Wall clock time and date at job start Tue Mar 31 2020 16:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45200 * 109.47282 * 2 1 4 4 C 1.34690 * 117.00137 * 180.02562 * 3 2 1 5 5 O 1.21430 * 119.99634 * 359.97438 * 4 3 2 6 6 C 1.48052 * 120.00055 * 179.97438 * 4 3 2 7 7 C 1.39189 * 119.68391 * 179.97438 * 6 4 3 8 8 C 1.38794 * 119.22572 * 180.02562 * 7 6 4 9 9 C 1.38292 * 118.58014 * 359.97438 * 8 7 6 10 10 C 1.39480 * 119.30202 * 359.97438 * 9 8 7 11 11 N 1.39035 * 119.63753 * 179.97438 * 10 9 8 12 12 C 1.39846 * 119.99832 * 355.28018 * 11 10 9 13 13 C 1.38763 * 120.10697 * 254.89124 * 12 11 10 14 14 C 1.38183 * 119.99366 * 180.27505 * 13 12 11 15 15 C 1.38356 * 120.20364 * 359.70706 * 14 13 12 16 16 C 1.38174 * 120.21143 * 359.97438 * 15 14 13 17 17 C 1.38724 * 120.00289 * 0.02562 * 16 15 14 18 18 O 1.35788 * 120.09861 * 179.97438 * 17 16 15 19 19 C 1.34798 * 117.00113 * 5.65386 * 18 17 16 20 20 H 1.08001 * 120.00297 * 354.93582 * 19 18 17 21 21 C 1.38634 * 119.99766 * 174.92979 * 19 18 17 22 22 N 1.31577 * 119.99818 * 179.72701 * 21 19 18 23 23 Si 1.86802 * 120.00064 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47171 * 269.72729 * 23 21 19 25 25 H 1.48500 * 109.46835 * 29.72724 * 23 21 19 26 26 H 1.48503 * 109.46848 * 149.72362 * 23 21 19 27 27 N 1.32085 * 120.72625 * 0.25933 * 10 9 8 28 28 H 1.08998 * 109.47342 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47260 * 300.00856 * 1 2 3 30 30 H 1.08999 * 109.46854 * 60.00614 * 1 2 3 31 31 H 1.08997 * 109.47545 * 239.99564 * 2 1 3 32 32 H 1.09004 * 109.47268 * 119.99562 * 2 1 3 33 33 H 1.07997 * 120.38400 * 0.04177 * 7 6 4 34 34 H 1.07997 * 120.70859 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.34456 * 180.02562 * 9 8 7 36 36 H 0.96992 * 120.00167 * 175.28002 * 11 10 9 37 37 H 1.08003 * 120.00372 * 359.97438 * 13 12 11 38 38 H 1.07994 * 119.90199 * 179.72372 * 14 13 12 39 39 H 1.08002 * 119.89380 * 180.02562 * 15 14 13 40 40 H 1.07995 * 119.99544 * 180.02562 * 16 15 14 41 41 H 0.96998 * 119.99969 * 180.27513 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3493 1.5454 -0.0005 5 8 4.0889 0.5824 -0.0005 6 6 3.9152 2.9135 -0.0011 7 6 5.2961 3.0882 -0.0012 8 6 5.8163 4.3750 -0.0012 9 6 4.9384 5.4435 -0.0017 10 6 3.5652 5.1988 -0.0028 11 7 2.6763 6.2679 -0.0028 12 6 3.1574 7.5772 0.0978 13 6 3.0296 8.2760 1.2899 14 6 3.5006 9.5715 1.3850 15 6 4.1058 10.1739 0.2963 16 6 4.2434 9.4836 -0.8927 17 6 3.7736 8.1825 -0.9979 18 8 3.9073 7.5025 -2.1656 19 6 4.6088 8.1039 -3.1471 20 1 4.9645 9.1151 -3.0150 21 6 4.8736 7.4244 -4.3261 22 7 5.5537 8.0133 -5.2863 23 14 4.2579 5.6756 -4.5548 24 1 5.2875 4.7211 -4.0711 25 1 3.0050 5.4868 -3.7803 26 1 3.9916 5.4290 -5.9948 27 7 3.1000 3.9626 0.0019 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9549 2.2326 -0.0014 34 1 6.8839 4.5383 -0.0008 35 1 5.3122 6.4568 -0.0022 36 1 1.7226 6.1057 -0.0727 37 1 2.5576 7.8090 2.1417 38 1 3.3964 10.1155 2.3121 39 1 4.4725 11.1866 0.3764 40 1 4.7166 9.9570 -1.7402 41 1 5.7356 7.5392 -6.1128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212598519.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:06 Heat of formation + Delta-G solvation = -34.063232 kcal Electronic energy + Delta-G solvation = -27366.343898 eV Core-core repulsion = 23405.773417 eV Total energy + Delta-G solvation = -3960.570480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.73140 -39.95955 -39.08258 -36.91375 -36.60797 -35.10655 -32.56206 -32.48422 -31.70213 -30.52787 -29.42758 -28.05298 -25.39481 -25.31373 -23.17658 -22.88202 -21.93480 -21.42404 -20.67095 -18.37737 -17.99092 -17.65705 -17.46041 -16.60650 -16.57790 -15.74577 -15.71073 -15.11152 -14.86718 -14.58905 -14.34642 -13.95929 -13.89184 -13.57261 -13.53073 -13.38811 -13.07693 -12.87756 -12.57392 -12.32533 -12.05924 -11.89542 -11.69199 -11.54578 -11.27810 -11.15486 -10.89453 -10.82625 -10.60311 -10.39651 -10.21894 -9.64498 -9.57764 -9.41888 -9.00026 -8.42985 -7.69726 -7.39380 -6.55283 -4.21735 0.76392 1.58351 1.79528 2.06046 2.53952 2.58344 3.14818 3.20804 3.36339 3.39515 4.09819 4.14192 4.25380 4.43331 4.62207 4.78284 4.83046 4.94667 4.96809 5.10371 5.17440 5.36597 5.37895 5.42254 5.48985 5.58423 5.62211 5.73011 5.81036 5.83408 6.01180 6.12476 6.22439 6.30532 6.38927 6.44883 6.67020 6.83419 6.88731 7.09638 7.26750 7.43393 7.58836 7.69458 7.84359 7.88570 8.36670 8.79804 9.39472 10.51429 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.004371 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.828545 B = 6404.948290 C = 7768.914090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.333 6.333 4 C 0.530 3.470 5 O -0.505 6.505 6 C 0.125 3.875 7 C -0.165 4.165 8 C -0.049 4.049 9 C -0.172 4.172 10 C 0.413 3.587 11 N -0.653 5.653 12 C 0.049 3.951 13 C -0.070 4.070 14 C -0.201 4.201 15 C -0.068 4.068 16 C -0.218 4.218 17 C 0.156 3.844 18 O -0.199 6.199 19 C -0.392 4.392 20 H 0.109 0.891 21 C 0.072 3.928 22 N -0.871 5.871 23 Si 0.894 3.106 24 H -0.271 1.271 25 H -0.258 1.258 26 H -0.280 1.280 27 N -0.504 5.504 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.408 0.592 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 -7.509 12.138 15.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.248 6.248 4 C 0.374 3.626 5 O -0.393 6.393 6 C -0.012 4.012 7 C -0.189 4.189 8 C -0.075 4.075 9 C -0.197 4.197 10 C 0.175 3.825 11 N -0.281 5.281 12 C -0.044 4.044 13 C -0.090 4.090 14 C -0.221 4.221 15 C -0.086 4.086 16 C -0.237 4.237 17 C 0.101 3.899 18 O -0.102 6.102 19 C -0.467 4.467 20 H 0.126 0.874 21 C -0.133 4.133 22 N -0.508 5.508 23 Si 0.719 3.281 24 H -0.196 1.196 25 H -0.182 1.182 26 H -0.206 1.206 27 N -0.224 5.224 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.245 0.755 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.155 0.845 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.432 -8.107 11.812 15.322 hybrid contribution 0.396 -0.576 -0.500 0.859 sum -5.036 -8.683 11.312 15.124 Atomic orbital electron populations 1.21786 0.92525 1.02722 1.03814 1.23074 0.95581 0.80409 1.02495 1.86714 1.23241 1.31599 1.83258 1.20898 0.80797 0.88660 0.72269 1.90815 1.60745 1.41463 1.46242 1.19449 0.89970 0.89209 1.02552 1.21691 0.94066 0.98735 1.04429 1.21327 1.00521 0.91097 0.94531 1.21855 0.92301 1.01422 1.04097 1.18272 0.88015 0.85928 0.90265 1.41230 1.07576 1.00622 1.78661 1.16542 1.10490 0.84873 0.92536 1.20863 0.98605 0.94630 0.94893 1.20566 1.06693 0.95686 0.99110 1.20919 0.96382 0.98764 0.92531 1.21243 1.07877 0.94934 0.99675 1.19436 0.94034 0.90757 0.85666 1.83645 1.64251 1.43564 1.18742 1.20776 1.32043 1.00704 0.93208 0.87382 1.24399 0.95274 0.99414 0.94178 1.69639 1.36981 1.38184 1.05995 0.86335 0.80886 0.83157 0.77717 1.19620 1.18157 1.20598 1.66947 1.39312 0.97545 1.18607 0.90347 0.91389 0.91309 0.91210 0.91236 0.83910 0.83865 0.83948 0.75472 0.86395 0.86884 0.86817 0.84478 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 37.16 0.38 -0.91 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.33 -5.09 10.04 -40.47 -0.41 -5.49 16 4 C 0.53 8.84 7.95 34.76 0.28 9.12 16 5 O -0.50 -8.68 16.10 -19.21 -0.31 -8.99 16 6 C 0.12 2.18 6.74 -83.04 -0.56 1.62 16 7 C -0.17 -2.62 9.63 -39.02 -0.38 -2.99 16 8 C -0.05 -0.77 10.16 -39.36 -0.40 -1.17 16 9 C -0.17 -3.07 8.94 -39.10 -0.35 -3.42 16 10 C 0.41 7.68 7.49 -155.13 -1.16 6.52 16 11 N -0.65 -11.58 5.18 -9.84 -0.05 -11.63 16 12 C 0.05 0.89 4.86 -83.53 -0.41 0.48 16 13 C -0.07 -1.07 9.96 -39.41 -0.39 -1.46 16 14 C -0.20 -2.91 10.04 -39.56 -0.40 -3.31 16 15 C -0.07 -1.06 10.04 -39.56 -0.40 -1.46 16 16 C -0.22 -4.18 9.16 -39.43 -0.36 -4.54 16 17 C 0.16 3.25 5.46 -38.92 -0.21 3.04 16 18 O -0.20 -4.85 7.99 0.02 0.00 -4.85 16 19 C -0.39 -10.38 9.95 30.88 0.31 -10.07 16 20 H 0.11 2.90 5.44 -52.49 -0.29 2.61 16 21 C 0.07 1.96 5.49 -17.51 -0.10 1.86 16 22 N -0.87 -24.33 13.96 55.48 0.77 -23.56 16 23 Si 0.89 21.84 28.62 -169.99 -4.86 16.98 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 27 N -0.50 -9.37 10.15 -8.99 -0.09 -9.46 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.14 1.98 7.63 -52.49 -0.40 1.58 16 34 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.14 2.61 6.27 -52.49 -0.33 2.29 16 36 H 0.41 6.64 8.95 -40.82 -0.37 6.28 16 37 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.14 2.79 5.64 -52.49 -0.30 2.49 16 41 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -30.14 360.88 -8.04 -38.18 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -4.62 Total: 9.18 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -3.91 Total: -5.80 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.63 Total: -44.65 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.72 Total: -19.33 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.86 Total: 16.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.14 -8.04 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212598519.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.118 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds