Wall clock time and date at job start Tue Mar 31 2020 16:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.47299 * 2 1 4 4 C 1.34747 * 117.00138 * 180.02562 * 3 2 1 5 5 O 1.21495 * 119.99782 * 359.97438 * 4 3 2 6 6 C 1.47589 * 120.00321 * 180.02562 * 4 3 2 7 7 N 1.32936 * 119.80569 * 4.27653 * 6 4 3 8 8 C 1.31317 * 121.70697 * 180.29491 * 7 6 4 9 9 C 1.38875 * 121.14070 * 359.70162 * 8 7 6 10 10 C 1.38179 * 119.48584 * 359.97438 * 9 8 7 11 11 C 1.39625 * 118.42290 * 0.02562 * 10 9 8 12 12 N 1.38821 * 120.56926 * 179.97438 * 11 10 9 13 13 C 1.39804 * 119.99990 * 258.34663 * 12 11 10 14 14 C 1.38774 * 120.10603 * 5.82339 * 13 12 11 15 15 C 1.38183 * 119.99208 * 180.30003 * 14 13 12 16 16 C 1.38356 * 120.20382 * 359.69913 * 15 14 13 17 17 C 1.38175 * 120.21419 * 0.02562 * 16 15 14 18 18 C 1.38723 * 120.00541 * 359.97438 * 17 16 15 19 19 O 1.35782 * 120.10240 * 179.97438 * 18 17 16 20 20 C 1.34806 * 116.99702 * 5.03871 * 19 18 17 21 21 H 1.07999 * 120.00207 * 354.93320 * 20 19 18 22 22 C 1.38635 * 119.99629 * 174.65562 * 20 19 18 23 23 N 1.31575 * 119.99783 * 180.27348 * 22 20 19 24 24 Si 1.86796 * 120.00214 * 0.27485 * 22 20 19 25 25 H 1.48504 * 109.47023 * 89.99818 * 24 22 20 26 26 H 1.48492 * 109.47553 * 209.99867 * 24 22 20 27 27 H 1.48503 * 109.47111 * 330.00149 * 24 22 20 28 28 H 1.09000 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47064 * 300.00160 * 1 2 3 30 30 H 1.08998 * 109.46950 * 59.99828 * 1 2 3 31 31 H 1.09000 * 109.47064 * 239.99840 * 2 1 3 32 32 H 1.08999 * 109.47382 * 119.99530 * 2 1 3 33 33 H 1.08008 * 119.42950 * 179.72497 * 8 7 6 34 34 H 1.07997 * 120.25533 * 180.02562 * 9 8 7 35 35 H 1.07995 * 120.78872 * 180.02562 * 10 9 8 36 36 H 0.96999 * 120.00334 * 78.34684 * 12 11 10 37 37 H 1.08000 * 120.00512 * 0.02562 * 14 13 12 38 38 H 1.07996 * 119.89630 * 179.72801 * 15 14 13 39 39 H 1.08001 * 119.89138 * 180.02562 * 16 15 14 40 40 H 1.08001 * 119.99488 * 180.02562 * 17 16 15 41 41 H 0.96999 * 119.99711 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0899 0.5820 -0.0005 6 6 3.9141 2.9093 0.0000 7 7 3.1038 3.9596 0.0870 8 6 3.5650 5.1891 0.0851 9 6 4.9271 5.4451 -0.0024 10 6 5.8135 4.3886 -0.0884 11 6 5.3016 3.0896 -0.0846 12 7 6.1518 1.9954 -0.1696 13 6 6.3060 1.3227 -1.3854 14 6 5.7065 1.8169 -2.5353 15 6 5.8553 1.1467 -3.7345 16 6 6.6061 -0.0139 -3.7948 17 6 7.2115 -0.5103 -2.6562 18 6 7.0679 0.1554 -1.4477 19 8 7.6614 -0.3310 -0.3275 20 6 8.4617 -1.4056 -0.4764 21 1 8.5423 -1.8897 -1.4384 22 6 9.1856 -1.8857 0.6041 23 7 9.9708 -2.9312 0.4575 24 14 9.0462 -1.0483 2.2680 25 1 7.9457 -1.6724 3.0456 26 1 10.3243 -1.2021 3.0082 27 1 8.7577 0.3953 2.0730 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.8729 6.0156 0.1530 34 1 5.2908 6.4620 -0.0024 35 1 6.8770 4.5635 -0.1569 36 1 6.6389 1.6976 0.6146 37 1 5.1200 2.7227 -2.4920 38 1 5.3844 1.5302 -4.6275 39 1 6.7194 -0.5334 -4.7348 40 1 7.7971 -1.4163 -2.7074 41 1 10.4770 -3.2674 1.2135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212597114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:41 Heat of formation + Delta-G solvation = -24.384630 kcal Electronic energy + Delta-G solvation = -28026.876825 eV Core-core repulsion = 24066.726041 eV Total energy + Delta-G solvation = -3960.150784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 4.99 seconds Orbital eigenvalues (eV) -41.00804 -39.56439 -39.14313 -36.88402 -36.30152 -35.20290 -32.68395 -32.31248 -31.59512 -30.61933 -29.26339 -27.86923 -25.31599 -25.18283 -23.54915 -22.95907 -21.41733 -21.27680 -20.94345 -18.25147 -17.88746 -17.63699 -17.22474 -16.82818 -16.43425 -16.19977 -15.84295 -15.19960 -14.56306 -14.39317 -14.15068 -13.86741 -13.69788 -13.55225 -13.49372 -13.35250 -13.10030 -12.82051 -12.65044 -12.25477 -12.18507 -11.91497 -11.70861 -11.56585 -11.01788 -10.86808 -10.69841 -10.55747 -10.40502 -10.31569 -10.20000 -10.03597 -9.44753 -9.38852 -9.12167 -8.81238 -7.71033 -6.68517 -6.35224 -3.98452 0.39476 0.99193 2.22038 2.37238 2.55526 2.62322 3.22605 3.26690 3.36420 3.59249 3.69676 4.11575 4.25984 4.56289 4.63726 4.69117 4.80681 4.85220 4.93183 4.97491 5.09586 5.15179 5.20656 5.28727 5.57488 5.60504 5.74177 5.80392 5.83646 5.86743 5.92113 5.96719 6.19420 6.20411 6.48865 6.54204 6.65512 6.87612 7.14353 7.39674 7.49927 7.56956 7.70028 7.94729 7.98916 8.09124 8.14185 9.00676 9.64322 10.73218 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010314 B = 0.004569 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.058153 B = 6126.910270 C = 6405.797339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.342 6.342 4 C 0.509 3.491 5 O -0.456 6.456 6 C 0.077 3.923 7 N -0.429 5.429 8 C 0.084 3.916 9 C -0.133 4.133 10 C -0.094 4.094 11 C 0.190 3.810 12 N -0.692 5.692 13 C 0.165 3.835 14 C -0.157 4.157 15 C -0.161 4.161 16 C -0.118 4.118 17 C -0.191 4.191 18 C 0.122 3.878 19 O -0.223 6.223 20 C -0.378 4.378 21 H 0.105 0.895 22 C 0.061 3.939 23 N -0.884 5.884 24 Si 0.905 3.095 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.263 1.263 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.165 0.835 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.417 0.583 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.134 0.866 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.855 14.878 -1.172 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.259 6.259 4 C 0.350 3.650 5 O -0.339 6.339 6 C -0.061 4.061 7 N -0.141 5.141 8 C -0.077 4.077 9 C -0.153 4.153 10 C -0.122 4.122 11 C 0.092 3.908 12 N -0.325 5.325 13 C 0.068 3.932 14 C -0.180 4.180 15 C -0.180 4.180 16 C -0.138 4.138 17 C -0.211 4.211 18 C 0.069 3.931 19 O -0.129 6.129 20 C -0.454 4.454 21 H 0.122 0.878 22 C -0.141 4.141 23 N -0.523 5.523 24 Si 0.732 3.268 25 H -0.201 1.201 26 H -0.210 1.210 27 H -0.188 1.188 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.182 0.818 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.257 0.743 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.152 0.848 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.468 14.303 -0.818 20.361 hybrid contribution 1.117 0.057 0.886 1.427 sum -13.350 14.359 0.068 19.607 Atomic orbital electron populations 1.21771 0.92702 1.02734 1.03369 1.23042 0.95203 0.80320 1.02869 1.86631 1.23340 1.31778 1.84175 1.20555 0.81108 0.88581 0.74779 1.91043 1.59917 1.40655 1.42246 1.20748 0.90238 0.91070 1.04025 1.67672 1.38794 0.98955 1.08644 1.22854 0.93950 0.93752 0.97175 1.22397 0.94333 1.00370 0.98206 1.22156 1.01747 0.91080 0.97208 1.18241 0.88577 0.88858 0.95170 1.41232 1.49155 1.30871 1.11246 1.16803 0.99882 0.91477 0.85052 1.20110 1.04751 1.01293 0.91849 1.20378 1.03638 0.97591 0.96424 1.20637 0.99062 0.96646 0.97417 1.21065 1.05393 1.02729 0.91887 1.18521 0.95731 0.91514 0.87361 1.83470 1.56458 1.44600 1.28346 1.20699 1.20980 1.03683 1.00073 0.87784 1.24406 0.94772 0.95938 0.98985 1.69654 1.27034 1.23165 1.32476 0.86195 0.77401 0.80700 0.82535 1.20065 1.21003 1.18774 0.90340 0.91610 0.91543 0.91038 0.91240 0.81801 0.83851 0.83370 0.74311 0.87914 0.87575 0.87393 0.84811 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.29 37.16 0.38 -1.03 16 2 C 0.06 0.79 6.20 37.16 0.23 1.02 16 3 O -0.34 -5.43 10.04 -40.62 -0.41 -5.84 16 4 C 0.51 9.06 7.88 34.55 0.27 9.34 16 5 O -0.46 -9.46 13.53 -19.26 -0.26 -9.72 16 6 C 0.08 1.22 6.51 -82.85 -0.54 0.68 16 7 N -0.43 -5.91 10.12 -9.67 -0.10 -6.00 16 8 C 0.08 0.83 11.17 -17.54 -0.20 0.63 16 9 C -0.13 -1.16 10.10 -39.37 -0.40 -1.56 16 10 C -0.09 -1.09 10.11 -39.09 -0.40 -1.49 16 11 C 0.19 2.92 4.47 -83.45 -0.37 2.55 16 12 N -0.69 -12.85 4.03 -8.02 -0.03 -12.88 16 13 C 0.16 3.40 4.91 -83.54 -0.41 2.99 16 14 C -0.16 -2.95 9.25 -39.40 -0.36 -3.31 16 15 C -0.16 -2.90 10.04 -39.56 -0.40 -3.29 16 16 C -0.12 -2.26 10.04 -39.56 -0.40 -2.66 16 17 C -0.19 -4.27 9.16 -39.43 -0.36 -4.63 16 18 C 0.12 2.88 6.67 -38.92 -0.26 2.62 16 19 O -0.22 -5.86 7.84 0.02 0.00 -5.86 16 20 C -0.38 -10.75 9.94 30.88 0.31 -10.44 16 21 H 0.10 3.04 5.44 -52.49 -0.29 2.75 16 22 C 0.06 1.73 5.49 -17.51 -0.10 1.63 16 23 N -0.88 -25.87 13.96 55.48 0.77 -25.09 16 24 Si 0.91 21.94 28.62 -169.99 -4.86 17.08 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.42 8.14 8.20 -40.82 -0.33 7.81 16 37 H 0.10 1.77 6.87 -52.49 -0.36 1.40 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.13 3.12 5.63 -52.49 -0.30 2.83 16 41 H 0.28 7.52 8.31 -40.82 -0.34 7.19 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -32.99 357.13 -7.14 -40.13 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -4.64 Total: 9.75 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.99 Total: -6.94 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.64 Total: -43.97 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.67 Total: -21.42 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.86 Total: 17.08 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.99 -7.14 -40.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212597114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.747 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.99 seconds