Wall clock time and date at job start Tue Mar 31 2020 16:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45197 * 109.47100 * 2 1 4 4 C 1.34682 * 117.00249 * 180.02562 * 3 2 1 5 5 O 1.21432 * 120.00012 * 359.97438 * 4 3 2 6 6 C 1.48047 * 120.00120 * 180.02562 * 4 3 2 7 7 C 1.39194 * 119.68504 * 180.02562 * 6 4 3 8 8 C 1.38787 * 119.22936 * 179.97438 * 7 6 4 9 9 C 1.38292 * 118.58175 * 359.97438 * 8 7 6 10 10 C 1.39482 * 119.30054 * 359.97438 * 9 8 7 11 11 N 1.39037 * 119.64068 * 180.02562 * 10 9 8 12 12 C 1.39846 * 120.00445 * 174.54633 * 11 10 9 13 13 C 1.38963 * 120.00410 * 327.06104 * 12 11 10 14 14 C 1.37995 * 119.99020 * 179.76275 * 13 12 11 15 15 C 1.38913 * 120.00996 * 0.48310 * 14 13 12 16 16 O 1.35783 * 119.99632 * 179.74686 * 15 14 13 17 17 C 1.34811 * 117.00060 * 185.54429 * 16 15 14 18 18 H 1.08000 * 119.99675 * 354.89035 * 17 16 15 19 19 C 1.38619 * 120.00009 * 174.88980 * 17 16 15 20 20 N 1.31579 * 120.00072 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99875 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46873 * 90.00140 * 21 19 17 23 23 H 1.48494 * 109.47399 * 210.00264 * 21 19 17 24 24 H 1.48496 * 109.47357 * 330.00594 * 21 19 17 25 25 C 1.38913 * 120.00768 * 359.77123 * 15 14 13 26 26 C 1.37995 * 120.00616 * 359.97438 * 25 15 14 27 27 N 1.32085 * 120.72384 * 0.02562 * 10 9 8 28 28 H 1.08994 * 109.46957 * 299.99534 * 1 2 3 29 29 H 1.09001 * 109.46970 * 59.99590 * 1 2 3 30 30 H 1.08997 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46814 * 240.00809 * 2 1 3 32 32 H 1.08992 * 109.47536 * 120.00269 * 2 1 3 33 33 H 1.08007 * 120.38739 * 359.94897 * 7 6 4 34 34 H 1.07995 * 120.71299 * 180.02562 * 8 7 6 35 35 H 1.08007 * 120.34923 * 179.97438 * 9 8 7 36 36 H 0.97002 * 119.99718 * 354.54655 * 11 10 9 37 37 H 1.08000 * 120.00234 * 359.97438 * 13 12 11 38 38 H 1.08004 * 119.99585 * 180.25244 * 14 13 12 39 39 H 0.96998 * 119.99997 * 179.97438 * 20 19 17 40 40 H 1.08000 * 119.99321 * 179.97438 * 25 15 14 41 41 H 1.07998 * 120.00296 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3492 1.5455 -0.0005 5 8 4.0890 0.5825 -0.0005 6 6 3.9151 2.9135 0.0000 7 6 5.2960 3.0884 -0.0011 8 6 5.8162 4.3750 -0.0011 9 6 4.9383 5.4436 -0.0006 10 6 3.5652 5.1989 -0.0006 11 7 2.6762 6.2680 -0.0006 12 6 1.3021 6.0349 -0.1157 13 6 0.8398 4.9649 -0.8723 14 6 -0.5160 4.7323 -0.9816 15 6 -1.4190 5.5734 -0.3438 16 8 -2.7531 5.3473 -0.4558 17 6 -3.5773 6.2639 0.0902 18 1 -3.1691 7.0859 0.6594 19 6 -4.9485 6.1512 -0.0789 20 7 -5.4457 5.1494 -0.7720 21 14 -6.0904 7.4208 0.6783 22 1 -6.3122 8.5262 -0.2884 23 1 -7.3903 6.7833 1.0081 24 1 -5.4764 7.9626 1.9171 25 6 -0.9572 6.6462 0.4082 26 6 0.3987 6.8762 0.5222 27 7 3.1000 3.9627 -0.0006 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 5.9550 2.2327 -0.0015 34 1 6.8837 4.5384 -0.0024 35 1 5.3121 6.4569 -0.0002 36 1 3.0092 7.1756 0.0792 37 1 1.5416 4.3135 -1.3718 38 1 -0.8753 3.8983 -1.5663 39 1 -6.4052 5.0703 -0.8901 40 1 -1.6594 7.3003 0.9037 41 1 0.7577 7.7105 1.1066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212605962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:10 Heat of formation + Delta-G solvation = -30.868190 kcal Electronic energy + Delta-G solvation = -26861.563487 eV Core-core repulsion = 22901.131554 eV Total energy + Delta-G solvation = -3960.431933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.93172 -39.91992 -38.89701 -37.13448 -36.57044 -34.63130 -32.83683 -32.20319 -31.55038 -30.52147 -29.98661 -27.51609 -25.51780 -25.21800 -23.21828 -22.91220 -22.08936 -21.13331 -20.85964 -18.56378 -17.98684 -17.54344 -17.00078 -16.61188 -16.58760 -16.14442 -15.94256 -15.14275 -14.78030 -14.49984 -14.28525 -13.91157 -13.80453 -13.51545 -13.49162 -13.17614 -12.73525 -12.72353 -12.50977 -12.29948 -12.04403 -11.85831 -11.58272 -11.54192 -11.47423 -11.10516 -10.88697 -10.64808 -10.50989 -10.46899 -10.41467 -9.98493 -9.49771 -9.29087 -8.87272 -8.25226 -8.13456 -6.69993 -6.41545 -3.98968 0.45468 1.20753 2.23462 2.29256 2.50921 2.52677 3.13331 3.14957 3.18514 3.19819 3.78797 3.99197 4.16151 4.61068 4.64522 4.81911 4.91365 4.95330 4.99774 5.10458 5.13802 5.22918 5.27981 5.38283 5.58836 5.62401 5.76064 5.82543 5.87689 5.96656 6.09290 6.12561 6.23484 6.33743 6.40667 6.56169 6.83128 6.88704 7.04321 7.23328 7.32347 7.40461 7.54349 7.67634 7.87631 8.03374 8.16804 9.04195 9.75912 10.76615 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.003268 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.000352 B = 8566.655726 C =10394.503996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.324 6.324 4 C 0.525 3.475 5 O -0.505 6.505 6 C 0.139 3.861 7 C -0.172 4.172 8 C -0.043 4.043 9 C -0.206 4.206 10 C 0.397 3.603 11 N -0.647 5.647 12 C 0.049 3.951 13 C -0.059 4.059 14 C -0.173 4.173 15 C 0.144 3.856 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.939 3.061 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.219 4.219 26 C -0.096 4.096 27 N -0.479 5.479 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.412 0.588 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.269 0.731 40 H 0.129 0.871 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.174 -1.949 1.663 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.239 6.239 4 C 0.368 3.632 5 O -0.393 6.393 6 C 0.001 3.999 7 C -0.196 4.196 8 C -0.068 4.068 9 C -0.231 4.231 10 C 0.160 3.840 11 N -0.271 5.271 12 C -0.044 4.044 13 C -0.079 4.079 14 C -0.193 4.193 15 C 0.091 3.909 16 O -0.082 6.082 17 C -0.466 4.466 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.764 3.236 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.239 4.239 26 C -0.117 4.117 27 N -0.199 5.199 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.249 0.751 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.147 0.853 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.912 -2.739 1.481 18.180 hybrid contribution 0.459 1.097 0.543 1.307 sum 18.370 -1.642 2.024 18.554 Atomic orbital electron populations 1.21812 0.91941 1.02806 1.04588 1.23125 0.96010 0.79818 1.02232 1.86773 1.22505 1.32057 1.82574 1.20860 0.81285 0.88467 0.72561 1.90821 1.60910 1.41406 1.46211 1.19725 0.89943 0.89839 1.00442 1.21723 0.94212 0.98786 1.04858 1.21242 1.00177 0.91153 0.94252 1.21614 0.91889 1.00940 1.08691 1.18326 0.87307 0.86901 0.91496 1.41824 1.03672 1.05627 1.76024 1.17209 0.81012 1.01418 1.04747 1.20553 0.94321 0.96345 0.96689 1.20078 0.91285 1.02279 1.05613 1.19399 0.85545 0.92806 0.93170 1.83987 1.10502 1.45172 1.68564 1.21291 0.87036 1.05957 1.32324 0.89188 1.25257 0.96446 0.97871 0.96971 1.70047 1.13274 1.29041 1.37509 0.85740 0.79255 0.79452 0.79138 1.19946 1.20314 1.19257 1.20933 0.94812 1.01847 1.06258 1.20421 0.92635 0.99579 0.99062 1.67426 1.38270 0.97507 1.16683 0.91029 0.90909 0.90317 0.91262 0.91328 0.83803 0.83941 0.84420 0.75117 0.85810 0.86354 0.92107 0.85304 0.87432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.29 37.16 0.38 -1.39 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.32 -5.02 10.03 -40.45 -0.41 -5.43 16 4 C 0.53 7.91 7.95 34.75 0.28 8.18 16 5 O -0.51 -7.84 16.10 -19.21 -0.31 -8.15 16 6 C 0.14 1.96 6.74 -83.05 -0.56 1.40 16 7 C -0.17 -1.89 9.63 -39.02 -0.38 -2.27 16 8 C -0.04 -0.37 10.16 -39.36 -0.40 -0.77 16 9 C -0.21 -1.97 9.94 -39.10 -0.39 -2.36 16 10 C 0.40 5.28 7.21 -155.12 -1.12 4.16 16 11 N -0.65 -8.64 5.48 -9.93 -0.05 -8.70 16 12 C 0.05 0.86 6.30 -83.67 -0.53 0.33 16 13 C -0.06 -1.12 8.57 -39.40 -0.34 -1.46 16 14 C -0.17 -3.74 9.98 -39.42 -0.39 -4.13 16 15 C 0.14 3.49 6.65 -39.08 -0.26 3.23 16 16 O -0.18 -5.08 9.75 0.00 0.00 -5.08 16 17 C -0.39 -10.82 9.48 30.87 0.29 -10.53 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -25.26 13.67 55.48 0.76 -24.50 16 21 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 25 C -0.22 -4.68 9.16 -39.42 -0.36 -5.04 16 26 C -0.10 -1.72 9.95 -39.40 -0.39 -2.12 16 27 N -0.48 -7.44 6.82 -8.99 -0.06 -7.50 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.14 1.40 7.63 -52.48 -0.40 1.00 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 36 H 0.41 4.07 8.81 -40.82 -0.36 3.71 16 37 H 0.12 2.29 6.23 -52.49 -0.33 1.96 16 38 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.13 2.75 5.63 -52.49 -0.30 2.45 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -33.19 361.19 -8.28 -41.47 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.59 Total: 7.86 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -4.03 Total: -10.82 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.64 Total: -40.70 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.72 Total: -18.66 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.19 -8.28 -41.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.598 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds