Wall clock time and date at job start Tue Mar 31 2020 16:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45200 * 109.47282 * 2 1 4 4 C 1.34690 * 117.00137 * 180.02562 * 3 2 1 5 5 O 1.21430 * 119.99634 * 359.97438 * 4 3 2 6 6 C 1.48052 * 120.00055 * 179.97438 * 4 3 2 7 7 C 1.39189 * 119.68391 * 179.97438 * 6 4 3 8 8 C 1.38794 * 119.22572 * 180.02562 * 7 6 4 9 9 C 1.38292 * 118.58014 * 359.97438 * 8 7 6 10 10 C 1.39480 * 119.30202 * 359.97438 * 9 8 7 11 11 N 1.39035 * 119.63753 * 179.97438 * 10 9 8 12 12 C 1.39846 * 119.99832 * 355.28018 * 11 10 9 13 13 C 1.38763 * 120.10697 * 254.89124 * 12 11 10 14 14 C 1.38183 * 119.99366 * 180.27505 * 13 12 11 15 15 C 1.38356 * 120.20364 * 359.70706 * 14 13 12 16 16 C 1.38174 * 120.21143 * 359.97438 * 15 14 13 17 17 C 1.38724 * 120.00289 * 0.02562 * 16 15 14 18 18 O 1.35788 * 120.09861 * 179.97438 * 17 16 15 19 19 C 1.34798 * 117.00113 * 5.65386 * 18 17 16 20 20 H 1.08001 * 120.00297 * 354.93582 * 19 18 17 21 21 C 1.38634 * 119.99766 * 174.92979 * 19 18 17 22 22 N 1.31577 * 119.99818 * 179.72701 * 21 19 18 23 23 Si 1.86802 * 120.00064 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47171 * 269.72729 * 23 21 19 25 25 H 1.48500 * 109.46835 * 29.72724 * 23 21 19 26 26 H 1.48503 * 109.46848 * 149.72362 * 23 21 19 27 27 N 1.32085 * 120.72625 * 0.25933 * 10 9 8 28 28 H 1.08998 * 109.47342 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47260 * 300.00856 * 1 2 3 30 30 H 1.08999 * 109.46854 * 60.00614 * 1 2 3 31 31 H 1.08997 * 109.47545 * 239.99564 * 2 1 3 32 32 H 1.09004 * 109.47268 * 119.99562 * 2 1 3 33 33 H 1.07997 * 120.38400 * 0.04177 * 7 6 4 34 34 H 1.07997 * 120.70859 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.34456 * 180.02562 * 9 8 7 36 36 H 0.96992 * 120.00167 * 175.28002 * 11 10 9 37 37 H 1.08003 * 120.00372 * 359.97438 * 13 12 11 38 38 H 1.07994 * 119.90199 * 179.72372 * 14 13 12 39 39 H 1.08002 * 119.89380 * 180.02562 * 15 14 13 40 40 H 1.07995 * 119.99544 * 180.02562 * 16 15 14 41 41 H 0.96998 * 119.99969 * 180.27513 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3493 1.5454 -0.0005 5 8 4.0889 0.5824 -0.0005 6 6 3.9152 2.9135 -0.0011 7 6 5.2961 3.0882 -0.0012 8 6 5.8163 4.3750 -0.0012 9 6 4.9384 5.4435 -0.0017 10 6 3.5652 5.1988 -0.0028 11 7 2.6763 6.2679 -0.0028 12 6 3.1574 7.5772 0.0978 13 6 3.0296 8.2760 1.2899 14 6 3.5006 9.5715 1.3850 15 6 4.1058 10.1739 0.2963 16 6 4.2434 9.4836 -0.8927 17 6 3.7736 8.1825 -0.9979 18 8 3.9073 7.5025 -2.1656 19 6 4.6088 8.1039 -3.1471 20 1 4.9645 9.1151 -3.0150 21 6 4.8736 7.4244 -4.3261 22 7 5.5537 8.0133 -5.2863 23 14 4.2579 5.6756 -4.5548 24 1 5.2875 4.7211 -4.0711 25 1 3.0050 5.4868 -3.7803 26 1 3.9916 5.4290 -5.9948 27 7 3.1000 3.9626 0.0019 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9549 2.2326 -0.0014 34 1 6.8839 4.5383 -0.0008 35 1 5.3122 6.4568 -0.0022 36 1 1.7226 6.1057 -0.0727 37 1 2.5576 7.8090 2.1417 38 1 3.3964 10.1155 2.3121 39 1 4.4725 11.1866 0.3764 40 1 4.7166 9.9570 -1.7402 41 1 5.7356 7.5392 -6.1128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212598519.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:04 Heat of formation + Delta-G solvation = -50.672402 kcal Electronic energy + Delta-G solvation = -27367.064125 eV Core-core repulsion = 23405.773417 eV Total energy + Delta-G solvation = -3961.290708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = -0.48 seconds Orbital eigenvalues (eV) -42.01713 -41.33241 -40.48759 -38.45384 -37.81531 -36.45780 -34.46740 -33.78595 -32.64848 -31.81706 -30.85629 -29.47394 -27.22739 -26.53949 -24.31410 -24.08452 -23.29432 -22.80081 -21.98851 -19.90239 -19.58282 -19.00662 -18.93478 -17.88950 -17.72295 -17.14438 -17.02220 -16.70043 -16.27159 -16.03445 -15.58319 -15.51430 -15.43700 -14.87279 -14.79768 -14.70777 -14.32587 -14.23206 -14.13001 -13.64904 -13.22516 -13.09412 -13.00659 -12.73092 -12.66275 -12.55121 -12.53988 -12.17383 -12.08090 -11.70572 -11.57760 -11.33619 -10.97645 -10.94130 -10.75293 -9.79008 -9.17444 -8.80834 -8.54911 -6.22939 -0.55312 0.26483 0.44301 0.65311 1.21054 1.23342 1.28222 1.40226 1.42041 2.06044 2.17976 2.73053 2.76858 3.00724 3.09453 3.22063 3.75861 3.88031 3.97616 4.02890 4.07798 4.12121 4.18318 4.28235 4.29445 4.39548 4.52536 4.63444 4.72833 4.82538 4.88922 4.91855 5.02371 5.03074 5.13661 5.30639 5.34883 5.40719 5.51693 5.67485 5.74366 5.84809 5.97693 6.21772 6.35881 6.56505 6.82250 7.01296 7.59153 8.56747 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.004371 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.828545 B = 6404.948290 C = 7768.914090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.345 6.345 4 C 0.531 3.469 5 O -0.515 6.515 6 C 0.106 3.894 7 C -0.161 4.161 8 C -0.042 4.042 9 C -0.189 4.189 10 C 0.398 3.602 11 N -0.656 5.656 12 C 0.057 3.943 13 C -0.066 4.066 14 C -0.170 4.170 15 C -0.065 4.065 16 C -0.232 4.232 17 C 0.125 3.875 18 O -0.230 6.230 19 C -0.387 4.387 20 H 0.091 0.909 21 C 0.028 3.972 22 N -0.915 5.915 23 Si 0.944 3.056 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.270 1.270 27 N -0.518 5.518 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.176 0.824 35 H 0.133 0.867 36 H 0.412 0.588 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.146 0.854 40 H 0.115 0.885 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 -7.928 15.116 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 O -0.260 6.260 4 C 0.375 3.625 5 O -0.404 6.404 6 C -0.030 4.030 7 C -0.184 4.184 8 C -0.067 4.067 9 C -0.214 4.214 10 C 0.160 3.840 11 N -0.285 5.285 12 C -0.037 4.037 13 C -0.085 4.085 14 C -0.189 4.189 15 C -0.083 4.083 16 C -0.252 4.252 17 C 0.073 3.927 18 O -0.136 6.136 19 C -0.463 4.463 20 H 0.109 0.891 21 C -0.172 4.172 22 N -0.556 5.556 23 Si 0.768 3.232 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.195 1.195 27 N -0.238 5.238 28 H 0.126 0.874 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.182 0.818 34 H 0.194 0.806 35 H 0.151 0.849 36 H 0.250 0.750 37 H 0.167 0.833 38 H 0.176 0.824 39 H 0.164 0.836 40 H 0.133 0.867 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.147 -8.523 14.839 18.183 hybrid contribution 0.510 -0.350 -1.037 1.207 sum -5.636 -8.873 13.802 17.349 Atomic orbital electron populations 1.21822 0.90403 1.04525 1.03490 1.23459 0.97251 0.78642 1.03120 1.86705 1.22413 1.34114 1.82782 1.20802 0.81307 0.88245 0.72127 1.90796 1.61057 1.41573 1.46959 1.19828 0.90862 0.89470 1.02835 1.21982 0.93777 0.99544 1.03125 1.21728 1.01942 0.90341 0.92734 1.21922 0.92516 1.01663 1.05323 1.18442 0.88485 0.86157 0.90896 1.41257 1.07782 1.00497 1.78935 1.16823 1.09282 0.85058 0.92559 1.21267 0.97879 0.94894 0.94509 1.21128 1.02831 0.94998 0.99941 1.21285 0.95704 1.00014 0.91302 1.21296 1.08357 0.94839 1.00711 1.19951 0.95520 0.91591 0.85630 1.83613 1.66100 1.44198 1.19728 1.20706 1.31626 1.00066 0.93942 0.89125 1.24894 0.96099 1.01831 0.94360 1.69697 1.39763 1.39395 1.06785 0.85599 0.79455 0.80417 0.77681 1.19554 1.19958 1.19489 1.66929 1.39906 0.97751 1.19252 0.87434 0.91330 0.91972 0.90974 0.90241 0.81818 0.80623 0.84919 0.74990 0.83310 0.82420 0.83623 0.86725 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.29 71.98 0.74 -1.49 16 2 C 0.05 1.02 6.19 71.98 0.45 1.47 16 3 O -0.34 -10.33 10.04 -55.99 -0.56 -10.89 16 4 C 0.53 17.37 7.95 70.43 0.56 17.93 16 5 O -0.51 -17.18 16.10 20.06 0.32 -16.86 16 6 C 0.11 3.65 6.74 41.82 0.28 3.93 16 7 C -0.16 -4.87 9.63 22.63 0.22 -4.65 16 8 C -0.04 -1.26 10.16 22.42 0.23 -1.03 16 9 C -0.19 -6.69 8.94 22.58 0.20 -6.48 16 10 C 0.40 14.70 7.49 133.23 1.00 15.70 16 11 N -0.66 -22.94 5.18 -185.04 -0.96 -23.90 16 12 C 0.06 1.96 4.86 38.30 0.19 2.15 16 13 C -0.07 -1.77 9.96 22.38 0.22 -1.54 16 14 C -0.17 -4.08 10.04 22.28 0.22 -3.86 16 15 C -0.07 -1.84 10.04 22.28 0.22 -1.62 16 16 C -0.23 -8.92 9.16 22.37 0.20 -8.71 16 17 C 0.12 5.24 5.46 22.70 0.12 5.36 16 18 O -0.23 -11.63 7.99 -22.84 -0.18 -11.82 16 19 C -0.39 -21.49 9.95 67.91 0.68 -20.82 16 20 H 0.09 5.19 5.44 -2.91 -0.02 5.17 16 21 C 0.03 1.56 5.49 84.83 0.47 2.03 16 22 N -0.92 -53.33 13.96 21.61 0.30 -53.03 16 23 Si 0.94 46.70 28.62 68.60 1.96 48.66 16 24 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 25 H -0.27 -14.14 7.11 99.48 0.71 -13.44 16 26 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 27 N -0.52 -19.16 10.15 -182.36 -1.85 -21.01 16 28 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.16 4.21 7.63 -2.91 -0.02 4.18 16 34 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.13 4.89 6.27 -2.91 -0.02 4.88 16 36 H 0.41 13.30 8.95 -92.71 -0.83 12.47 16 37 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.11 4.90 5.64 -2.91 -0.02 4.88 16 41 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -68.59 360.88 5.29 -63.30 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.26 Total: 27.17 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 6.00 Total: -1.63 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -2.51 Total: -97.94 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.42 Total: -39.57 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.96 Total: 48.66 kcal Total: -68.59 5.29 -63.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212598519.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.629 kcal (2) G-P(sol) polarization free energy of solvation -68.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.48 seconds