Wall clock time and date at job start Tue Mar 31 2020 16:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.47063 * 2 1 4 4 C 1.34708 * 116.99813 * 180.02562 * 3 2 1 5 5 O 1.21467 * 120.00219 * 0.02562 * 4 3 2 6 6 C 1.47744 * 119.99824 * 180.02562 * 4 3 2 7 7 C 1.39635 * 120.52584 * 0.02562 * 6 4 3 8 8 N 1.31658 * 120.72892 * 179.97438 * 7 6 4 9 9 C 1.31880 * 121.97339 * 359.76671 * 8 7 6 10 10 C 1.39020 * 120.98130 * 0.50444 * 9 8 7 11 11 N 1.39738 * 120.42602 * 179.76453 * 10 9 8 12 12 C 1.39780 * 120.00262 * 319.96638 * 11 10 9 13 13 C 1.38783 * 120.10416 * 352.45934 * 12 11 10 14 14 C 1.38176 * 119.99182 * 179.97438 * 13 12 11 15 15 C 1.38359 * 120.20695 * 0.02562 * 14 13 12 16 16 C 1.38166 * 120.21459 * 359.97438 * 15 14 13 17 17 C 1.38724 * 120.00800 * 359.97438 * 16 15 14 18 18 O 1.35788 * 120.10460 * 180.02562 * 17 16 15 19 19 C 1.34795 * 117.00021 * 353.60646 * 18 17 16 20 20 H 1.07999 * 120.00151 * 5.27942 * 19 18 17 21 21 C 1.38632 * 119.99887 * 185.28701 * 19 18 17 22 22 N 1.31572 * 119.99925 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47299 * 59.99647 * 23 21 19 25 25 H 1.48494 * 109.47044 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47046 * 300.00002 * 23 21 19 27 27 C 1.39082 * 119.15304 * 359.48642 * 10 9 8 28 28 H 1.08996 * 109.46672 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46400 * 299.99673 * 1 2 3 30 30 H 1.08996 * 109.47361 * 59.99821 * 1 2 3 31 31 H 1.09005 * 109.47013 * 240.00590 * 2 1 3 32 32 H 1.08996 * 109.47361 * 120.00179 * 2 1 3 33 33 H 1.08003 * 119.63717 * 359.97438 * 7 6 4 34 34 H 1.07995 * 119.51409 * 180.26649 * 9 8 7 35 35 H 0.97006 * 120.00165 * 139.95943 * 11 10 9 36 36 H 1.07996 * 120.00239 * 0.25990 * 13 12 11 37 37 H 1.07998 * 119.89779 * 179.97438 * 14 13 12 38 38 H 1.08003 * 119.88982 * 179.97438 * 15 14 13 39 39 H 1.07998 * 120.00105 * 180.02562 * 16 15 14 40 40 H 0.97003 * 119.99837 * 180.02562 * 22 21 19 41 41 H 1.08006 * 120.89551 * 180.23003 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 -0.0005 5 8 4.0894 0.5822 -0.0015 6 6 3.9142 2.9107 0.0000 7 6 3.0738 4.0258 0.0016 8 7 3.5727 5.2442 0.0026 9 6 4.8726 5.4666 0.0067 10 6 5.7789 4.4124 -0.0003 11 7 7.1539 4.6614 -0.0009 12 6 7.6755 5.7022 -0.7745 13 6 6.8572 6.3883 -1.6609 14 6 7.3751 7.4171 -2.4241 15 6 8.7089 7.7664 -2.3085 16 6 9.5313 7.0891 -1.4288 17 6 9.0204 6.0554 -0.6574 18 8 9.8267 5.3888 0.2082 19 6 11.1404 5.6892 0.1758 20 1 11.4958 6.4899 -0.4558 21 6 12.0352 4.9703 0.9533 22 7 11.6021 3.9951 1.7230 23 14 13.8557 5.3862 0.9080 24 1 14.0531 6.7928 1.3416 25 1 14.5937 4.4786 1.8226 26 1 14.3675 5.2185 -0.4760 27 6 5.2996 3.1068 -0.0010 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0026 3.8874 0.0020 34 1 5.2385 6.4826 0.0117 35 1 7.7466 4.1120 0.5358 36 1 5.8146 6.1212 -1.7507 37 1 6.7370 7.9498 -3.1137 38 1 9.1084 8.5711 -2.9079 39 1 10.5718 7.3648 -1.3410 40 1 12.2282 3.4924 2.2673 41 1 5.9785 2.2668 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212596491.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:37 Heat of formation + Delta-G solvation = -57.211092 kcal Electronic energy + Delta-G solvation = -26402.260355 eV Core-core repulsion = 22440.686108 eV Total energy + Delta-G solvation = -3961.574247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -42.11502 -41.28611 -40.50548 -38.36217 -37.78286 -36.73001 -34.26280 -33.81137 -32.63942 -31.64941 -30.85834 -29.19435 -27.36761 -26.43940 -24.74583 -23.96195 -23.08567 -22.92662 -21.96223 -19.87568 -19.39913 -19.26178 -18.38764 -17.90053 -17.68425 -17.56315 -17.09978 -16.77195 -16.30751 -15.83243 -15.61263 -15.45963 -15.32755 -15.01019 -14.66227 -14.40390 -14.32181 -14.22375 -13.71946 -13.58943 -13.51718 -13.43279 -12.96611 -12.67665 -12.53873 -12.52197 -12.30113 -12.15606 -12.08350 -12.01717 -11.56548 -11.29615 -11.00117 -10.78065 -10.74523 -10.12072 -9.27474 -8.45304 -8.19207 -6.08431 -0.69875 -0.04353 0.62793 0.81804 1.32324 1.35694 1.40186 1.45229 1.50416 2.14426 2.24768 2.60267 2.87232 3.17611 3.27451 3.42520 3.56693 3.60858 3.71441 3.94668 4.02304 4.08214 4.11239 4.15656 4.32255 4.36443 4.54085 4.57478 4.73132 4.76832 4.88491 4.93392 4.96169 5.08134 5.10305 5.11735 5.28833 5.36872 5.43767 5.61707 5.81033 5.96513 6.07678 6.38927 6.44073 6.52785 6.73946 7.01070 7.79540 8.77233 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.002768 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.469207 B =10111.828953 C =11619.063662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.345 6.345 4 C 0.523 3.477 5 O -0.533 6.533 6 C -0.153 4.153 7 C 0.132 3.868 8 N -0.466 5.466 9 C 0.097 3.903 10 C 0.123 3.877 11 N -0.675 5.675 12 C 0.113 3.887 13 C -0.147 4.147 14 C -0.145 4.145 15 C -0.109 4.109 16 C -0.211 4.211 17 C 0.069 3.931 18 O -0.227 6.227 19 C -0.405 4.405 20 H 0.100 0.900 21 C -0.021 4.021 22 N -0.919 5.919 23 Si 1.012 2.988 24 H -0.258 1.258 25 H -0.276 1.276 26 H -0.260 1.260 27 C -0.066 4.066 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.201 0.799 34 H 0.174 0.826 35 H 0.411 0.589 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.122 0.878 40 H 0.270 0.730 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.663 -0.904 -5.675 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.261 6.261 4 C 0.368 3.632 5 O -0.424 6.424 6 C -0.157 4.157 7 C -0.027 4.027 8 N -0.174 5.174 9 C -0.063 4.063 10 C 0.022 3.978 11 N -0.299 5.299 12 C 0.016 3.984 13 C -0.169 4.169 14 C -0.164 4.164 15 C -0.128 4.128 16 C -0.231 4.231 17 C 0.018 3.982 18 O -0.134 6.134 19 C -0.481 4.481 20 H 0.118 0.882 21 C -0.219 4.219 22 N -0.558 5.558 23 Si 0.832 3.168 24 H -0.183 1.183 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.095 4.095 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.218 0.782 34 H 0.191 0.809 35 H 0.247 0.753 36 H 0.158 0.842 37 H 0.171 0.829 38 H 0.162 0.838 39 H 0.140 0.860 40 H 0.079 0.921 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.069 -0.758 -5.420 20.802 hybrid contribution 2.320 -1.359 0.543 2.743 sum -17.749 -2.118 -4.877 18.529 Atomic orbital electron populations 1.21835 0.89817 1.04521 1.04060 1.23408 0.97362 0.78493 1.02811 1.86524 1.21797 1.34276 1.83536 1.20890 0.81328 0.88932 0.72028 1.90851 1.61304 1.43203 1.47067 1.19934 0.93378 0.92222 1.10118 1.23473 1.01634 0.85348 0.92228 1.67845 1.13255 1.24150 1.12139 1.23268 0.87974 0.99650 0.95362 1.18665 0.84994 0.93772 1.00364 1.41857 1.03924 1.34956 1.49138 1.17281 0.90220 0.93616 0.97277 1.20862 0.99518 0.98761 0.97743 1.20988 0.95468 0.98604 1.01344 1.21078 0.93765 0.99929 0.98031 1.21173 1.01359 0.99067 1.01456 1.19413 0.90486 0.94712 0.93630 1.83837 1.19103 1.58808 1.51676 1.21683 0.79996 1.18602 1.27861 0.88246 1.26422 1.04900 0.95216 0.95332 1.70153 1.37245 1.21594 1.26807 0.84723 0.74302 0.78744 0.78983 1.18267 1.20073 1.18426 1.21576 0.94843 0.96515 0.96541 0.88156 0.90972 0.90881 0.91120 0.91217 0.78222 0.80925 0.75272 0.84197 0.82919 0.83791 0.85996 0.92112 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 71.98 0.74 -0.51 16 2 C 0.05 0.80 6.19 71.98 0.45 1.25 16 3 O -0.34 -6.87 9.49 -56.17 -0.53 -7.40 16 4 C 0.52 13.52 7.91 70.34 0.56 14.07 16 5 O -0.53 -17.06 16.21 19.94 0.32 -16.74 16 6 C -0.15 -3.94 5.89 -20.02 -0.12 -4.05 16 7 C 0.13 2.92 10.78 85.06 0.92 3.84 16 8 N -0.47 -11.76 10.34 -194.19 -2.01 -13.76 16 9 C 0.10 2.72 8.53 84.87 0.72 3.44 16 10 C 0.12 3.90 5.95 38.27 0.23 4.12 16 11 N -0.68 -25.77 5.48 -179.90 -0.99 -26.76 16 12 C 0.11 4.53 6.46 38.32 0.25 4.78 16 13 C -0.15 -4.76 8.00 22.39 0.18 -4.58 16 14 C -0.15 -4.20 10.04 22.28 0.22 -3.98 16 15 C -0.11 -3.49 10.04 22.28 0.22 -3.26 16 16 C -0.21 -8.67 9.16 22.37 0.20 -8.47 16 17 C 0.07 3.24 6.66 22.70 0.15 3.40 16 18 O -0.23 -12.76 9.02 -22.81 -0.21 -12.96 16 19 C -0.41 -22.66 9.49 67.91 0.64 -22.02 16 20 H 0.10 5.11 5.21 -2.91 -0.02 5.10 16 21 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 22 N -0.92 -54.89 13.67 21.61 0.30 -54.59 16 23 Si 1.01 42.27 29.55 68.60 2.03 44.29 16 24 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 25 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 26 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 27 C -0.07 -1.98 9.65 22.88 0.22 -1.76 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.20 3.06 7.62 -2.91 -0.02 3.04 16 34 H 0.17 4.68 6.47 -2.91 -0.02 4.66 16 35 H 0.41 17.50 8.22 -92.70 -0.76 16.74 16 36 H 0.14 3.94 5.24 -2.91 -0.02 3.92 16 37 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.12 5.11 5.65 -2.91 -0.02 5.09 16 40 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.14 4.45 7.73 -2.91 -0.02 4.43 16 Total: -1.00 -69.45 356.88 5.30 -64.15 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.33 Total: 38.22 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 6.05 Total: -14.44 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -2.70 Total: -95.12 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.42 Total: -37.11 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -69.45 5.30 -64.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596491.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.934 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds