Wall clock time and date at job start Tue Mar 31 2020 15:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46923 * 2 1 4 4 C 1.53000 * 109.46569 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46746 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00303 * 269.99993 * 5 4 3 7 7 C 1.50701 * 109.47423 * 270.00419 * 6 5 4 8 8 H 1.08006 * 120.00025 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00261 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00089 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99819 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47077 * 60.00199 * 11 9 7 13 13 H 1.48504 * 109.47080 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47430 * 300.00010 * 11 9 7 15 15 C 1.34778 * 120.00032 * 90.00492 * 5 4 3 16 16 S 1.71195 * 120.00083 * 180.02562 * 15 5 4 17 17 N 1.34777 * 119.99772 * 359.97438 * 15 5 4 18 18 C 1.40006 * 119.99825 * 185.53070 * 17 15 5 19 19 C 1.38882 * 120.03098 * 221.84327 * 18 17 15 20 20 C 1.38128 * 119.99449 * 179.97438 * 19 18 17 21 21 C 1.38429 * 120.06951 * 0.02562 * 20 19 18 22 22 F 1.35106 * 119.95937 * 180.27900 * 21 20 19 23 23 C 1.38662 * 120.07258 * 0.02562 * 21 20 19 24 24 F 1.35105 * 119.99934 * 180.02562 * 23 21 20 25 25 C 1.38318 * 120.00564 * 359.97438 * 23 21 20 26 26 H 1.09000 * 109.47067 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46883 * 300.00024 * 1 2 3 28 28 H 1.09009 * 109.46956 * 59.99579 * 1 2 3 29 29 H 1.09001 * 109.47127 * 240.00435 * 2 1 3 30 30 H 1.08992 * 109.46971 * 120.00136 * 2 1 3 31 31 H 1.09001 * 109.46864 * 60.00274 * 3 2 1 32 32 H 1.09000 * 109.47260 * 299.99544 * 3 2 1 33 33 H 1.09001 * 109.47299 * 60.00546 * 4 3 2 34 34 H 1.08998 * 109.47575 * 300.00161 * 4 3 2 35 35 H 1.09007 * 109.46911 * 30.00032 * 6 5 4 36 36 H 1.08994 * 109.47531 * 150.00276 * 6 5 4 37 37 H 0.97001 * 120.00522 * 179.97438 * 10 9 7 38 38 H 0.97000 * 120.00436 * 5.52800 * 17 15 5 39 39 H 1.07996 * 120.00312 * 359.97438 * 19 18 17 40 40 H 1.07994 * 119.96583 * 180.02562 * 20 19 18 41 41 H 1.07996 * 120.04064 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3031 3.5136 -1.2690 7 6 5.7265 3.2765 -1.7033 8 1 6.3834 2.6727 -1.0948 9 6 6.1903 3.8305 -2.8777 10 7 5.3904 4.5653 -3.6190 11 14 7.9550 3.5371 -3.4156 12 1 8.1831 2.0803 -3.5915 13 1 8.2030 4.2364 -4.7021 14 1 8.8817 4.0619 -2.3809 15 6 4.2826 3.4597 1.1669 16 16 4.8526 5.0740 1.1662 17 7 4.0570 2.8252 2.3344 18 6 4.1782 3.5202 3.5437 19 6 4.7954 2.9183 4.6325 20 6 4.9150 3.6050 5.8251 21 6 4.4197 4.8928 5.9366 22 9 4.5428 5.5644 7.1024 23 6 3.8019 5.4961 4.8516 24 9 3.3195 6.7532 4.9620 25 6 3.6805 4.8113 3.6560 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 3.6225 3.1290 -2.0287 36 1 4.1361 4.5829 -1.1393 37 1 5.7167 4.9554 -4.4450 38 1 3.8108 1.8870 2.3369 39 1 5.1819 1.9135 4.5468 40 1 5.3954 3.1366 6.6713 41 1 3.1992 5.2804 2.8107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200690047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:43 Heat of formation + Delta-G solvation = -47.255772 kcal Electronic energy + Delta-G solvation = -25414.244289 eV Core-core repulsion = 21477.458173 eV Total energy + Delta-G solvation = -3936.786116 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.34180 -48.40694 -40.16044 -38.45026 -35.66407 -34.64037 -32.65109 -30.88988 -29.73841 -29.40688 -27.13035 -24.93954 -23.74921 -23.23182 -22.24495 -21.50019 -20.69713 -18.66962 -17.98594 -17.55486 -16.83419 -16.64332 -16.27700 -16.16984 -15.50425 -15.06039 -14.83241 -14.75608 -14.61391 -14.41224 -14.04564 -13.92086 -13.61532 -13.20633 -13.00199 -12.78583 -12.52513 -12.38003 -11.93808 -11.62383 -11.42512 -11.40299 -11.33928 -11.25741 -11.02309 -10.75833 -10.73523 -10.42247 -10.23797 -9.96316 -9.24541 -8.92404 -8.52266 -8.07120 -7.12046 -6.40640 -6.13545 -4.18187 0.78219 1.05572 1.92530 2.41773 3.02315 3.27580 3.33678 3.37227 3.39457 3.52637 3.89166 4.38247 4.38578 4.56536 4.66941 4.72626 4.85219 4.90165 5.00138 5.08261 5.22913 5.32289 5.36346 5.44086 5.58969 5.61417 5.75962 5.78637 5.82921 5.84912 5.96413 6.04562 6.10033 6.17521 6.31738 6.45410 6.82062 6.97872 7.29311 7.36332 7.75613 7.79797 8.02948 8.79584 9.45412 10.94984 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.009718 B = 0.004145 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.427607 B = 6753.615358 C = 8644.605884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.138 4.138 4 C 0.089 3.911 5 N -0.525 5.525 6 C 0.236 3.764 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.070 3.930 10 N -0.889 5.889 11 Si 0.899 3.101 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.547 3.453 16 S -0.621 6.621 17 N -0.653 5.653 18 C 0.172 3.828 19 C -0.116 4.116 20 C -0.121 4.121 21 C 0.058 3.942 22 F -0.133 7.133 23 C 0.075 3.925 24 F -0.127 7.127 25 C -0.082 4.082 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.266 0.734 38 H 0.404 0.596 39 H 0.138 0.862 40 H 0.146 0.854 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.082 -10.624 14.359 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.177 4.177 4 C -0.037 4.037 5 N -0.227 5.227 6 C 0.118 3.882 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.133 4.133 10 N -0.527 5.527 11 Si 0.727 3.273 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.190 3.810 16 S -0.485 6.485 17 N -0.284 5.284 18 C 0.076 3.924 19 C -0.138 4.138 20 C -0.141 4.141 21 C 0.037 3.963 22 F -0.112 7.112 23 C 0.053 3.947 24 F -0.106 7.106 25 C -0.106 4.106 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.244 0.756 39 H 0.156 0.844 40 H 0.164 0.836 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.732 -9.417 13.924 18.502 hybrid contribution 0.723 -1.101 -0.255 1.342 sum -7.009 -10.518 13.670 18.617 Atomic orbital electron populations 1.21757 0.95600 1.01526 1.02032 1.21454 0.96149 0.96028 1.02247 1.22065 0.94630 0.97577 1.03424 1.21921 0.94402 0.83594 1.03809 1.47990 1.55637 1.12501 1.06563 1.20054 0.97533 0.95685 0.74916 1.21047 0.95912 1.32907 1.06411 0.92593 1.24809 0.97801 0.94543 0.96167 1.69894 1.35762 1.32771 1.14250 0.86535 0.84746 0.78066 0.77973 1.20415 1.21083 1.19953 1.22365 0.82872 0.94595 0.81179 1.93289 1.64111 0.98493 1.92562 1.42310 1.70175 1.13293 1.02662 1.17019 0.98086 0.92623 0.84647 1.20755 0.99478 1.01505 0.92025 1.20655 1.01951 0.92406 0.99136 1.17659 1.04469 0.92312 0.81857 1.91502 1.94301 1.80024 1.45379 1.17291 1.02002 0.81745 0.93685 1.91526 1.85882 1.36730 1.96430 1.21364 0.99178 0.94122 0.95969 0.92749 0.92827 0.92499 0.91422 0.92080 0.91948 0.90436 0.87980 0.91647 0.94144 0.90247 0.92460 0.75635 0.84375 0.83609 0.81593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.14 -1.50 5.54 -26.73 -0.15 -1.65 16 4 C 0.09 1.15 5.22 -4.04 -0.02 1.13 16 5 N -0.53 -9.54 2.46 -177.09 -0.43 -9.97 16 6 C 0.24 5.55 4.92 -5.19 -0.03 5.52 16 7 C -0.52 -13.78 9.39 -34.44 -0.32 -14.10 16 8 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 9 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 10 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 11 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 15 C 0.55 10.02 7.46 -86.92 -0.65 9.37 16 16 S -0.62 -14.43 24.46 -107.50 -2.63 -17.06 16 17 N -0.65 -8.79 5.20 -11.39 -0.06 -8.85 16 18 C 0.17 2.29 5.91 -83.67 -0.49 1.79 16 19 C -0.12 -1.21 9.97 -39.38 -0.39 -1.60 16 20 C -0.12 -1.25 10.02 -39.55 -0.40 -1.65 16 21 C 0.06 0.75 7.30 -39.35 -0.29 0.47 16 22 F -0.13 -1.79 17.18 2.25 0.04 -1.75 16 23 C 0.08 1.11 7.30 -39.40 -0.29 0.83 16 24 F -0.13 -2.02 17.18 2.25 0.04 -1.99 16 25 C -0.08 -1.24 7.83 -39.34 -0.31 -1.55 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.40 8.07 -51.93 -0.42 0.98 16 34 H 0.07 0.66 6.29 -51.93 -0.33 0.33 16 35 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 36 H 0.08 2.14 6.58 -51.93 -0.34 1.80 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.40 4.03 6.52 -40.82 -0.27 3.77 16 39 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.17 2.85 6.27 -49.89 -0.31 2.54 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -31.84 363.81 -10.50 -42.34 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.44 Total: 1.68 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -3.22 Total: -1.66 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.24 Total: -43.34 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.08 Total: -3.74 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -14.43 SS G_CDS: -2.63 Total: -17.06 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.84 -10.50 -42.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200690047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.916 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds