Wall clock time and date at job start Tue Mar 31 2020 16:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.46738 * 2 1 4 4 C 1.34738 * 117.00046 * 180.02562 * 3 2 1 5 5 O 1.21483 * 119.99639 * 359.97438 * 4 3 2 6 6 C 1.47700 * 120.00194 * 180.02562 * 4 3 2 7 7 C 1.39598 * 119.64058 * 179.72906 * 6 4 3 8 8 C 1.38197 * 119.15776 * 179.72822 * 7 6 4 9 9 C 1.39488 * 118.43070 * 0.52991 * 8 7 6 10 10 N 1.39035 * 120.40377 * 179.75142 * 9 8 7 11 11 C 1.39790 * 119.99803 * 326.17881 * 10 9 8 12 12 C 1.38976 * 120.00236 * 334.69504 * 11 10 9 13 13 C 1.38001 * 119.98840 * 179.74725 * 12 11 10 14 14 C 1.38908 * 120.00323 * 0.50948 * 13 12 11 15 15 O 1.35789 * 119.99177 * 179.74553 * 14 13 12 16 16 C 1.34809 * 117.00030 * 185.84335 * 15 14 13 17 17 H 1.07995 * 120.00717 * 354.91564 * 16 15 14 18 18 C 1.38627 * 119.99728 * 174.90866 * 16 15 14 19 19 N 1.31587 * 119.99798 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99999 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46800 * 60.00176 * 20 18 16 22 22 H 1.48494 * 109.47059 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47178 * 300.00564 * 20 18 16 24 24 C 1.38916 * 120.02089 * 359.76671 * 14 13 12 25 25 C 1.37992 * 120.00471 * 359.97438 * 24 14 13 26 26 C 1.39526 * 119.19785 * 359.72889 * 9 8 7 27 27 N 1.31284 * 120.77583 * 0.02562 * 26 9 8 28 28 H 1.08996 * 109.46827 * 299.99761 * 1 2 3 29 29 H 1.08999 * 109.47220 * 59.99911 * 1 2 3 30 30 H 1.09000 * 109.46740 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47148 * 240.00865 * 2 1 3 32 32 H 1.08999 * 109.47220 * 120.00089 * 2 1 3 33 33 H 1.08002 * 120.41775 * 359.97346 * 7 6 4 34 34 H 1.08006 * 120.78218 * 180.23542 * 8 7 6 35 35 H 0.97004 * 120.00324 * 146.16651 * 10 9 8 36 36 H 1.07996 * 120.00438 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.99193 * 180.27869 * 13 12 11 38 38 H 0.96995 * 119.99451 * 179.97438 * 19 18 16 39 39 H 1.08001 * 119.99741 * 179.97438 * 24 14 13 40 40 H 1.07994 * 120.00341 * 179.97438 * 25 24 14 41 41 H 1.07999 * 119.61106 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3497 1.5456 -0.0005 5 8 4.0897 0.5822 -0.0005 6 6 3.9141 2.9105 0.0000 7 6 5.2992 3.0848 0.0052 8 6 5.8166 4.3662 -0.0001 9 6 4.9278 5.4413 0.0009 10 7 5.4037 6.7477 0.0009 11 6 6.5884 7.0599 0.6740 12 6 7.0110 6.2729 1.7386 13 6 8.1833 6.5783 2.3995 14 6 8.9354 7.6785 2.0075 15 8 10.0862 7.9818 2.6613 16 6 10.7045 9.1278 2.3123 17 1 10.3274 9.7158 1.4887 18 6 11.8246 9.5514 3.0107 19 7 12.2843 8.8348 4.0139 20 14 12.6810 11.1397 2.5276 21 1 11.7298 12.2730 2.6534 22 1 13.8439 11.3670 3.4227 23 1 13.1505 11.0412 1.1221 24 6 8.5102 8.4688 0.9471 25 6 7.3408 8.1608 0.2824 26 6 3.5554 5.1898 0.0014 27 7 3.0980 3.9592 0.0014 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 5.9580 2.2290 0.0092 34 1 6.8840 4.5314 -0.0001 35 1 4.9137 7.4424 -0.4662 36 1 6.4244 5.4197 2.0457 37 1 8.5141 5.9641 3.2239 38 1 13.0682 9.1311 4.5023 39 1 9.0950 9.3243 0.6429 40 1 7.0102 8.7754 -0.5418 41 1 2.8613 6.0172 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212606118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:18 Heat of formation + Delta-G solvation = -41.514360 kcal Electronic energy + Delta-G solvation = -25691.769355 eV Core-core repulsion = 21730.875770 eV Total energy + Delta-G solvation = -3960.893585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.98595 -40.05866 -39.10630 -37.42953 -36.71167 -34.99024 -32.43268 -32.30447 -31.99350 -30.72529 -30.12839 -27.78400 -25.58211 -24.66727 -23.93431 -23.08109 -22.09949 -21.55492 -20.89412 -18.52885 -18.16102 -17.60336 -17.44344 -17.11500 -16.73614 -16.44826 -15.80864 -14.85533 -14.71175 -14.62286 -14.47917 -14.06618 -13.84295 -13.73343 -13.54444 -13.36913 -13.04234 -12.95788 -12.76711 -12.64468 -12.29570 -12.12118 -11.83874 -11.76741 -11.62112 -11.17776 -10.89081 -10.86780 -10.73231 -10.63699 -10.54233 -9.90050 -9.70177 -9.47892 -9.00798 -8.45083 -8.38684 -6.81245 -6.53603 -4.11308 0.43006 1.11711 1.95895 2.07344 2.42466 2.43060 3.07377 3.08201 3.11617 3.24305 3.69899 3.88990 4.08589 4.39070 4.57988 4.65807 4.67684 4.72036 4.84800 4.96726 4.99012 4.99592 5.14833 5.34595 5.36970 5.45534 5.49243 5.53391 5.66803 5.78166 5.91766 5.95971 5.99049 6.14573 6.23190 6.36315 6.59866 6.67033 6.83198 7.07800 7.13915 7.32448 7.42396 7.54909 7.72332 7.81507 7.89688 8.91226 9.59446 10.63778 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.034437 B = 0.001942 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.881886 B =14413.439571 C =14940.484066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.337 6.337 4 C 0.532 3.468 5 O -0.510 6.510 6 C 0.021 3.979 7 C -0.060 4.060 8 C -0.144 4.144 9 C 0.190 3.810 10 N -0.663 5.663 11 C 0.056 3.944 12 C -0.107 4.107 13 C -0.163 4.163 14 C 0.138 3.862 15 O -0.174 6.174 16 C -0.393 4.393 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.207 4.207 25 C -0.099 4.099 26 C 0.040 3.960 27 N -0.401 5.401 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.409 0.591 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.272 0.728 39 H 0.133 0.867 40 H 0.112 0.888 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.266 -9.075 -9.071 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.252 6.252 4 C 0.376 3.624 5 O -0.398 6.398 6 C -0.116 4.116 7 C -0.081 4.081 8 C -0.173 4.173 9 C 0.083 3.917 10 N -0.284 5.284 11 C -0.038 4.038 12 C -0.128 4.128 13 C -0.183 4.183 14 C 0.084 3.916 15 O -0.077 6.077 16 C -0.469 4.469 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.227 4.227 25 C -0.120 4.120 26 C -0.127 4.127 27 N -0.112 5.112 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.245 0.755 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.082 0.918 39 H 0.150 0.850 40 H 0.130 0.870 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.512 -9.705 -8.629 22.613 hybrid contribution 1.175 1.172 -0.456 1.721 sum -17.337 -8.533 -9.084 21.352 Atomic orbital electron populations 1.21790 0.92541 1.02805 1.03711 1.23065 0.95505 0.80354 1.02563 1.86688 1.23327 1.31671 1.83560 1.20683 0.80755 0.88601 0.72347 1.90846 1.60655 1.41618 1.46718 1.19625 0.90232 0.90146 1.11556 1.21863 0.94186 0.98235 0.93797 1.21509 1.01282 0.90718 1.03745 1.19129 0.93630 0.86142 0.92786 1.41773 1.25036 1.05973 1.55637 1.17258 0.89656 1.00074 0.96767 1.20445 0.97121 1.00284 0.94902 1.20067 0.95692 0.99326 1.03226 1.19364 0.87242 0.93452 0.91581 1.83987 1.29393 1.39261 1.55094 1.21267 1.10308 0.98423 1.16928 0.89073 1.25302 0.96457 0.99345 0.95383 1.70036 1.23000 1.37637 1.18695 0.85773 0.78816 0.80134 0.78682 1.19465 1.20219 1.19468 1.21016 0.98585 1.03600 0.99538 1.20401 0.94605 0.97288 0.99720 1.22570 0.91757 0.94127 1.04232 1.67426 1.38850 0.98502 1.06390 0.91364 0.91421 0.90308 0.91246 0.91191 0.83377 0.83170 0.75488 0.86665 0.85941 0.91841 0.84988 0.86983 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.57 16 2 C 0.06 0.53 6.20 37.16 0.23 0.76 16 3 O -0.34 -4.14 10.03 -40.60 -0.41 -4.55 16 4 C 0.53 7.20 7.94 34.60 0.27 7.47 16 5 O -0.51 -7.58 16.10 -19.25 -0.31 -7.89 16 6 C 0.02 0.28 6.74 -83.04 -0.56 -0.28 16 7 C -0.06 -0.73 9.62 -39.09 -0.38 -1.10 16 8 C -0.14 -1.74 7.88 -39.13 -0.31 -2.05 16 9 C 0.19 2.21 5.87 -83.65 -0.49 1.72 16 10 N -0.66 -7.62 5.44 -8.25 -0.04 -7.66 16 11 C 0.06 0.84 6.07 -83.68 -0.51 0.33 16 12 C -0.11 -1.74 7.97 -39.39 -0.31 -2.06 16 13 C -0.16 -3.17 9.98 -39.42 -0.39 -3.57 16 14 C 0.14 3.08 6.65 -39.08 -0.26 2.82 16 15 O -0.17 -4.71 9.75 -0.01 0.00 -4.72 16 16 C -0.39 -10.45 9.48 30.88 0.29 -10.15 16 17 H 0.09 2.21 5.20 -52.49 -0.27 1.93 16 18 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 19 N -0.86 -24.39 13.67 55.48 0.76 -23.63 16 20 Si 0.94 19.68 29.55 -169.99 -5.02 14.66 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 C -0.21 -4.06 9.16 -39.42 -0.36 -4.42 16 25 C -0.10 -1.58 9.93 -39.40 -0.39 -1.97 16 26 C 0.04 0.45 11.12 -17.31 -0.19 0.25 16 27 N -0.40 -5.19 10.10 -9.64 -0.10 -5.29 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.15 1.64 7.63 -52.49 -0.40 1.24 16 34 H 0.15 1.87 6.83 -52.48 -0.36 1.51 16 35 H 0.41 3.61 8.90 -40.82 -0.36 3.25 16 36 H 0.12 1.71 6.39 -52.49 -0.34 1.37 16 37 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.13 2.59 5.63 -52.49 -0.30 2.29 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -31.11 360.13 -7.31 -38.42 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.54 Total: 7.07 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.07 Total: -11.85 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.62 Total: -36.58 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.72 Total: -17.15 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.11 -7.31 -38.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.091 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds