Wall clock time and date at job start Tue Mar 31 2020 16:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.47299 * 2 1 4 4 C 1.34747 * 117.00138 * 180.02562 * 3 2 1 5 5 O 1.21495 * 119.99782 * 359.97438 * 4 3 2 6 6 C 1.47589 * 120.00321 * 180.02562 * 4 3 2 7 7 N 1.32936 * 119.80569 * 4.27653 * 6 4 3 8 8 C 1.31317 * 121.70697 * 180.29491 * 7 6 4 9 9 C 1.38875 * 121.14070 * 359.70162 * 8 7 6 10 10 C 1.38179 * 119.48584 * 359.97438 * 9 8 7 11 11 C 1.39625 * 118.42290 * 0.02562 * 10 9 8 12 12 N 1.38821 * 120.56926 * 179.97438 * 11 10 9 13 13 C 1.39804 * 119.99990 * 258.34663 * 12 11 10 14 14 C 1.38774 * 120.10603 * 5.82339 * 13 12 11 15 15 C 1.38183 * 119.99208 * 180.30003 * 14 13 12 16 16 C 1.38356 * 120.20382 * 359.69913 * 15 14 13 17 17 C 1.38175 * 120.21419 * 0.02562 * 16 15 14 18 18 C 1.38723 * 120.00541 * 359.97438 * 17 16 15 19 19 O 1.35782 * 120.10240 * 179.97438 * 18 17 16 20 20 C 1.34806 * 116.99702 * 5.03871 * 19 18 17 21 21 H 1.07999 * 120.00207 * 354.93320 * 20 19 18 22 22 C 1.38635 * 119.99629 * 174.65562 * 20 19 18 23 23 N 1.31575 * 119.99783 * 180.27348 * 22 20 19 24 24 Si 1.86796 * 120.00214 * 0.27485 * 22 20 19 25 25 H 1.48504 * 109.47023 * 89.99818 * 24 22 20 26 26 H 1.48492 * 109.47553 * 209.99867 * 24 22 20 27 27 H 1.48503 * 109.47111 * 330.00149 * 24 22 20 28 28 H 1.09000 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47064 * 300.00160 * 1 2 3 30 30 H 1.08998 * 109.46950 * 59.99828 * 1 2 3 31 31 H 1.09000 * 109.47064 * 239.99840 * 2 1 3 32 32 H 1.08999 * 109.47382 * 119.99530 * 2 1 3 33 33 H 1.08008 * 119.42950 * 179.72497 * 8 7 6 34 34 H 1.07997 * 120.25533 * 180.02562 * 9 8 7 35 35 H 1.07995 * 120.78872 * 180.02562 * 10 9 8 36 36 H 0.96999 * 120.00334 * 78.34684 * 12 11 10 37 37 H 1.08000 * 120.00512 * 0.02562 * 14 13 12 38 38 H 1.07996 * 119.89630 * 179.72801 * 15 14 13 39 39 H 1.08001 * 119.89138 * 180.02562 * 16 15 14 40 40 H 1.08001 * 119.99488 * 180.02562 * 17 16 15 41 41 H 0.96999 * 119.99711 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0899 0.5820 -0.0005 6 6 3.9141 2.9093 0.0000 7 7 3.1038 3.9596 0.0870 8 6 3.5650 5.1891 0.0851 9 6 4.9271 5.4451 -0.0024 10 6 5.8135 4.3886 -0.0884 11 6 5.3016 3.0896 -0.0846 12 7 6.1518 1.9954 -0.1696 13 6 6.3060 1.3227 -1.3854 14 6 5.7065 1.8169 -2.5353 15 6 5.8553 1.1467 -3.7345 16 6 6.6061 -0.0139 -3.7948 17 6 7.2115 -0.5103 -2.6562 18 6 7.0679 0.1554 -1.4477 19 8 7.6614 -0.3310 -0.3275 20 6 8.4617 -1.4056 -0.4764 21 1 8.5423 -1.8897 -1.4384 22 6 9.1856 -1.8857 0.6041 23 7 9.9708 -2.9312 0.4575 24 14 9.0462 -1.0483 2.2680 25 1 7.9457 -1.6724 3.0456 26 1 10.3243 -1.2021 3.0082 27 1 8.7577 0.3953 2.0730 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.8729 6.0156 0.1530 34 1 5.2908 6.4620 -0.0024 35 1 6.8770 4.5635 -0.1569 36 1 6.6389 1.6976 0.6146 37 1 5.1200 2.7227 -2.4920 38 1 5.3844 1.5302 -4.6275 39 1 6.7194 -0.5334 -4.7348 40 1 7.7971 -1.4163 -2.7074 41 1 10.4770 -3.2674 1.2135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212597114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:40 Heat of formation + Delta-G solvation = -45.400954 kcal Electronic energy + Delta-G solvation = -28027.788161 eV Core-core repulsion = 24066.726041 eV Total energy + Delta-G solvation = -3961.062121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.16583 -40.96571 -40.53986 -38.47683 -37.69652 -36.55939 -34.41790 -33.62567 -32.57900 -31.80947 -30.91169 -29.30454 -27.20002 -26.35897 -24.63872 -23.99762 -22.96497 -22.74873 -22.18231 -19.81433 -19.38513 -19.36103 -18.42317 -17.99219 -17.72810 -17.48093 -17.23101 -16.37674 -16.15494 -15.70738 -15.58460 -15.54084 -15.36127 -14.92150 -14.67639 -14.44214 -14.28854 -14.18131 -14.03165 -13.65666 -13.58960 -13.35639 -12.92280 -12.72304 -12.65836 -12.54548 -12.33808 -12.05345 -11.97467 -11.57086 -11.51440 -11.34257 -10.94886 -10.91081 -10.55021 -10.18140 -9.37507 -8.47729 -8.26570 -6.14866 -0.63229 0.08036 0.59477 0.78492 1.26309 1.32188 1.38042 1.45263 1.50144 2.26018 2.31087 2.68578 2.79807 3.09310 3.13861 3.16058 3.67542 3.86853 3.93173 3.93835 4.02773 4.05243 4.18345 4.28059 4.29128 4.41553 4.51840 4.55785 4.75549 4.84150 4.88214 4.99323 5.01213 5.05361 5.09305 5.23954 5.35435 5.46957 5.53863 5.66336 5.78114 5.90788 6.11066 6.45545 6.49879 6.61244 6.84931 6.87468 7.64763 8.64652 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010314 B = 0.004569 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.058153 B = 6126.910270 C = 6405.797339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 O -0.344 6.344 4 C 0.505 3.495 5 O -0.502 6.502 6 C 0.053 3.947 7 N -0.449 5.449 8 C 0.094 3.906 9 C -0.100 4.100 10 C -0.095 4.095 11 C 0.162 3.838 12 N -0.694 5.694 13 C 0.177 3.823 14 C -0.160 4.160 15 C -0.136 4.136 16 C -0.128 4.128 17 C -0.203 4.203 18 C 0.073 3.927 19 O -0.243 6.243 20 C -0.386 4.386 21 H 0.077 0.923 22 C 0.008 3.992 23 N -0.928 5.928 24 Si 0.968 3.032 25 H -0.277 1.277 26 H -0.267 1.267 27 H -0.257 1.257 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.209 0.791 34 H 0.195 0.805 35 H 0.162 0.838 36 H 0.407 0.593 37 H 0.125 0.875 38 H 0.149 0.851 39 H 0.137 0.863 40 H 0.110 0.890 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.077 19.535 -1.547 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 O -0.260 6.260 4 C 0.347 3.653 5 O -0.388 6.388 6 C -0.083 4.083 7 N -0.160 5.160 8 C -0.068 4.068 9 C -0.120 4.120 10 C -0.122 4.122 11 C 0.065 3.935 12 N -0.325 5.325 13 C 0.078 3.922 14 C -0.183 4.183 15 C -0.155 4.155 16 C -0.148 4.148 17 C -0.223 4.223 18 C 0.022 3.978 19 O -0.151 6.151 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.189 4.189 23 N -0.570 5.570 24 Si 0.791 3.209 25 H -0.202 1.202 26 H -0.192 1.192 27 H -0.181 1.181 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.226 0.774 34 H 0.212 0.788 35 H 0.180 0.820 36 H 0.244 0.756 37 H 0.143 0.857 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.127 0.873 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.746 19.011 -1.219 25.364 hybrid contribution 1.567 -1.117 0.815 2.090 sum -15.179 17.893 -0.404 23.468 Atomic orbital electron populations 1.21778 0.89447 1.04377 1.03934 1.23296 0.97693 0.79304 1.01928 1.86641 1.22633 1.33062 1.83661 1.21153 0.81276 0.89355 0.73471 1.91023 1.60791 1.42286 1.44718 1.20506 0.90434 0.90750 1.06571 1.67684 1.38929 0.99874 1.09553 1.23719 0.95528 0.93236 0.94335 1.22920 0.93234 1.01755 0.94094 1.22364 1.03089 0.89969 0.96810 1.18542 0.88057 0.89221 0.97692 1.41237 1.49386 1.31732 1.10104 1.16987 0.98203 0.90270 0.86726 1.20423 1.04457 1.02062 0.91353 1.20907 1.01058 0.95936 0.97588 1.20925 0.99004 0.97515 0.97320 1.21140 1.05788 1.02164 0.93226 1.19011 0.97867 0.93559 0.87319 1.83411 1.57614 1.44416 1.29705 1.20639 1.21641 1.04603 0.99364 0.90510 1.25183 0.94561 0.96659 1.02503 1.69741 1.28611 1.24838 1.33769 0.85257 0.77786 0.79834 0.78027 1.20240 1.19227 1.18104 0.88153 0.90960 0.90952 0.92190 0.92125 0.77433 0.78772 0.82021 0.75576 0.85703 0.83338 0.84488 0.87259 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 10.29 71.98 0.74 -1.72 16 2 C 0.05 1.39 6.20 71.98 0.45 1.83 16 3 O -0.34 -10.97 10.04 -56.57 -0.57 -11.54 16 4 C 0.50 18.29 7.88 70.29 0.55 18.84 16 5 O -0.50 -21.87 13.53 19.85 0.27 -21.61 16 6 C 0.05 1.63 6.51 41.92 0.27 1.90 16 7 N -0.45 -11.04 10.12 -184.52 -1.87 -12.91 16 8 C 0.09 1.34 11.17 84.92 0.95 2.29 16 9 C -0.10 -1.16 10.10 22.41 0.23 -0.93 16 10 C -0.10 -1.86 10.11 22.59 0.23 -1.64 16 11 C 0.16 4.78 4.47 38.84 0.17 4.95 16 12 N -0.69 -26.12 4.03 -179.29 -0.72 -26.85 16 13 C 0.18 7.41 4.91 38.31 0.19 7.60 16 14 C -0.16 -5.76 9.25 22.38 0.21 -5.55 16 15 C -0.14 -4.56 10.04 22.28 0.22 -4.33 16 16 C -0.13 -4.83 10.04 22.28 0.22 -4.61 16 17 C -0.20 -9.61 9.16 22.37 0.21 -9.40 16 18 C 0.07 3.64 6.67 22.70 0.15 3.79 16 19 O -0.24 -13.65 7.84 -22.85 -0.18 -13.83 16 20 C -0.39 -23.53 9.94 67.91 0.68 -22.86 16 21 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 22 C 0.01 0.49 5.49 84.83 0.47 0.96 16 23 N -0.93 -57.13 13.96 21.61 0.30 -56.83 16 24 Si 0.97 47.09 28.62 68.60 1.96 49.05 16 25 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 28 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.21 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.20 0.39 8.06 -2.91 -0.02 0.37 16 35 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 36 H 0.41 16.54 8.20 -92.71 -0.76 15.78 16 37 H 0.13 3.94 6.87 -2.91 -0.02 3.92 16 38 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 40 H 0.11 5.61 5.63 -2.91 -0.02 5.59 16 41 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -79.57 357.13 5.45 -74.12 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.32 Total: 29.25 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 5.93 Total: -8.87 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -2.29 Total: -96.58 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -0.48 Total: -46.98 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.96 Total: 49.05 kcal Total: -79.57 5.45 -74.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212597114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.721 kcal (2) G-P(sol) polarization free energy of solvation -79.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds