Wall clock time and date at job start Tue Mar 31 2020 16:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47308 * 2 1 4 4 C 1.34754 * 117.00056 * 179.97438 * 3 2 1 5 5 O 1.21493 * 120.00109 * 359.97438 * 4 3 2 6 6 C 1.47588 * 120.00057 * 180.02562 * 4 3 2 7 7 N 1.32931 * 119.81124 * 357.68789 * 6 4 3 8 8 C 1.31318 * 121.71399 * 179.97438 * 7 6 4 9 9 C 1.38873 * 121.13696 * 0.02562 * 8 7 6 10 10 C 1.38182 * 119.48352 * 359.97438 * 9 8 7 11 11 C 1.39627 * 118.42507 * 359.74685 * 10 9 8 12 12 N 1.38834 * 120.56679 * 180.24265 * 11 10 9 13 13 C 1.39795 * 119.99758 * 260.92083 * 12 11 10 14 14 C 1.38970 * 120.01243 * 6.17348 * 13 12 11 15 15 C 1.37994 * 119.99439 * 179.76665 * 14 13 12 16 16 C 1.38910 * 120.00671 * 0.48405 * 15 14 13 17 17 O 1.35784 * 119.99546 * 179.74548 * 16 15 14 18 18 C 1.34809 * 117.00085 * 174.66854 * 17 16 15 19 19 H 1.08005 * 120.00129 * 5.13269 * 18 17 16 20 20 C 1.38618 * 120.00072 * 185.13471 * 18 17 16 21 21 N 1.31587 * 120.00011 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00101 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47433 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47172 * 119.99822 * 22 20 18 25 25 H 1.48500 * 109.46761 * 239.99581 * 22 20 18 26 26 C 1.38916 * 120.01394 * 359.77412 * 16 15 14 27 27 C 1.37996 * 120.00626 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.47100 * 300.00350 * 1 2 3 29 29 H 1.09005 * 109.46611 * 59.99897 * 1 2 3 30 30 H 1.08994 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47488 * 240.00012 * 2 1 3 32 32 H 1.09003 * 109.47078 * 119.99885 * 2 1 3 33 33 H 1.07998 * 119.43398 * 179.97438 * 8 7 6 34 34 H 1.07993 * 120.25531 * 179.97438 * 9 8 7 35 35 H 1.08003 * 120.78273 * 180.02562 * 10 9 8 36 36 H 0.96999 * 119.99788 * 80.92620 * 12 11 10 37 37 H 1.08002 * 119.99936 * 359.97438 * 14 13 12 38 38 H 1.07999 * 119.99547 * 180.23746 * 15 14 13 39 39 H 0.97000 * 120.00292 * 180.02562 * 21 20 18 40 40 H 1.08001 * 120.00124 * 179.97438 * 26 16 15 41 41 H 1.08004 * 120.00166 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5454 0.0005 5 8 4.0900 0.5819 0.0015 6 6 3.9141 2.9092 0.0011 7 7 3.1018 3.9605 -0.0454 8 6 3.5632 5.1899 -0.0461 9 6 4.9275 5.4449 0.0015 10 6 5.8157 4.3875 0.0509 11 6 5.3032 3.0887 0.0567 12 7 6.1551 1.9938 0.1107 13 6 6.4789 1.3018 -1.0600 14 6 6.0539 1.7835 -2.2923 15 6 6.3779 1.1028 -3.4481 16 6 7.1203 -0.0693 -3.3791 17 8 7.4345 -0.7417 -4.5161 18 6 8.2486 -1.8089 -4.3908 19 1 8.5528 -2.1440 -3.4101 20 6 8.6953 -2.4763 -5.5207 21 7 8.3244 -2.0684 -6.7155 22 14 9.8228 -3.9555 -5.3471 23 1 10.0890 -4.2090 -3.9083 24 1 9.1718 -5.1474 -5.9479 25 1 11.1044 -3.6859 -6.0472 26 6 7.5407 -0.5540 -2.1470 27 6 7.2215 0.1291 -0.9912 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.8698 6.0170 -0.0852 34 1 5.2914 6.4617 -0.0002 35 1 6.8809 4.5617 0.0889 36 1 6.5254 1.7089 0.9608 37 1 5.4729 2.6924 -2.3456 38 1 6.0509 1.4791 -4.4061 39 1 8.6366 -2.5356 -7.5061 40 1 8.1176 -1.4655 -2.0935 41 1 7.5481 -0.2480 -0.0333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212606296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:26 Heat of formation + Delta-G solvation = -25.723834 kcal Electronic energy + Delta-G solvation = -27140.098297 eV Core-core repulsion = 23179.889441 eV Total energy + Delta-G solvation = -3960.208857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -41.06922 -39.63195 -38.91682 -37.22704 -36.36208 -34.69743 -32.73423 -32.11044 -31.62753 -30.53786 -29.91650 -27.31312 -25.48134 -25.06923 -23.50349 -22.93846 -21.93435 -21.34461 -20.74140 -18.34147 -17.97912 -17.44486 -17.07236 -16.92437 -16.48030 -16.28651 -16.11977 -15.21038 -14.52354 -14.40537 -14.12528 -13.79933 -13.66031 -13.45757 -13.43482 -13.38641 -12.88953 -12.76141 -12.67637 -12.45735 -12.02396 -11.89993 -11.64531 -11.55646 -11.36907 -11.03570 -10.62310 -10.54106 -10.48852 -10.36353 -10.16272 -10.07241 -9.37035 -9.21483 -9.11887 -8.48769 -8.15351 -6.49252 -6.32350 -3.89523 0.31626 0.91800 2.22679 2.42888 2.52901 2.58843 3.18498 3.19811 3.25187 3.50462 3.62638 4.03881 4.06398 4.55691 4.58918 4.65604 4.78303 4.86299 4.90924 5.02520 5.12752 5.21050 5.21339 5.39834 5.53668 5.66511 5.68622 5.73753 5.75771 5.80550 5.87234 6.07530 6.22793 6.29506 6.43476 6.53171 6.85491 6.91935 7.11520 7.32874 7.42413 7.45710 7.62082 7.86815 7.96495 8.07488 8.12440 9.13745 9.87903 10.86532 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013995 B = 0.003189 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.165481 B = 8779.255653 C = 9904.941262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.342 6.342 4 C 0.513 3.487 5 O -0.462 6.462 6 C 0.077 3.923 7 N -0.430 5.430 8 C 0.087 3.913 9 C -0.133 4.133 10 C -0.093 4.093 11 C 0.190 3.810 12 N -0.701 5.701 13 C 0.135 3.865 14 C -0.137 4.137 15 C -0.153 4.153 16 C 0.121 3.879 17 O -0.187 6.187 18 C -0.386 4.386 19 H 0.089 0.911 20 C 0.036 3.964 21 N -0.868 5.868 22 Si 0.938 3.062 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.192 4.192 27 C -0.120 4.120 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.165 0.835 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.406 0.594 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.267 0.733 40 H 0.129 0.871 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 12.499 16.520 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.258 6.258 4 C 0.354 3.646 5 O -0.346 6.346 6 C -0.061 4.061 7 N -0.141 5.141 8 C -0.074 4.074 9 C -0.154 4.154 10 C -0.121 4.121 11 C 0.091 3.909 12 N -0.335 5.335 13 C 0.041 3.959 14 C -0.159 4.159 15 C -0.173 4.173 16 C 0.068 3.932 17 O -0.092 6.092 18 C -0.463 4.463 19 H 0.107 0.893 20 C -0.167 4.167 21 N -0.505 5.505 22 Si 0.763 3.237 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.212 4.212 27 C -0.142 4.142 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.182 0.818 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.243 0.757 37 H 0.119 0.881 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.146 0.854 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.515 11.969 15.916 22.520 hybrid contribution 1.551 -0.791 0.455 1.799 sum -8.964 11.179 16.370 21.756 Atomic orbital electron populations 1.21779 0.92637 1.02806 1.03458 1.23052 0.95325 0.80225 1.02778 1.86646 1.23322 1.31865 1.83997 1.20550 0.81071 0.88561 0.74466 1.90975 1.60012 1.40786 1.42808 1.20789 0.90163 0.91042 1.04098 1.67673 1.38996 0.98976 1.08495 1.22875 0.94009 0.93766 0.96787 1.22422 0.94359 1.00470 0.98141 1.22163 1.01526 0.91272 0.97124 1.18173 0.88265 0.88856 0.95560 1.41158 1.52811 1.31265 1.08267 1.17109 1.00516 0.93682 0.84634 1.20078 1.04316 1.00524 0.90974 1.19948 1.04203 0.95441 0.97709 1.19228 0.95084 0.91803 0.87070 1.83983 1.59359 1.39418 1.26432 1.21298 1.25605 1.04935 0.94462 0.89340 1.25225 0.98040 0.99144 0.94290 1.70063 1.43119 1.39835 0.97463 0.85692 0.79263 0.80069 0.78647 1.19228 1.20305 1.20303 1.20980 1.06262 1.02349 0.91616 1.20157 1.02081 0.94264 0.97656 0.91641 0.91397 0.90291 0.90909 0.91368 0.81757 0.83840 0.83451 0.75674 0.88132 0.86566 0.92344 0.85361 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 37.16 0.38 -0.94 16 2 C 0.06 0.73 6.20 37.16 0.23 0.96 16 3 O -0.34 -5.04 10.04 -40.64 -0.41 -5.44 16 4 C 0.51 8.24 7.93 34.55 0.27 8.51 16 5 O -0.46 -8.37 13.48 -19.26 -0.26 -8.62 16 6 C 0.08 1.10 6.70 -82.85 -0.55 0.55 16 7 N -0.43 -5.51 10.11 -9.68 -0.10 -5.61 16 8 C 0.09 0.78 11.17 -17.54 -0.20 0.59 16 9 C -0.13 -1.03 10.10 -39.37 -0.40 -1.42 16 10 C -0.09 -0.92 10.11 -39.08 -0.40 -1.31 16 11 C 0.19 2.48 4.38 -83.45 -0.37 2.11 16 12 N -0.70 -10.06 4.05 -8.11 -0.03 -10.09 16 13 C 0.14 2.45 4.91 -83.68 -0.41 2.04 16 14 C -0.14 -2.68 9.30 -39.40 -0.37 -3.05 16 15 C -0.15 -3.44 9.98 -39.42 -0.39 -3.83 16 16 C 0.12 3.04 6.65 -39.08 -0.26 2.78 16 17 O -0.19 -5.53 9.75 0.00 0.00 -5.53 16 18 C -0.39 -11.13 9.48 30.87 0.29 -10.84 16 19 H 0.09 2.37 5.20 -52.48 -0.27 2.09 16 20 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 21 N -0.87 -26.21 13.67 55.48 0.76 -25.45 16 22 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 C -0.19 -4.34 9.16 -39.42 -0.36 -4.70 16 27 C -0.12 -2.31 9.89 -39.40 -0.39 -2.70 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.41 5.02 8.84 -40.82 -0.36 4.66 16 37 H 0.10 1.81 6.96 -52.49 -0.37 1.45 16 38 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.13 2.89 5.63 -52.49 -0.30 2.60 16 41 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 359.64 15.07 5.42 5.42 Total: -1.00 -34.98 359.64 -7.31 -42.29 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.66 Total: 7.26 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -3.01 Total: -10.34 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.63 Total: -41.15 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.67 Total: -19.60 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.98 -7.31 -42.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.565 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds