Wall clock time and date at job start Tue Mar 31 2020 15:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46923 * 2 1 4 4 C 1.53000 * 109.46569 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46746 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00303 * 269.99993 * 5 4 3 7 7 C 1.50701 * 109.47423 * 270.00419 * 6 5 4 8 8 H 1.08006 * 120.00025 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00261 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00089 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99819 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47077 * 60.00199 * 11 9 7 13 13 H 1.48504 * 109.47080 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47430 * 300.00010 * 11 9 7 15 15 C 1.34778 * 120.00032 * 90.00492 * 5 4 3 16 16 S 1.71195 * 120.00083 * 180.02562 * 15 5 4 17 17 N 1.34777 * 119.99772 * 359.97438 * 15 5 4 18 18 C 1.40006 * 119.99825 * 185.53070 * 17 15 5 19 19 C 1.38882 * 120.03098 * 221.84327 * 18 17 15 20 20 C 1.38128 * 119.99449 * 179.97438 * 19 18 17 21 21 C 1.38429 * 120.06951 * 0.02562 * 20 19 18 22 22 F 1.35106 * 119.95937 * 180.27900 * 21 20 19 23 23 C 1.38662 * 120.07258 * 0.02562 * 21 20 19 24 24 F 1.35105 * 119.99934 * 180.02562 * 23 21 20 25 25 C 1.38318 * 120.00564 * 359.97438 * 23 21 20 26 26 H 1.09000 * 109.47067 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46883 * 300.00024 * 1 2 3 28 28 H 1.09009 * 109.46956 * 59.99579 * 1 2 3 29 29 H 1.09001 * 109.47127 * 240.00435 * 2 1 3 30 30 H 1.08992 * 109.46971 * 120.00136 * 2 1 3 31 31 H 1.09001 * 109.46864 * 60.00274 * 3 2 1 32 32 H 1.09000 * 109.47260 * 299.99544 * 3 2 1 33 33 H 1.09001 * 109.47299 * 60.00546 * 4 3 2 34 34 H 1.08998 * 109.47575 * 300.00161 * 4 3 2 35 35 H 1.09007 * 109.46911 * 30.00032 * 6 5 4 36 36 H 1.08994 * 109.47531 * 150.00276 * 6 5 4 37 37 H 0.97001 * 120.00522 * 179.97438 * 10 9 7 38 38 H 0.97000 * 120.00436 * 5.52800 * 17 15 5 39 39 H 1.07996 * 120.00312 * 359.97438 * 19 18 17 40 40 H 1.07994 * 119.96583 * 180.02562 * 20 19 18 41 41 H 1.07996 * 120.04064 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3031 3.5136 -1.2690 7 6 5.7265 3.2765 -1.7033 8 1 6.3834 2.6727 -1.0948 9 6 6.1903 3.8305 -2.8777 10 7 5.3904 4.5653 -3.6190 11 14 7.9550 3.5371 -3.4156 12 1 8.1831 2.0803 -3.5915 13 1 8.2030 4.2364 -4.7021 14 1 8.8817 4.0619 -2.3809 15 6 4.2826 3.4597 1.1669 16 16 4.8526 5.0740 1.1662 17 7 4.0570 2.8252 2.3344 18 6 4.1782 3.5202 3.5437 19 6 4.7954 2.9183 4.6325 20 6 4.9150 3.6050 5.8251 21 6 4.4197 4.8928 5.9366 22 9 4.5428 5.5644 7.1024 23 6 3.8019 5.4961 4.8516 24 9 3.3195 6.7532 4.9620 25 6 3.6805 4.8113 3.6560 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 3.6225 3.1290 -2.0287 36 1 4.1361 4.5829 -1.1393 37 1 5.7167 4.9554 -4.4450 38 1 3.8108 1.8870 2.3369 39 1 5.1819 1.9135 4.5468 40 1 5.3954 3.1366 6.6713 41 1 3.1992 5.2804 2.8107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200690047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:42 Heat of formation + Delta-G solvation = -63.719082 kcal Electronic energy + Delta-G solvation = -25414.958192 eV Core-core repulsion = 21477.458173 eV Total energy + Delta-G solvation = -3937.500019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.45076 -49.53242 -41.39964 -39.67433 -36.74916 -35.84464 -34.51827 -31.91057 -30.77740 -30.73129 -28.77331 -26.10899 -25.31460 -24.34610 -23.48184 -22.42656 -21.88666 -19.91104 -19.23111 -18.67476 -18.61577 -17.93101 -17.65569 -17.27609 -16.65404 -16.33904 -16.21661 -16.01830 -15.96151 -15.51143 -15.36775 -15.00385 -14.61656 -14.40509 -14.12903 -13.88835 -13.72001 -13.52977 -13.41558 -13.12476 -12.86286 -12.63909 -12.42964 -12.41352 -12.33111 -12.14807 -12.13959 -11.83129 -11.73974 -11.49535 -10.62084 -10.57519 -10.05769 -9.28658 -8.87394 -8.20793 -8.15074 -6.31580 -0.33262 0.05201 0.51254 0.95369 1.37954 1.43910 1.48288 1.56692 2.21029 2.38316 2.42351 2.86307 3.13583 3.33851 3.60859 3.71315 3.82145 3.94703 3.99709 4.11219 4.23681 4.34482 4.44519 4.63635 4.66118 4.75909 4.83579 4.88810 4.95472 4.96092 5.02624 5.04106 5.16072 5.21423 5.26369 5.34216 5.45960 5.55906 5.67152 5.74689 5.91127 6.00206 6.34867 6.72666 7.35268 8.87209 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.009718 B = 0.004145 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.427607 B = 6753.615358 C = 8644.605884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.130 4.130 4 C 0.083 3.917 5 N -0.525 5.525 6 C 0.255 3.745 7 C -0.526 4.526 8 H 0.053 0.947 9 C 0.019 3.981 10 N -0.923 5.923 11 Si 0.959 3.041 12 H -0.259 1.259 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.575 3.425 16 S -0.732 6.732 17 N -0.621 5.621 18 C 0.151 3.849 19 C -0.089 4.089 20 C -0.102 4.102 21 C 0.056 3.944 22 F -0.137 7.137 23 C 0.050 3.950 24 F -0.144 7.144 25 C -0.096 4.096 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.035 0.965 36 H 0.039 0.961 37 H 0.266 0.734 38 H 0.427 0.573 39 H 0.184 0.816 40 H 0.189 0.811 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 -14.847 16.579 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.169 4.169 4 C -0.041 4.041 5 N -0.226 5.226 6 C 0.134 3.866 7 C -0.565 4.565 8 H 0.071 0.929 9 C -0.181 4.181 10 N -0.562 5.562 11 Si 0.784 3.216 12 H -0.183 1.183 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.213 3.787 16 S -0.599 6.599 17 N -0.253 5.253 18 C 0.057 3.943 19 C -0.109 4.109 20 C -0.121 4.121 21 C 0.035 3.965 22 F -0.115 7.115 23 C 0.027 3.973 24 F -0.123 7.123 25 C -0.120 4.120 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.272 0.728 39 H 0.201 0.799 40 H 0.206 0.794 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.973 -13.722 16.212 22.354 hybrid contribution 0.390 0.134 -0.815 0.913 sum -6.583 -13.588 15.397 21.565 Atomic orbital electron populations 1.21767 0.95349 1.02317 1.01609 1.21435 0.96291 0.93947 1.03537 1.21998 0.92994 0.99466 1.02433 1.22320 0.95681 0.80390 1.05691 1.47765 1.55502 1.14355 1.04959 1.19418 0.96286 0.93938 0.76936 1.21300 0.96929 1.32197 1.06105 0.92895 1.25611 1.01494 0.94475 0.96537 1.70011 1.37518 1.33991 1.14719 0.85598 0.79925 0.78918 0.77141 1.18320 1.20812 1.20943 1.21640 0.81912 0.92609 0.82543 1.93536 1.68660 1.03921 1.93763 1.42012 1.68140 1.13965 1.01147 1.17256 0.99569 0.92300 0.85214 1.21192 0.96694 1.02846 0.90208 1.21143 0.99990 0.90722 1.00271 1.17906 1.04264 0.93294 0.81071 1.91497 1.94279 1.80392 1.45358 1.17543 1.03565 0.81480 0.94672 1.91473 1.86352 1.37911 1.96556 1.21145 1.00185 0.95308 0.95347 0.91331 0.92573 0.93722 0.91392 0.89499 0.91566 0.92990 0.88383 0.87476 0.94725 0.94338 0.92545 0.72837 0.79873 0.79360 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.11 -1.56 5.93 30.60 0.18 -1.38 16 3 C -0.13 -2.59 5.54 30.60 0.17 -2.42 16 4 C 0.08 1.95 5.22 86.38 0.45 2.40 16 5 N -0.53 -18.93 2.46 -714.17 -1.75 -20.69 16 6 C 0.25 12.39 4.92 85.63 0.42 12.81 16 7 C -0.53 -28.10 9.39 25.60 0.24 -27.86 16 8 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 9 C 0.02 1.03 5.46 84.66 0.46 1.49 16 10 N -0.92 -54.01 13.29 21.45 0.28 -53.73 16 11 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 15 C 0.58 20.94 7.46 179.05 1.34 22.28 16 16 S -0.73 -35.93 24.46 -56.49 -1.38 -37.32 16 17 N -0.62 -15.15 5.20 -189.95 -0.99 -16.14 16 18 C 0.15 3.70 5.91 38.13 0.23 3.93 16 19 C -0.09 -1.41 9.97 22.40 0.22 -1.18 16 20 C -0.10 -1.63 10.02 22.29 0.22 -1.40 16 21 C 0.06 1.34 7.30 22.42 0.16 1.50 16 22 F -0.14 -3.45 17.18 44.97 0.77 -2.68 16 23 C 0.05 1.49 7.30 22.39 0.16 1.65 16 24 F -0.14 -4.89 17.18 44.97 0.77 -4.12 16 25 C -0.10 -2.98 7.83 22.43 0.18 -2.80 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 2.47 8.07 -2.39 -0.02 2.45 16 34 H 0.11 1.63 6.29 -2.39 -0.02 1.61 16 35 H 0.03 1.72 8.07 -2.38 -0.02 1.70 16 36 H 0.04 2.22 6.58 -2.39 -0.02 2.20 16 37 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 38 H 0.43 6.51 6.52 -92.71 -0.60 5.90 16 39 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.19 1.53 8.06 -2.91 -0.02 1.50 16 41 H 0.14 5.05 6.27 -4.57 -0.03 5.02 16 Total: -1.00 -76.29 363.81 5.32 -70.96 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.44 Total: 10.09 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 5.15 Total: 7.64 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -2.46 Total: -90.55 kcal Atomic # 9 Polarization: -8.34 SS G_CDS: 1.55 Total: -6.80 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -35.93 SS G_CDS: -1.38 Total: -37.32 kcal Total: -76.29 5.32 -70.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200690047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.244 kcal (2) G-P(sol) polarization free energy of solvation -76.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds