Wall clock time and date at job start Tue Mar 31 2020 16:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47262 * 2 1 4 4 C 1.34752 * 117.00195 * 179.97438 * 3 2 1 5 5 O 1.21474 * 120.00043 * 359.97438 * 4 3 2 6 6 C 1.47697 * 120.00070 * 180.02562 * 4 3 2 7 7 C 1.36045 * 119.82035 * 180.29698 * 6 4 3 8 8 C 1.46640 * 118.54211 * 180.26213 * 7 6 4 9 9 N 1.32985 * 120.88594 * 179.71570 * 8 7 6 10 10 C 1.36059 * 120.00198 * 174.58832 * 9 8 7 11 11 C 1.39898 * 120.22315 * 94.84842 * 10 9 8 12 12 C 1.37829 * 119.88479 * 180.02562 * 11 10 9 13 13 C 1.38569 * 120.34294 * 0.02562 * 12 11 10 14 14 C 1.38190 * 120.44584 * 0.02562 * 13 12 11 15 15 C 1.38633 * 120.10893 * 359.97438 * 14 13 12 16 16 O 1.35631 * 120.16876 * 180.02562 * 15 14 13 17 17 C 1.34798 * 117.00311 * 354.38013 * 16 15 14 18 18 H 1.08001 * 119.99679 * 5.06399 * 17 16 15 19 19 C 1.38528 * 119.99918 * 185.06452 * 17 16 15 20 20 N 1.31631 * 119.99756 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00293 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47181 * 89.99849 * 21 19 17 23 23 H 1.48494 * 109.46849 * 210.00080 * 21 19 17 24 24 H 1.48500 * 109.46843 * 330.00004 * 21 19 17 25 25 C 1.42129 * 118.22648 * 359.44745 * 8 7 6 26 26 C 1.34801 * 119.43552 * 0.27324 * 25 8 7 27 27 N 1.35857 * 121.48078 * 359.97438 * 26 25 8 28 28 H 0.96996 * 119.01860 * 179.97438 * 27 26 25 29 29 H 1.08995 * 109.46768 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 300.00087 * 1 2 3 31 31 H 1.09001 * 109.46780 * 59.99719 * 1 2 3 32 32 H 1.09004 * 109.47279 * 240.00296 * 2 1 3 33 33 H 1.09003 * 109.47289 * 120.00194 * 2 1 3 34 34 H 1.08004 * 120.72668 * 359.97438 * 7 6 4 35 35 H 1.08004 * 120.05590 * 0.02856 * 11 10 9 36 36 H 1.08005 * 119.83142 * 180.28086 * 12 11 10 37 37 H 1.07995 * 119.77873 * 180.02562 * 13 12 11 38 38 H 1.08000 * 119.94964 * 180.02562 * 14 13 12 39 39 H 0.97004 * 119.99967 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.28138 * 180.29582 * 25 8 7 41 41 H 1.08001 * 119.26091 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0900 0.5822 0.0015 6 6 3.9145 2.9104 0.0011 7 6 5.2638 3.0844 -0.0044 8 6 5.7939 4.4516 0.0022 9 7 7.1048 4.6755 0.0028 10 6 7.5779 5.9468 -0.1021 11 6 7.8999 6.6755 1.0479 12 6 8.3781 7.9631 0.9335 13 6 8.5415 8.5408 -0.3154 14 6 8.2268 7.8341 -1.4604 15 6 7.7444 6.5377 -1.3670 16 8 7.4357 5.8428 -2.4901 17 6 7.5092 6.5072 -3.6606 18 1 7.8817 7.5207 -3.6837 19 6 7.1071 5.8901 -4.8338 20 7 7.1785 6.5391 -5.9768 21 14 6.4621 4.1374 -4.7937 22 1 4.9911 4.1557 -4.5914 23 1 6.7766 3.4648 -6.0797 24 1 7.1061 3.3984 -3.6782 25 6 4.8694 5.5311 0.0021 26 6 3.5468 5.2706 0.0016 27 7 3.0746 3.9967 0.0006 28 1 2.1157 3.8503 0.0007 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.9298 2.2342 -0.0089 35 1 7.7740 6.2299 2.0236 36 1 8.6307 8.5233 1.8217 37 1 8.9173 9.5502 -0.3944 38 1 8.3577 8.2920 -2.4297 39 1 6.8965 6.1072 -6.7983 40 1 5.2235 6.5514 0.0021 41 1 2.8467 6.0930 0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212598322.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:42 Heat of formation + Delta-G solvation = -44.440810 kcal Electronic energy + Delta-G solvation = -27090.252305 eV Core-core repulsion = 23129.231819 eV Total energy + Delta-G solvation = -3961.020486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.16586 -41.11467 -40.45820 -38.37932 -37.98999 -36.63377 -34.43676 -33.28269 -32.73283 -32.21389 -30.86132 -29.33014 -27.22280 -26.51720 -24.45180 -23.92076 -23.16598 -22.85677 -21.68007 -20.27450 -19.75792 -19.14644 -18.87325 -17.96199 -17.86345 -17.56015 -16.68221 -16.58270 -16.19489 -15.74122 -15.63836 -15.52285 -15.37374 -15.08426 -14.82399 -14.79283 -14.34262 -14.10584 -13.94605 -13.66118 -13.36634 -13.09483 -13.05652 -12.77730 -12.66809 -12.60325 -12.57171 -12.14783 -12.08613 -11.92134 -11.63671 -11.42943 -11.00955 -10.92788 -10.86523 -9.40024 -8.64436 -8.51787 -8.34819 -6.18952 -0.58799 0.31089 0.55899 0.71477 1.08453 1.19618 1.23863 1.28713 1.45618 1.83391 2.23905 2.48477 2.75385 3.08783 3.13724 3.26840 3.57334 3.81056 3.99559 4.01487 4.03219 4.17464 4.22796 4.29864 4.32498 4.45003 4.56757 4.70944 4.73065 4.76827 4.93341 4.97924 5.00189 5.04209 5.18702 5.30386 5.43948 5.52330 5.61106 5.73947 5.76985 5.80614 5.92745 6.18472 6.27711 6.32762 6.84754 7.28236 7.69250 8.60442 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.004084 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.680364 B = 6854.375505 C = 8543.315889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.346 6.346 4 C 0.523 3.477 5 O -0.506 6.506 6 C 0.123 3.877 7 C -0.114 4.114 8 C 0.244 3.756 9 N -0.573 5.573 10 C 0.055 3.945 11 C -0.110 4.110 12 C -0.157 4.157 13 C -0.098 4.098 14 C -0.223 4.223 15 C 0.093 3.907 16 O -0.238 6.238 17 C -0.389 4.389 18 H 0.082 0.918 19 C 0.019 3.981 20 N -0.922 5.922 21 Si 0.954 3.046 22 H -0.260 1.260 23 H -0.265 1.265 24 H -0.279 1.279 25 C -0.287 4.287 26 C 0.184 3.816 27 N -0.577 5.577 28 H 0.443 0.557 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.148 0.852 35 H 0.133 0.867 36 H 0.154 0.846 37 H 0.142 0.858 38 H 0.110 0.890 39 H 0.283 0.717 40 H 0.130 0.870 41 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.268 -7.465 16.589 26.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 O -0.262 6.262 4 C 0.365 3.635 5 O -0.393 6.393 6 C 0.014 3.986 7 C -0.142 4.142 8 C 0.076 3.924 9 N -0.287 5.287 10 C -0.046 4.046 11 C -0.130 4.130 12 C -0.175 4.175 13 C -0.117 4.117 14 C -0.243 4.243 15 C 0.043 3.957 16 O -0.146 6.146 17 C -0.466 4.466 18 H 0.100 0.900 19 C -0.180 4.180 20 N -0.564 5.564 21 Si 0.778 3.222 22 H -0.185 1.185 23 H -0.190 1.190 24 H -0.205 1.205 25 C -0.316 4.316 26 C 0.054 3.946 27 N -0.189 5.189 28 H 0.284 0.716 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.165 0.835 35 H 0.151 0.849 36 H 0.171 0.829 37 H 0.160 0.840 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.148 0.852 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -18.279 -8.486 16.378 25.969 hybrid contribution -0.055 -0.009 -0.872 0.874 sum -18.334 -8.495 15.506 25.470 Atomic orbital electron populations 1.21852 0.89729 1.04659 1.04111 1.23500 0.97342 0.77771 1.03316 1.86489 1.21079 1.35210 1.83452 1.20478 0.81881 0.87906 0.73188 1.90923 1.61262 1.41572 1.45570 1.18783 0.90085 0.85249 1.04533 1.21891 0.92798 0.96500 1.02975 1.20523 0.90063 0.92412 0.89401 1.68993 1.12521 1.19360 1.27858 1.18133 1.06161 0.90113 0.90160 1.21172 1.01599 0.94447 0.95807 1.21025 1.03697 0.95080 0.97731 1.21117 0.99206 1.00037 0.91339 1.21219 1.07709 0.95288 1.00048 1.19949 0.97718 0.91451 0.86590 1.83534 1.79840 1.38451 1.12767 1.20713 1.43573 0.99571 0.82716 0.90016 1.25008 0.96913 1.02697 0.93333 1.69749 1.48673 1.39250 0.98708 0.85448 0.79529 0.79568 0.77672 1.18461 1.18992 1.20482 1.21557 0.93775 0.99626 1.16596 1.22185 0.96122 0.86510 0.89831 1.41183 1.10947 1.02547 1.64201 0.71589 0.88125 0.90569 0.91127 0.91058 0.90321 0.83478 0.84885 0.82868 0.84013 0.87238 0.90711 0.85171 0.76073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 71.98 0.74 -0.10 16 2 C 0.05 0.63 6.20 71.98 0.45 1.08 16 3 O -0.35 -5.37 9.55 -56.63 -0.54 -5.91 16 4 C 0.52 11.73 7.94 70.32 0.56 12.29 16 5 O -0.51 -14.49 16.08 19.92 0.32 -14.17 16 6 C 0.12 2.95 6.78 40.28 0.27 3.22 16 7 C -0.11 -3.77 9.79 23.95 0.23 -3.53 16 8 C 0.24 9.40 6.80 42.13 0.29 9.68 16 9 N -0.57 -26.46 10.19 -177.01 -1.80 -28.26 16 10 C 0.06 2.54 4.17 39.47 0.16 2.70 16 11 C -0.11 -4.12 10.00 22.57 0.23 -3.89 16 12 C -0.16 -5.16 10.02 22.25 0.22 -4.94 16 13 C -0.10 -3.63 10.03 22.34 0.22 -3.41 16 14 C -0.22 -10.56 9.16 22.35 0.20 -10.36 16 15 C 0.09 4.88 6.70 22.94 0.15 5.03 16 16 O -0.24 -14.19 8.33 -21.11 -0.18 -14.37 16 17 C -0.39 -24.21 9.94 67.89 0.67 -23.53 16 18 H 0.08 5.26 5.44 -2.91 -0.02 5.25 16 19 C 0.02 1.13 5.49 84.79 0.47 1.59 16 20 N -0.92 -56.81 13.97 21.59 0.30 -56.51 16 21 Si 0.95 49.07 28.61 68.60 1.96 51.04 16 22 H -0.26 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.28 -15.40 7.11 99.48 0.71 -14.70 16 25 C -0.29 -8.93 9.26 22.45 0.21 -8.72 16 26 C 0.18 3.39 11.13 83.28 0.93 4.32 16 27 N -0.58 -9.41 5.30 -184.49 -0.98 -10.39 16 28 H 0.44 3.49 8.19 -92.71 -0.76 2.73 16 29 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.15 5.13 7.59 -2.91 -0.02 5.11 16 35 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 37 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 38 H 0.11 5.59 5.64 -2.91 -0.02 5.57 16 39 H 0.28 16.03 8.31 -92.71 -0.77 15.26 16 40 H 0.13 4.46 7.06 -2.91 -0.02 4.44 16 41 H 0.22 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -86.02 362.21 5.42 -80.59 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.33 Total: 16.53 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 6.01 Total: -18.55 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -2.48 Total: -95.16 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.40 Total: -34.45 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 1.96 Total: 51.04 kcal Total: -86.02 5.42 -80.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212598322.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.153 kcal (2) G-P(sol) polarization free energy of solvation -86.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds