Wall clock time and date at job start Tue Mar 31 2020 16:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.46738 * 2 1 4 4 C 1.34738 * 117.00046 * 180.02562 * 3 2 1 5 5 O 1.21483 * 119.99639 * 359.97438 * 4 3 2 6 6 C 1.47700 * 120.00194 * 180.02562 * 4 3 2 7 7 C 1.39598 * 119.64058 * 179.72906 * 6 4 3 8 8 C 1.38197 * 119.15776 * 179.72822 * 7 6 4 9 9 C 1.39488 * 118.43070 * 0.52991 * 8 7 6 10 10 N 1.39035 * 120.40377 * 179.75142 * 9 8 7 11 11 C 1.39790 * 119.99803 * 326.17881 * 10 9 8 12 12 C 1.38976 * 120.00236 * 334.69504 * 11 10 9 13 13 C 1.38001 * 119.98840 * 179.74725 * 12 11 10 14 14 C 1.38908 * 120.00323 * 0.50948 * 13 12 11 15 15 O 1.35789 * 119.99177 * 179.74553 * 14 13 12 16 16 C 1.34809 * 117.00030 * 185.84335 * 15 14 13 17 17 H 1.07995 * 120.00717 * 354.91564 * 16 15 14 18 18 C 1.38627 * 119.99728 * 174.90866 * 16 15 14 19 19 N 1.31587 * 119.99798 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99999 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46800 * 60.00176 * 20 18 16 22 22 H 1.48494 * 109.47059 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47178 * 300.00564 * 20 18 16 24 24 C 1.38916 * 120.02089 * 359.76671 * 14 13 12 25 25 C 1.37992 * 120.00471 * 359.97438 * 24 14 13 26 26 C 1.39526 * 119.19785 * 359.72889 * 9 8 7 27 27 N 1.31284 * 120.77583 * 0.02562 * 26 9 8 28 28 H 1.08996 * 109.46827 * 299.99761 * 1 2 3 29 29 H 1.08999 * 109.47220 * 59.99911 * 1 2 3 30 30 H 1.09000 * 109.46740 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47148 * 240.00865 * 2 1 3 32 32 H 1.08999 * 109.47220 * 120.00089 * 2 1 3 33 33 H 1.08002 * 120.41775 * 359.97346 * 7 6 4 34 34 H 1.08006 * 120.78218 * 180.23542 * 8 7 6 35 35 H 0.97004 * 120.00324 * 146.16651 * 10 9 8 36 36 H 1.07996 * 120.00438 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.99193 * 180.27869 * 13 12 11 38 38 H 0.96995 * 119.99451 * 179.97438 * 19 18 16 39 39 H 1.08001 * 119.99741 * 179.97438 * 24 14 13 40 40 H 1.07994 * 120.00341 * 179.97438 * 25 24 14 41 41 H 1.07999 * 119.61106 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3497 1.5456 -0.0005 5 8 4.0897 0.5822 -0.0005 6 6 3.9141 2.9105 0.0000 7 6 5.2992 3.0848 0.0052 8 6 5.8166 4.3662 -0.0001 9 6 4.9278 5.4413 0.0009 10 7 5.4037 6.7477 0.0009 11 6 6.5884 7.0599 0.6740 12 6 7.0110 6.2729 1.7386 13 6 8.1833 6.5783 2.3995 14 6 8.9354 7.6785 2.0075 15 8 10.0862 7.9818 2.6613 16 6 10.7045 9.1278 2.3123 17 1 10.3274 9.7158 1.4887 18 6 11.8246 9.5514 3.0107 19 7 12.2843 8.8348 4.0139 20 14 12.6810 11.1397 2.5276 21 1 11.7298 12.2730 2.6534 22 1 13.8439 11.3670 3.4227 23 1 13.1505 11.0412 1.1221 24 6 8.5102 8.4688 0.9471 25 6 7.3408 8.1608 0.2824 26 6 3.5554 5.1898 0.0014 27 7 3.0980 3.9592 0.0014 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 5.9580 2.2290 0.0092 34 1 6.8840 4.5314 -0.0001 35 1 4.9137 7.4424 -0.4662 36 1 6.4244 5.4197 2.0457 37 1 8.5141 5.9641 3.2239 38 1 13.0682 9.1311 4.5023 39 1 9.0950 9.3243 0.6429 40 1 7.0102 8.7754 -0.5418 41 1 2.8613 6.0172 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212606118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:15 Heat of formation + Delta-G solvation = -60.330145 kcal Electronic energy + Delta-G solvation = -25692.585269 eV Core-core repulsion = 21730.875770 eV Total energy + Delta-G solvation = -3961.709499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99831 -41.17982 -40.51063 -38.85227 -37.70561 -36.30278 -34.19712 -33.36460 -32.72757 -32.02252 -31.35245 -29.13813 -27.31068 -25.76424 -24.95377 -23.94375 -23.44639 -22.75146 -22.08096 -19.93436 -19.43905 -19.03033 -18.51376 -18.22239 -17.81943 -17.64085 -16.86929 -16.32335 -16.04216 -15.77581 -15.65384 -15.47202 -15.23810 -14.80735 -14.60516 -14.49834 -14.39360 -14.12978 -13.73040 -13.64566 -13.52133 -13.40170 -13.13052 -12.92916 -12.73233 -12.49600 -12.42753 -12.14903 -11.96852 -11.86001 -11.52582 -11.20367 -10.91411 -10.76483 -10.64237 -9.87851 -9.70187 -8.43755 -8.17353 -6.09428 -0.59336 0.16711 0.49982 0.70307 1.33576 1.37941 1.48387 1.53654 1.54187 2.16994 2.21293 2.69619 2.85627 3.16789 3.17050 3.54708 3.69358 3.74133 3.89049 3.97272 4.01997 4.04757 4.07145 4.09085 4.34745 4.46860 4.53294 4.64707 4.73294 4.79076 4.88842 4.93923 4.99451 5.06584 5.12778 5.16448 5.25290 5.38031 5.40620 5.46117 5.67339 5.84242 6.04553 6.29639 6.47026 6.67043 6.83800 7.01286 7.82802 8.79306 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.034437 B = 0.001942 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.881886 B =14413.439571 C =14940.484066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.344 6.344 4 C 0.530 3.470 5 O -0.531 6.531 6 C 0.012 3.988 7 C -0.060 4.060 8 C -0.146 4.146 9 C 0.187 3.813 10 N -0.651 5.651 11 C 0.096 3.904 12 C -0.105 4.105 13 C -0.170 4.170 14 C 0.094 3.906 15 O -0.233 6.233 16 C -0.410 4.410 17 H 0.105 0.895 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.017 2.983 21 H -0.257 1.257 22 H -0.276 1.276 23 H -0.257 1.257 24 C -0.209 4.209 25 C -0.095 4.095 26 C 0.057 3.943 27 N -0.416 5.416 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.428 0.572 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.271 0.729 39 H 0.127 0.873 40 H 0.154 0.846 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.441 -8.474 -11.389 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 O -0.260 6.260 4 C 0.375 3.625 5 O -0.421 6.421 6 C -0.124 4.124 7 C -0.081 4.081 8 C -0.175 4.175 9 C 0.082 3.918 10 N -0.275 5.275 11 C 0.000 4.000 12 C -0.126 4.126 13 C -0.190 4.190 14 C 0.044 3.956 15 O -0.140 6.140 16 C -0.486 4.486 17 H 0.123 0.877 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.836 3.164 21 H -0.181 1.181 22 H -0.201 1.201 23 H -0.181 1.181 24 C -0.228 4.228 25 C -0.116 4.116 26 C -0.110 4.110 27 N -0.127 5.127 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.171 0.829 34 H 0.165 0.835 35 H 0.268 0.732 36 H 0.152 0.848 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.145 0.855 40 H 0.171 0.829 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -21.800 -9.138 -11.008 26.076 hybrid contribution 1.687 0.703 0.080 1.830 sum -20.113 -8.435 -10.927 24.395 Atomic orbital electron populations 1.21814 0.90331 1.04402 1.03654 1.23392 0.97232 0.78934 1.02803 1.86680 1.22558 1.33666 1.83099 1.20829 0.81130 0.88638 0.71907 1.90829 1.61156 1.42280 1.47824 1.19743 0.90639 0.90297 1.11720 1.21918 0.94020 0.98591 0.93560 1.21548 1.01288 0.91016 1.03676 1.19162 0.93928 0.85790 0.92960 1.41597 1.23840 1.06636 1.55418 1.17303 0.89593 0.98131 0.94931 1.20588 0.96022 1.01074 0.94904 1.20211 0.96606 0.98665 1.03551 1.19873 0.87344 0.95313 0.93093 1.83952 1.32016 1.40361 1.57699 1.21778 1.10661 0.98836 1.17341 0.87739 1.26562 0.97191 1.03150 0.95302 1.70195 1.24330 1.40359 1.21140 0.84667 0.77532 0.75482 0.78690 1.18095 1.20091 1.18121 1.21128 0.99822 1.02966 0.98925 1.20702 0.92992 0.97832 1.00055 1.23068 0.91909 0.94299 1.01735 1.67485 1.39028 0.99024 1.07149 0.91487 0.91342 0.87882 0.90928 0.91109 0.82882 0.83498 0.73177 0.84777 0.86728 0.92007 0.85500 0.82867 0.78699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.29 71.98 0.74 -0.78 16 2 C 0.05 0.82 6.20 71.98 0.45 1.27 16 3 O -0.34 -8.04 10.03 -56.48 -0.57 -8.60 16 4 C 0.53 13.79 7.94 70.32 0.56 14.34 16 5 O -0.53 -15.47 16.10 19.89 0.32 -15.14 16 6 C 0.01 0.28 6.74 41.81 0.28 0.57 16 7 C -0.06 -1.34 9.62 22.59 0.22 -1.13 16 8 C -0.15 -3.15 7.88 22.56 0.18 -2.97 16 9 C 0.19 3.59 5.87 38.61 0.23 3.82 16 10 N -0.65 -11.77 5.44 -180.02 -0.98 -12.75 16 11 C 0.10 2.52 6.07 38.23 0.23 2.75 16 12 C -0.11 -3.22 7.97 22.39 0.18 -3.04 16 13 C -0.17 -6.74 9.98 22.37 0.22 -6.52 16 14 C 0.09 4.35 6.65 22.59 0.15 4.50 16 15 O -0.23 -13.46 9.75 -22.95 -0.22 -13.68 16 16 C -0.41 -22.84 9.48 67.91 0.64 -22.20 16 17 H 0.11 5.22 5.20 -2.91 -0.02 5.20 16 18 C -0.02 -1.37 5.49 84.82 0.47 -0.90 16 19 N -0.92 -55.60 13.67 21.61 0.30 -55.30 16 20 Si 1.02 41.44 29.55 68.60 2.03 43.47 16 21 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 24 C -0.21 -8.04 9.16 22.37 0.20 -7.84 16 25 C -0.10 -2.70 9.93 22.39 0.22 -2.48 16 26 C 0.06 1.02 11.12 85.09 0.95 1.96 16 27 N -0.42 -9.54 10.10 -184.41 -1.86 -11.40 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.15 3.23 7.63 -2.91 -0.02 3.21 16 34 H 0.15 3.30 6.83 -2.91 -0.02 3.28 16 35 H 0.43 5.02 8.90 -92.71 -0.82 4.19 16 36 H 0.13 3.62 6.39 -2.91 -0.02 3.60 16 37 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.13 4.96 5.63 -2.91 -0.02 4.95 16 40 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 41 H 0.20 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -72.88 360.13 5.19 -67.69 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.27 Total: 24.37 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 5.92 Total: -18.64 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -2.55 Total: -79.45 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.47 Total: -37.43 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -72.88 5.19 -67.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.356 kcal (2) G-P(sol) polarization free energy of solvation -72.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds