Wall clock time and date at job start Tue Mar 31 2020 16:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45201 * 109.47133 * 2 1 4 4 C 1.34734 * 116.99660 * 179.97438 * 3 2 1 5 5 O 1.21481 * 120.00734 * 0.02562 * 4 3 2 6 6 C 1.47602 * 119.99642 * 179.97438 * 4 3 2 7 7 C 1.40039 * 120.98428 * 3.70885 * 6 4 3 8 8 C 1.37916 * 119.08531 * 180.02562 * 7 6 4 9 9 N 1.31963 * 121.14819 * 0.02562 * 8 7 6 10 10 C 1.31543 * 122.20046 * 359.67748 * 9 8 7 11 11 C 1.39241 * 120.76209 * 0.58688 * 10 9 8 12 12 N 1.38851 * 120.61734 * 179.72572 * 11 10 9 13 13 C 1.39790 * 120.00523 * 258.64494 * 12 11 10 14 14 C 1.38781 * 120.10100 * 5.45266 * 13 12 11 15 15 C 1.38183 * 119.98854 * 180.25822 * 14 13 12 16 16 C 1.38356 * 120.20693 * 359.74248 * 15 14 13 17 17 C 1.38176 * 120.21245 * 359.97438 * 16 15 14 18 18 C 1.38722 * 120.00611 * 359.97438 * 17 16 15 19 19 O 1.35786 * 120.10021 * 180.02562 * 18 17 16 20 20 C 1.34801 * 117.00156 * 5.47720 * 19 18 17 21 21 H 1.07999 * 119.99698 * 354.93988 * 20 19 18 22 22 C 1.38628 * 119.99890 * 174.65410 * 20 19 18 23 23 N 1.31577 * 120.00156 * 0.28046 * 22 20 19 24 24 Si 1.86794 * 119.99959 * 180.27847 * 22 20 19 25 25 H 1.48499 * 109.47357 * 60.00325 * 24 22 20 26 26 H 1.48502 * 109.47057 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47393 * 300.00303 * 24 22 20 28 28 H 1.09005 * 109.47033 * 59.99697 * 1 2 3 29 29 H 1.09000 * 109.47238 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47627 * 300.00070 * 1 2 3 31 31 H 1.08998 * 109.47627 * 239.99930 * 2 1 3 32 32 H 1.09001 * 109.47486 * 120.00150 * 2 1 3 33 33 H 1.07999 * 120.46032 * 0.02562 * 7 6 4 34 34 H 1.07992 * 119.42699 * 180.02562 * 8 7 6 35 35 H 1.07998 * 119.61992 * 180.29574 * 10 9 8 36 36 H 0.96999 * 119.99698 * 78.64442 * 12 11 10 37 37 H 1.07996 * 120.00980 * 359.97438 * 14 13 12 38 38 H 1.08000 * 119.89496 * 179.76561 * 15 14 13 39 39 H 1.08003 * 119.89609 * 180.02562 * 16 15 14 40 40 H 1.07998 * 119.99621 * 179.97438 * 17 16 15 41 41 H 0.97000 * 120.00060 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3497 1.5454 0.0005 5 8 4.0898 0.5821 0.0005 6 6 3.9138 2.9094 0.0000 7 6 3.0823 4.0335 0.0766 8 6 3.6512 5.2898 0.0726 9 7 4.9594 5.4465 -0.0023 10 6 5.7850 4.4247 -0.0704 11 6 5.3025 3.1185 -0.0781 12 7 6.1764 2.0423 -0.1557 13 6 6.3652 1.3815 -1.3730 14 6 5.7693 1.8673 -2.5284 15 6 5.9531 1.2092 -3.7295 16 6 6.7347 0.0689 -3.7860 17 6 7.3367 -0.4187 -2.6419 18 6 7.1590 0.2355 -1.4316 19 8 7.7502 -0.2418 -0.3062 20 6 8.5879 -1.2879 -0.4515 21 1 8.7001 -1.7597 -1.4164 22 6 9.3097 -1.7541 0.6363 23 7 9.1729 -1.1791 1.8119 24 14 10.4764 -3.1987 0.4333 25 1 11.5180 -2.8568 -0.5683 26 1 11.1220 -3.5004 1.7362 27 1 9.7163 -4.3877 -0.0291 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0102 3.9183 0.1379 34 1 3.0152 6.1605 0.1319 35 1 6.8490 4.6009 -0.1256 36 1 6.6558 1.7489 0.6348 37 1 5.1582 2.7568 -2.4880 38 1 5.4856 1.5864 -4.6270 39 1 6.8754 -0.4412 -4.7275 40 1 7.9458 -1.3093 -2.6899 41 1 9.6777 -1.5055 2.5731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212596386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:56 Heat of formation + Delta-G solvation = -49.718587 kcal Electronic energy + Delta-G solvation = -27860.861834 eV Core-core repulsion = 23899.612487 eV Total energy + Delta-G solvation = -3961.249347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -42.14063 -40.92495 -40.52497 -38.33920 -37.70203 -36.47757 -34.23302 -33.88253 -32.38898 -31.75416 -30.73318 -29.11812 -27.28868 -26.46692 -24.62251 -23.98733 -23.08252 -22.69958 -22.06016 -19.77138 -19.40290 -19.17802 -18.32419 -18.02712 -17.67442 -17.34359 -17.17624 -16.30582 -16.06682 -15.86055 -15.49601 -15.44488 -15.38602 -14.98156 -14.91121 -14.47996 -14.44801 -14.21147 -13.71170 -13.52217 -13.43630 -13.12192 -12.95060 -12.61249 -12.57204 -12.52692 -12.30064 -12.12820 -11.87156 -11.60794 -11.57328 -11.27833 -11.02094 -10.76508 -10.52063 -10.10452 -9.29624 -8.42360 -8.18010 -6.04426 -0.61322 -0.07670 0.65379 0.85707 1.33809 1.43060 1.44394 1.47619 1.49163 2.17970 2.38355 2.66546 2.89174 3.24069 3.40041 3.48111 3.49472 3.65915 3.92604 3.94070 4.05154 4.06811 4.14736 4.29447 4.30869 4.52094 4.59367 4.59851 4.66306 4.80378 4.89898 4.95839 4.99413 5.09013 5.10856 5.11854 5.35121 5.41204 5.47806 5.64947 5.82896 6.01081 6.13317 6.51388 6.60745 6.66117 6.82198 7.03439 7.86749 8.80762 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.004121 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.125926 B = 6792.190715 C = 7347.784350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.055 3.945 3 O -0.348 6.348 4 C 0.495 3.505 5 O -0.504 6.504 6 C -0.107 4.107 7 C -0.093 4.093 8 C 0.094 3.906 9 N -0.460 5.460 10 C 0.090 3.910 11 C 0.156 3.844 12 N -0.693 5.693 13 C 0.168 3.832 14 C -0.162 4.162 15 C -0.146 4.146 16 C -0.125 4.125 17 C -0.214 4.214 18 C 0.065 3.935 19 O -0.226 6.226 20 C -0.404 4.404 21 H 0.094 0.906 22 C -0.022 4.022 23 N -0.920 5.920 24 Si 1.014 2.986 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.262 1.262 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.182 0.818 34 H 0.211 0.789 35 H 0.168 0.832 36 H 0.406 0.594 37 H 0.121 0.879 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.001 9.734 -5.578 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.019 4.019 3 O -0.265 6.265 4 C 0.339 3.661 5 O -0.391 6.391 6 C -0.118 4.118 7 C -0.113 4.113 8 C -0.063 4.063 9 N -0.170 5.170 10 C -0.069 4.069 11 C 0.059 3.941 12 N -0.323 5.323 13 C 0.069 3.931 14 C -0.184 4.184 15 C -0.165 4.165 16 C -0.145 4.145 17 C -0.234 4.234 18 C 0.013 3.987 19 O -0.133 6.133 20 C -0.481 4.481 21 H 0.112 0.888 22 C -0.219 4.219 23 N -0.559 5.559 24 Si 0.834 3.166 25 H -0.183 1.183 26 H -0.197 1.197 27 H -0.187 1.187 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.199 0.801 34 H 0.228 0.772 35 H 0.185 0.815 36 H 0.243 0.757 37 H 0.139 0.861 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.136 0.864 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.507 10.373 -5.197 20.176 hybrid contribution 0.824 -2.287 0.614 2.507 sum -15.683 8.087 -4.583 18.230 Atomic orbital electron populations 1.21798 0.89046 1.04485 1.04243 1.23279 0.97736 0.78975 1.01864 1.86484 1.22255 1.33577 1.84232 1.21272 0.81321 0.89908 0.73643 1.91043 1.60855 1.43167 1.43999 1.20276 0.94022 0.91585 1.05963 1.22810 1.02639 0.90927 0.94912 1.23513 0.90602 0.97805 0.94337 1.67619 1.05891 1.33998 1.09451 1.23340 1.01129 0.86022 0.96421 1.18739 0.88052 0.89403 0.97911 1.41229 1.48265 1.33171 1.09654 1.17091 0.98355 0.91051 0.86571 1.20399 1.04530 1.02155 0.91356 1.20862 1.01656 0.96708 0.97311 1.20920 0.98722 0.97525 0.97313 1.21113 1.06586 1.02849 0.92833 1.19371 0.97344 0.93838 0.88121 1.83845 1.55011 1.46389 1.28044 1.21660 1.20340 1.07968 0.98130 0.88824 1.26425 0.99469 1.02132 0.93908 1.70174 1.42166 1.42656 1.00877 0.84718 0.77363 0.76327 0.78240 1.18261 1.19710 1.18655 0.90530 0.88421 0.90580 0.92326 0.92393 0.80104 0.77212 0.81496 0.75661 0.86086 0.83587 0.84231 0.86428 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 10.29 71.98 0.74 -1.26 16 2 C 0.06 1.33 6.20 71.98 0.45 1.78 16 3 O -0.35 -9.42 9.58 -56.44 -0.54 -9.96 16 4 C 0.50 16.93 7.88 70.29 0.55 17.48 16 5 O -0.50 -22.40 13.82 19.90 0.27 -22.12 16 6 C -0.11 -3.15 5.72 -19.78 -0.11 -3.26 16 7 C -0.09 -1.77 9.70 22.63 0.22 -1.55 16 8 C 0.09 1.59 11.16 84.60 0.94 2.53 16 9 N -0.46 -10.88 10.32 -195.41 -2.02 -12.90 16 10 C 0.09 2.54 11.13 84.98 0.95 3.48 16 11 C 0.16 5.16 4.46 38.86 0.17 5.33 16 12 N -0.69 -29.15 4.09 -179.20 -0.73 -29.88 16 13 C 0.17 7.59 5.12 38.31 0.20 7.78 16 14 C -0.16 -6.18 9.27 22.39 0.21 -5.97 16 15 C -0.15 -5.09 10.04 22.28 0.22 -4.87 16 16 C -0.13 -4.72 10.04 22.28 0.22 -4.50 16 17 C -0.21 -10.01 9.16 22.37 0.20 -9.81 16 18 C 0.06 3.40 6.67 22.70 0.15 3.55 16 19 O -0.23 -13.79 9.01 -22.84 -0.21 -14.00 16 20 C -0.40 -24.28 9.49 67.91 0.64 -23.63 16 21 H 0.09 5.24 5.21 -2.91 -0.02 5.23 16 22 C -0.02 -1.31 5.49 84.82 0.47 -0.84 16 23 N -0.92 -57.28 13.67 21.61 0.30 -56.98 16 24 Si 1.01 44.46 29.55 68.60 2.03 46.48 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 28 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.18 2.25 7.72 -2.91 -0.02 2.23 16 34 H 0.21 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.17 4.56 8.06 -2.91 -0.02 4.54 16 36 H 0.41 19.31 8.20 -92.71 -0.76 18.55 16 37 H 0.12 4.12 6.88 -2.91 -0.02 4.10 16 38 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 39 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 40 H 0.12 5.57 5.64 -2.91 -0.02 5.56 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -79.14 358.04 5.65 -73.49 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: 0.32 Total: 39.62 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 6.23 Total: -13.75 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -2.45 Total: -99.76 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -0.47 Total: -46.08 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -79.14 5.65 -73.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.770 kcal (2) G-P(sol) polarization free energy of solvation -79.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds