.05 10.02 22.20 0.22 -3.83 16 12 C -0.25 -13.18 9.79 22.75 0.22 -12.95 16 13 C 0.09 5.32 5.57 -21.31 -0.12 5.20 16 14 C -0.50 -27.95 9.05 23.46 0.21 -27.74 16 15 H 0.08 4.13 7.90 -2.91 -0.02 4.11 16 16 C 0.04 1.90 5.16 85.25 0.44 2.34 16 17 N -0.82 -43.22 10.94 21.82 0.24 -42.98 16 18 Si 0.98 39.07 29.59 68.60 2.03 41.10 16 19 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 20 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 22 C -0.21 -11.45 8.60 22.85 0.20 -11.26 16 23 C 0.10 2.65 5.38 41.78 0.22 2.88 16 24 C -0.05 -1.18 5.19 29.10 0.15 -1.03 16 25 C 0.49 12.72 8.32 71.24 0.59 13.32 16 26 O -0.55 -18.39 16.79 21.98 0.37 -18.02 16 27 O -0.51 -10.01 13.42 -51.41 -0.69 -10.70 16 28 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.08 0.64 7.49 -2.38 -0.02 0.63 16 30 H 0.11 0.43 8.13 -2.39 -0.02 0.41 16 31 H 0.21 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.15 3.61 7.71 -2.91 -0.02 3.59 16 33 H 0.41 15.92 7.96 -92.71 -0.74 15.18 16 34 H 0.11 5.19 6.47 -2.91 -0.02 5.17 16 35 H 0.12 5.07 8.06 -2.91 -0.02 5.04 16 36 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 37 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 38 H 0.11 6.24 6.17 -2.91 -0.02 6.22 16 39 H 0.13 3.55 6.47 -2.39 -0.02 3.53 16 40 H 0.15 1.92 7.58 -2.38 -0.02 1.90 16 41 H 0.43 4.98 9.10 -74.06 -0.67 4.31 16 Total: -1.00 -81.19 356.93 3.97 -77.22 By element: Atomic # 1 Polarization: 42.37 SS G_CDS: -0.30 Total: 42.06 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 5.66 Total: -22.00 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -3.04 Total: -83.06 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -0.37 Total: -55.33 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -81.19 3.97 -77.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177367633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.281 kcal (2) G-P(sol) polarization free energy of solvation -81.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds