Wall clock time and date at job start Tue Mar 31 2020 16:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45197 * 109.47100 * 2 1 4 4 C 1.34682 * 117.00249 * 180.02562 * 3 2 1 5 5 O 1.21432 * 120.00012 * 359.97438 * 4 3 2 6 6 C 1.48047 * 120.00120 * 180.02562 * 4 3 2 7 7 C 1.39194 * 119.68504 * 180.02562 * 6 4 3 8 8 C 1.38787 * 119.22936 * 179.97438 * 7 6 4 9 9 C 1.38292 * 118.58175 * 359.97438 * 8 7 6 10 10 C 1.39482 * 119.30054 * 359.97438 * 9 8 7 11 11 N 1.39037 * 119.64068 * 180.02562 * 10 9 8 12 12 C 1.39846 * 120.00445 * 174.54633 * 11 10 9 13 13 C 1.38963 * 120.00410 * 327.06104 * 12 11 10 14 14 C 1.37995 * 119.99020 * 179.76275 * 13 12 11 15 15 C 1.38913 * 120.00996 * 0.48310 * 14 13 12 16 16 O 1.35783 * 119.99632 * 179.74686 * 15 14 13 17 17 C 1.34811 * 117.00060 * 185.54429 * 16 15 14 18 18 H 1.08000 * 119.99675 * 354.89035 * 17 16 15 19 19 C 1.38619 * 120.00009 * 174.88980 * 17 16 15 20 20 N 1.31579 * 120.00072 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99875 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46873 * 90.00140 * 21 19 17 23 23 H 1.48494 * 109.47399 * 210.00264 * 21 19 17 24 24 H 1.48496 * 109.47357 * 330.00594 * 21 19 17 25 25 C 1.38913 * 120.00768 * 359.77123 * 15 14 13 26 26 C 1.37995 * 120.00616 * 359.97438 * 25 15 14 27 27 N 1.32085 * 120.72384 * 0.02562 * 10 9 8 28 28 H 1.08994 * 109.46957 * 299.99534 * 1 2 3 29 29 H 1.09001 * 109.46970 * 59.99590 * 1 2 3 30 30 H 1.08997 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46814 * 240.00809 * 2 1 3 32 32 H 1.08992 * 109.47536 * 120.00269 * 2 1 3 33 33 H 1.08007 * 120.38739 * 359.94897 * 7 6 4 34 34 H 1.07995 * 120.71299 * 180.02562 * 8 7 6 35 35 H 1.08007 * 120.34923 * 179.97438 * 9 8 7 36 36 H 0.97002 * 119.99718 * 354.54655 * 11 10 9 37 37 H 1.08000 * 120.00234 * 359.97438 * 13 12 11 38 38 H 1.08004 * 119.99585 * 180.25244 * 14 13 12 39 39 H 0.96998 * 119.99997 * 179.97438 * 20 19 17 40 40 H 1.08000 * 119.99321 * 179.97438 * 25 15 14 41 41 H 1.07998 * 120.00296 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3492 1.5455 -0.0005 5 8 4.0890 0.5825 -0.0005 6 6 3.9151 2.9135 0.0000 7 6 5.2960 3.0884 -0.0011 8 6 5.8162 4.3750 -0.0011 9 6 4.9383 5.4436 -0.0006 10 6 3.5652 5.1989 -0.0006 11 7 2.6762 6.2680 -0.0006 12 6 1.3021 6.0349 -0.1157 13 6 0.8398 4.9649 -0.8723 14 6 -0.5160 4.7323 -0.9816 15 6 -1.4190 5.5734 -0.3438 16 8 -2.7531 5.3473 -0.4558 17 6 -3.5773 6.2639 0.0902 18 1 -3.1691 7.0859 0.6594 19 6 -4.9485 6.1512 -0.0789 20 7 -5.4457 5.1494 -0.7720 21 14 -6.0904 7.4208 0.6783 22 1 -6.3122 8.5262 -0.2884 23 1 -7.3903 6.7833 1.0081 24 1 -5.4764 7.9626 1.9171 25 6 -0.9572 6.6462 0.4082 26 6 0.3987 6.8762 0.5222 27 7 3.1000 3.9627 -0.0006 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 5.9550 2.2327 -0.0015 34 1 6.8837 4.5384 -0.0024 35 1 5.3121 6.4569 -0.0002 36 1 3.0092 7.1756 0.0792 37 1 1.5416 4.3135 -1.3718 38 1 -0.8753 3.8983 -1.5663 39 1 -6.4052 5.0703 -0.8901 40 1 -1.6594 7.3003 0.9037 41 1 0.7577 7.7105 1.1066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212605962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:08 Heat of formation + Delta-G solvation = -50.647642 kcal Electronic energy + Delta-G solvation = -26862.421188 eV Core-core repulsion = 22901.131554 eV Total energy + Delta-G solvation = -3961.289634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.97301 -41.10902 -40.46980 -38.65122 -37.74576 -35.98377 -34.16268 -33.72804 -32.58506 -31.91177 -31.34592 -28.99179 -27.23704 -26.42029 -24.27266 -24.11738 -23.47538 -22.35469 -22.26128 -19.92890 -19.47168 -19.02526 -18.33598 -18.01675 -17.69144 -17.19836 -16.87434 -16.33124 -16.18069 -16.08836 -15.74478 -15.43337 -15.17545 -14.86077 -14.64516 -14.48377 -14.20493 -13.99164 -13.65453 -13.60040 -13.26612 -13.20212 -12.99577 -12.97766 -12.73672 -12.55694 -12.37471 -12.11463 -11.99261 -11.74812 -11.56962 -11.15910 -10.86850 -10.72964 -10.48017 -9.74034 -9.57458 -8.42000 -8.18247 -6.07926 -0.49048 0.27199 0.61910 0.86700 1.35466 1.37437 1.47321 1.52088 1.54833 2.12965 2.21679 2.77776 2.94450 3.13868 3.23934 3.60002 3.81227 3.95011 3.96032 4.00443 4.08823 4.13450 4.20542 4.24805 4.28788 4.47878 4.57077 4.70040 4.73834 4.85398 4.87429 5.03080 5.06215 5.13289 5.18884 5.27995 5.34728 5.38352 5.52168 5.58555 5.71982 5.93257 6.07900 6.27295 6.41220 6.60867 7.02877 7.18576 7.86168 8.81809 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.003268 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.000352 B = 8566.655726 C =10394.503996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.348 6.348 4 C 0.521 3.479 5 O -0.519 6.519 6 C 0.102 3.898 7 C -0.155 4.155 8 C -0.033 4.033 9 C -0.176 4.176 10 C 0.371 3.629 11 N -0.643 5.643 12 C 0.086 3.914 13 C -0.062 4.062 14 C -0.182 4.182 15 C 0.102 3.898 16 O -0.234 6.234 17 C -0.410 4.410 18 H 0.103 0.897 19 C -0.025 4.025 20 N -0.923 5.923 21 Si 1.018 2.982 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.252 1.252 25 C -0.220 4.220 26 C -0.093 4.093 27 N -0.520 5.520 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.156 0.844 34 H 0.192 0.808 35 H 0.181 0.819 36 H 0.432 0.568 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.271 0.729 40 H 0.127 0.873 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.399 0.409 2.869 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.264 6.264 4 C 0.365 3.635 5 O -0.409 6.409 6 C -0.033 4.033 7 C -0.178 4.178 8 C -0.058 4.058 9 C -0.200 4.200 10 C 0.134 3.866 11 N -0.272 5.272 12 C -0.009 4.009 13 C -0.083 4.083 14 C -0.202 4.202 15 C 0.051 3.949 16 O -0.141 6.141 17 C -0.486 4.486 18 H 0.121 0.879 19 C -0.222 4.222 20 N -0.562 5.562 21 Si 0.837 3.163 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.175 1.175 25 C -0.240 4.240 26 C -0.113 4.113 27 N -0.240 5.240 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.174 0.826 34 H 0.209 0.791 35 H 0.199 0.801 36 H 0.273 0.727 37 H 0.148 0.852 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 22.256 -0.393 2.697 22.423 hybrid contribution -0.309 0.281 0.154 0.445 sum 21.947 -0.112 2.851 22.132 Atomic orbital electron populations 1.21822 0.91741 1.04230 1.02945 1.23313 0.96151 0.78942 1.03193 1.86769 1.23238 1.33722 1.82655 1.21240 0.80961 0.89237 0.72049 1.90788 1.60935 1.41951 1.47225 1.19778 0.91172 0.88903 1.03493 1.22068 0.92864 1.00738 1.02141 1.21816 1.02424 0.89419 0.92111 1.22083 0.89823 1.03390 1.04739 1.18697 0.88857 0.86083 0.92940 1.41661 1.01641 1.06994 1.76892 1.17278 0.83428 0.99019 1.01155 1.20641 0.93008 0.97447 0.97206 1.20177 0.92434 1.01900 1.05680 1.19826 0.84646 0.94957 0.95450 1.83951 1.12373 1.46769 1.71035 1.21823 0.87748 1.06416 1.32607 0.87948 1.26570 0.97959 1.00235 0.97458 1.70207 1.13664 1.31910 1.40427 0.84596 0.76514 0.76423 0.78740 1.18833 1.19867 1.17509 1.21057 0.96609 1.00783 1.05528 1.20751 0.90994 1.00760 0.98831 1.67182 1.40072 0.98806 1.17909 0.92623 0.92501 0.87369 0.90238 0.90328 0.82589 0.79114 0.80144 0.72671 0.85231 0.87600 0.92017 0.85579 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 10.29 71.98 0.74 -2.94 16 2 C 0.06 1.45 6.19 71.98 0.45 1.90 16 3 O -0.35 -11.28 10.03 -55.92 -0.56 -11.84 16 4 C 0.52 15.82 7.95 70.42 0.56 16.38 16 5 O -0.52 -16.06 16.10 20.06 0.32 -15.73 16 6 C 0.10 2.77 6.74 41.82 0.28 3.05 16 7 C -0.15 -2.87 9.63 22.63 0.22 -2.65 16 8 C -0.03 -0.37 10.16 22.41 0.23 -0.15 16 9 C -0.18 -2.34 9.94 22.58 0.22 -2.11 16 10 C 0.37 8.56 7.21 133.23 0.96 9.52 16 11 N -0.64 -14.75 5.48 -185.32 -1.02 -15.77 16 12 C 0.09 2.83 6.30 38.21 0.24 3.07 16 13 C -0.06 -2.41 8.57 22.39 0.19 -2.22 16 14 C -0.18 -8.39 9.98 22.37 0.22 -8.17 16 15 C 0.10 5.19 6.65 22.59 0.15 5.34 16 16 O -0.23 -14.37 9.75 -22.92 -0.22 -14.60 16 17 C -0.41 -24.02 9.48 67.91 0.64 -23.37 16 18 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 19 C -0.03 -1.45 5.49 84.82 0.47 -0.99 16 20 N -0.92 -57.42 13.67 21.61 0.30 -57.13 16 21 Si 1.02 43.06 29.55 68.60 2.03 45.09 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 25 C -0.22 -9.54 9.16 22.37 0.20 -9.33 16 26 C -0.09 -3.12 9.95 22.38 0.22 -2.90 16 27 N -0.52 -15.42 6.82 -182.36 -1.24 -16.67 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.16 2.51 7.63 -2.91 -0.02 2.48 16 34 H 0.19 0.45 8.06 -2.91 -0.02 0.43 16 35 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 36 H 0.43 6.30 8.81 -92.71 -0.82 5.48 16 37 H 0.13 4.87 6.23 -2.91 -0.02 4.85 16 38 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 39 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.13 5.45 5.63 -2.91 -0.02 5.43 16 41 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -80.64 361.19 5.88 -74.77 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.27 Total: 27.44 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 6.00 Total: -15.56 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -1.96 Total: -89.56 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.46 Total: -42.17 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -80.64 5.88 -74.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.118 kcal (2) G-P(sol) polarization free energy of solvation -80.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds