Wall clock time and date at job start Tue Mar 31 2020 16:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45201 * 109.47133 * 2 1 4 4 C 1.34734 * 116.99660 * 179.97438 * 3 2 1 5 5 O 1.21481 * 120.00734 * 0.02562 * 4 3 2 6 6 C 1.47602 * 119.99642 * 179.97438 * 4 3 2 7 7 C 1.40039 * 120.98428 * 3.70885 * 6 4 3 8 8 C 1.37916 * 119.08531 * 180.02562 * 7 6 4 9 9 N 1.31963 * 121.14819 * 0.02562 * 8 7 6 10 10 C 1.31543 * 122.20046 * 359.67748 * 9 8 7 11 11 C 1.39241 * 120.76209 * 0.58688 * 10 9 8 12 12 N 1.38851 * 120.61734 * 179.72572 * 11 10 9 13 13 C 1.39790 * 120.00523 * 258.64494 * 12 11 10 14 14 C 1.38781 * 120.10100 * 5.45266 * 13 12 11 15 15 C 1.38183 * 119.98854 * 180.25822 * 14 13 12 16 16 C 1.38356 * 120.20693 * 359.74248 * 15 14 13 17 17 C 1.38176 * 120.21245 * 359.97438 * 16 15 14 18 18 C 1.38722 * 120.00611 * 359.97438 * 17 16 15 19 19 O 1.35786 * 120.10021 * 180.02562 * 18 17 16 20 20 C 1.34801 * 117.00156 * 5.47720 * 19 18 17 21 21 H 1.07999 * 119.99698 * 354.93988 * 20 19 18 22 22 C 1.38628 * 119.99890 * 174.65410 * 20 19 18 23 23 N 1.31577 * 120.00156 * 0.28046 * 22 20 19 24 24 Si 1.86794 * 119.99959 * 180.27847 * 22 20 19 25 25 H 1.48499 * 109.47357 * 60.00325 * 24 22 20 26 26 H 1.48502 * 109.47057 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47393 * 300.00303 * 24 22 20 28 28 H 1.09005 * 109.47033 * 59.99697 * 1 2 3 29 29 H 1.09000 * 109.47238 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47627 * 300.00070 * 1 2 3 31 31 H 1.08998 * 109.47627 * 239.99930 * 2 1 3 32 32 H 1.09001 * 109.47486 * 120.00150 * 2 1 3 33 33 H 1.07999 * 120.46032 * 0.02562 * 7 6 4 34 34 H 1.07992 * 119.42699 * 180.02562 * 8 7 6 35 35 H 1.07998 * 119.61992 * 180.29574 * 10 9 8 36 36 H 0.96999 * 119.99698 * 78.64442 * 12 11 10 37 37 H 1.07996 * 120.00980 * 359.97438 * 14 13 12 38 38 H 1.08000 * 119.89496 * 179.76561 * 15 14 13 39 39 H 1.08003 * 119.89609 * 180.02562 * 16 15 14 40 40 H 1.07998 * 119.99621 * 179.97438 * 17 16 15 41 41 H 0.97000 * 120.00060 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3497 1.5454 0.0005 5 8 4.0898 0.5821 0.0005 6 6 3.9138 2.9094 0.0000 7 6 3.0823 4.0335 0.0766 8 6 3.6512 5.2898 0.0726 9 7 4.9594 5.4465 -0.0023 10 6 5.7850 4.4247 -0.0704 11 6 5.3025 3.1185 -0.0781 12 7 6.1764 2.0423 -0.1557 13 6 6.3652 1.3815 -1.3730 14 6 5.7693 1.8673 -2.5284 15 6 5.9531 1.2092 -3.7295 16 6 6.7347 0.0689 -3.7860 17 6 7.3367 -0.4187 -2.6419 18 6 7.1590 0.2355 -1.4316 19 8 7.7502 -0.2418 -0.3062 20 6 8.5879 -1.2879 -0.4515 21 1 8.7001 -1.7597 -1.4164 22 6 9.3097 -1.7541 0.6363 23 7 9.1729 -1.1791 1.8119 24 14 10.4764 -3.1987 0.4333 25 1 11.5180 -2.8568 -0.5683 26 1 11.1220 -3.5004 1.7362 27 1 9.7163 -4.3877 -0.0291 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0102 3.9183 0.1379 34 1 3.0152 6.1605 0.1319 35 1 6.8490 4.6009 -0.1256 36 1 6.6558 1.7489 0.6348 37 1 5.1582 2.7568 -2.4880 38 1 5.4856 1.5864 -4.6270 39 1 6.8754 -0.4412 -4.7275 40 1 7.9458 -1.3093 -2.6899 41 1 9.6777 -1.5055 2.5731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212596386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:56 Heat of formation + Delta-G solvation = -29.117373 kcal Electronic energy + Delta-G solvation = -27859.968498 eV Core-core repulsion = 23899.612487 eV Total energy + Delta-G solvation = -3960.356012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -40.91625 -39.60711 -38.98727 -36.76069 -36.25848 -35.04461 -32.80259 -32.19990 -31.49245 -30.45241 -29.06097 -27.64060 -25.32403 -25.27759 -23.48601 -22.92297 -21.47299 -21.28998 -20.73319 -18.25394 -17.87575 -17.46374 -17.05768 -16.74372 -16.46307 -16.08159 -15.61094 -15.00387 -14.57672 -14.38456 -14.25018 -13.93178 -13.73797 -13.60803 -13.56241 -13.36903 -13.00819 -12.87663 -12.48854 -12.25407 -11.99475 -11.65930 -11.63458 -11.52526 -10.91742 -10.89905 -10.66514 -10.51637 -10.49538 -10.40894 -10.23193 -9.90258 -9.41657 -9.27619 -8.98040 -8.75259 -7.60030 -6.53480 -6.37731 -3.92821 0.54602 0.96489 2.31751 2.48949 2.57775 2.72408 3.17012 3.17907 3.20243 3.68580 3.81058 4.02691 4.42337 4.51426 4.66227 4.72409 4.85362 4.88959 4.98119 5.12540 5.16923 5.21561 5.24829 5.50326 5.59346 5.65853 5.69002 5.71508 5.80213 5.89077 5.97233 6.08364 6.27139 6.35602 6.47479 6.67324 6.77679 6.93738 7.22062 7.32887 7.49587 7.69474 7.79947 7.89498 8.02059 8.12887 8.29290 9.08798 9.79559 10.80608 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.004121 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.125926 B = 6792.190715 C = 7347.784350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.361 6.361 4 C 0.495 3.505 5 O -0.450 6.450 6 C -0.092 4.092 7 C -0.113 4.113 8 C 0.074 3.926 9 N -0.454 5.454 10 C 0.091 3.909 11 C 0.187 3.813 12 N -0.690 5.690 13 C 0.165 3.835 14 C -0.157 4.157 15 C -0.169 4.169 16 C -0.117 4.117 17 C -0.206 4.206 18 C 0.116 3.884 19 O -0.182 6.182 20 C -0.383 4.383 21 H 0.089 0.911 22 C 0.038 3.962 23 N -0.867 5.867 24 Si 0.938 3.062 25 H -0.271 1.271 26 H -0.279 1.279 27 H -0.272 1.272 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.423 0.577 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.325 7.914 -3.581 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.010 4.010 3 O -0.279 6.279 4 C 0.336 3.664 5 O -0.333 6.333 6 C -0.104 4.104 7 C -0.134 4.134 8 C -0.081 4.081 9 N -0.164 5.164 10 C -0.070 4.070 11 C 0.089 3.911 12 N -0.323 5.323 13 C 0.068 3.932 14 C -0.180 4.180 15 C -0.189 4.189 16 C -0.137 4.137 17 C -0.226 4.226 18 C 0.061 3.939 19 O -0.086 6.086 20 C -0.459 4.459 21 H 0.106 0.894 22 C -0.165 4.165 23 N -0.503 5.503 24 Si 0.763 3.237 25 H -0.196 1.196 26 H -0.204 1.204 27 H -0.197 1.197 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.165 0.835 34 H 0.180 0.820 35 H 0.186 0.814 36 H 0.263 0.737 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.145 0.855 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.774 8.496 -3.152 16.488 hybrid contribution 0.308 -1.971 0.127 1.999 sum -13.466 6.525 -3.025 15.266 Atomic orbital electron populations 1.21792 0.92685 1.02933 1.03275 1.23013 0.95032 0.79957 1.03047 1.86479 1.23908 1.32536 1.85004 1.20822 0.80822 0.89632 0.75162 1.91046 1.59595 1.41385 1.41269 1.20214 0.94157 0.91293 1.04690 1.22439 1.01455 0.92165 0.97326 1.22690 0.91207 0.96531 0.97686 1.67507 1.04699 1.34876 1.09305 1.23434 1.00678 0.86581 0.96288 1.18549 0.87866 0.89833 0.94854 1.41260 1.47794 1.32411 1.10828 1.16808 0.99507 0.91903 0.85030 1.20102 1.04662 1.01475 0.91792 1.20308 1.04003 0.98225 0.96323 1.20573 0.99047 0.96914 0.97146 1.20926 1.06455 1.03155 0.92102 1.18814 0.95350 0.91779 0.87931 1.83877 1.53307 1.45386 1.26063 1.21191 1.19875 1.07373 0.97482 0.89406 1.25198 0.97782 0.99028 0.94517 1.70018 1.40205 1.40237 0.99874 0.85824 0.79739 0.80257 0.77848 1.19618 1.20432 1.19682 0.91559 0.90239 0.91600 0.91004 0.91098 0.83464 0.82031 0.81444 0.73656 0.88039 0.87835 0.87747 0.85491 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 37.15 0.38 -0.87 16 2 C 0.06 0.77 6.20 37.15 0.23 1.00 16 3 O -0.36 -5.07 9.58 -40.58 -0.39 -5.46 16 4 C 0.49 8.38 7.88 34.55 0.27 8.65 16 5 O -0.45 -9.45 13.82 -19.25 -0.27 -9.72 16 6 C -0.09 -1.40 5.72 -104.49 -0.60 -1.99 16 7 C -0.11 -1.29 9.70 -39.02 -0.38 -1.67 16 8 C 0.07 0.80 11.16 -17.61 -0.20 0.60 16 9 N -0.45 -5.98 10.32 -13.11 -0.14 -6.12 16 10 C 0.09 1.30 11.13 -17.30 -0.19 1.11 16 11 C 0.19 3.06 4.46 -83.40 -0.37 2.69 16 12 N -0.69 -13.60 4.09 -7.99 -0.03 -13.63 16 13 C 0.16 3.57 5.12 -83.55 -0.43 3.14 16 14 C -0.16 -3.07 9.27 -39.40 -0.37 -3.44 16 15 C -0.17 -3.15 10.04 -39.56 -0.40 -3.55 16 16 C -0.12 -2.29 10.04 -39.56 -0.40 -2.68 16 17 C -0.21 -4.66 9.16 -39.43 -0.36 -5.02 16 18 C 0.12 2.85 6.67 -38.92 -0.26 2.59 16 19 O -0.18 -5.12 9.01 0.02 0.00 -5.12 16 20 C -0.38 -10.75 9.49 30.88 0.29 -10.46 16 21 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 22 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 23 N -0.87 -25.33 13.67 55.48 0.76 -24.57 16 24 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.15 1.31 7.72 -52.49 -0.40 0.90 16 34 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.17 2.22 8.06 -52.49 -0.42 1.80 16 36 H 0.42 9.06 8.20 -40.82 -0.33 8.73 16 37 H 0.10 1.82 6.88 -52.49 -0.36 1.46 16 38 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -32.85 358.04 -7.16 -40.01 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -4.61 Total: 12.35 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.86 Total: -8.95 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.59 Total: -44.33 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.65 Total: -20.30 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.85 -7.16 -40.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.892 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds