Wall clock time and date at job start Tue Mar 31 2020 16:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47308 * 2 1 4 4 C 1.34754 * 117.00056 * 179.97438 * 3 2 1 5 5 O 1.21493 * 120.00109 * 359.97438 * 4 3 2 6 6 C 1.47588 * 120.00057 * 180.02562 * 4 3 2 7 7 N 1.32931 * 119.81124 * 357.68789 * 6 4 3 8 8 C 1.31318 * 121.71399 * 179.97438 * 7 6 4 9 9 C 1.38873 * 121.13696 * 0.02562 * 8 7 6 10 10 C 1.38182 * 119.48352 * 359.97438 * 9 8 7 11 11 C 1.39627 * 118.42507 * 359.74685 * 10 9 8 12 12 N 1.38834 * 120.56679 * 180.24265 * 11 10 9 13 13 C 1.39795 * 119.99758 * 260.92083 * 12 11 10 14 14 C 1.38970 * 120.01243 * 6.17348 * 13 12 11 15 15 C 1.37994 * 119.99439 * 179.76665 * 14 13 12 16 16 C 1.38910 * 120.00671 * 0.48405 * 15 14 13 17 17 O 1.35784 * 119.99546 * 179.74548 * 16 15 14 18 18 C 1.34809 * 117.00085 * 174.66854 * 17 16 15 19 19 H 1.08005 * 120.00129 * 5.13269 * 18 17 16 20 20 C 1.38618 * 120.00072 * 185.13471 * 18 17 16 21 21 N 1.31587 * 120.00011 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00101 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47433 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47172 * 119.99822 * 22 20 18 25 25 H 1.48500 * 109.46761 * 239.99581 * 22 20 18 26 26 C 1.38916 * 120.01394 * 359.77412 * 16 15 14 27 27 C 1.37996 * 120.00626 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.47100 * 300.00350 * 1 2 3 29 29 H 1.09005 * 109.46611 * 59.99897 * 1 2 3 30 30 H 1.08994 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47488 * 240.00012 * 2 1 3 32 32 H 1.09003 * 109.47078 * 119.99885 * 2 1 3 33 33 H 1.07998 * 119.43398 * 179.97438 * 8 7 6 34 34 H 1.07993 * 120.25531 * 179.97438 * 9 8 7 35 35 H 1.08003 * 120.78273 * 180.02562 * 10 9 8 36 36 H 0.96999 * 119.99788 * 80.92620 * 12 11 10 37 37 H 1.08002 * 119.99936 * 359.97438 * 14 13 12 38 38 H 1.07999 * 119.99547 * 180.23746 * 15 14 13 39 39 H 0.97000 * 120.00292 * 180.02562 * 21 20 18 40 40 H 1.08001 * 120.00124 * 179.97438 * 26 16 15 41 41 H 1.08004 * 120.00166 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5454 0.0005 5 8 4.0900 0.5819 0.0015 6 6 3.9141 2.9092 0.0011 7 7 3.1018 3.9605 -0.0454 8 6 3.5632 5.1899 -0.0461 9 6 4.9275 5.4449 0.0015 10 6 5.8157 4.3875 0.0509 11 6 5.3032 3.0887 0.0567 12 7 6.1551 1.9938 0.1107 13 6 6.4789 1.3018 -1.0600 14 6 6.0539 1.7835 -2.2923 15 6 6.3779 1.1028 -3.4481 16 6 7.1203 -0.0693 -3.3791 17 8 7.4345 -0.7417 -4.5161 18 6 8.2486 -1.8089 -4.3908 19 1 8.5528 -2.1440 -3.4101 20 6 8.6953 -2.4763 -5.5207 21 7 8.3244 -2.0684 -6.7155 22 14 9.8228 -3.9555 -5.3471 23 1 10.0890 -4.2090 -3.9083 24 1 9.1718 -5.1474 -5.9479 25 1 11.1044 -3.6859 -6.0472 26 6 7.5407 -0.5540 -2.1470 27 6 7.2215 0.1291 -0.9912 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.8698 6.0170 -0.0852 34 1 5.2914 6.4617 -0.0002 35 1 6.8809 4.5617 0.0889 36 1 6.5254 1.7089 0.9608 37 1 5.4729 2.6924 -2.3456 38 1 6.0509 1.4791 -4.4061 39 1 8.6366 -2.5356 -7.5061 40 1 8.1176 -1.4655 -2.0935 41 1 7.5481 -0.2480 -0.0333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212606296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:22 Heat of formation + Delta-G solvation = -48.618826 kcal Electronic energy + Delta-G solvation = -27141.091099 eV Core-core repulsion = 23179.889441 eV Total energy + Delta-G solvation = -3961.201658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -42.10876 -40.82694 -40.49256 -38.78747 -37.62661 -36.09790 -34.16623 -33.56445 -32.53437 -31.99786 -31.28953 -28.85680 -27.21586 -26.27767 -24.53753 -23.97297 -23.49778 -22.58482 -22.13690 -19.83681 -19.35536 -19.03308 -18.28916 -18.18299 -17.69600 -17.57198 -17.22643 -16.30581 -16.10732 -15.82894 -15.52166 -15.43652 -15.17579 -14.70109 -14.53251 -14.36369 -14.26884 -14.17705 -13.69558 -13.63975 -13.54190 -13.38679 -13.04313 -12.91285 -12.75569 -12.54025 -12.37401 -12.08817 -11.82327 -11.55207 -11.30101 -11.15197 -10.92379 -10.74993 -10.28323 -10.08396 -9.84081 -8.41390 -8.11177 -6.06048 -0.60636 0.10916 0.52410 0.86851 1.35899 1.38642 1.44742 1.53059 1.54394 2.21022 2.37760 2.72493 2.87893 3.15052 3.21107 3.59191 3.70948 3.89477 3.95146 3.95788 4.03542 4.05002 4.08523 4.22611 4.29899 4.43510 4.48225 4.64193 4.76283 4.86186 4.88264 5.02615 5.03347 5.08231 5.09616 5.19051 5.35264 5.38467 5.44910 5.53623 5.71931 5.91346 6.08168 6.47684 6.53349 6.77522 6.88808 7.03937 7.89139 8.83243 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013995 B = 0.003189 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.165481 B = 8779.255653 C = 9904.941262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 O -0.348 6.348 4 C 0.506 3.494 5 O -0.498 6.498 6 C 0.050 3.950 7 N -0.455 5.455 8 C 0.091 3.909 9 C -0.107 4.107 10 C -0.091 4.091 11 C 0.165 3.835 12 N -0.688 5.688 13 C 0.171 3.829 14 C -0.139 4.139 15 C -0.159 4.159 16 C 0.073 3.927 17 O -0.240 6.240 18 C -0.407 4.407 19 H 0.099 0.901 20 C -0.027 4.027 21 N -0.926 5.926 22 Si 1.018 2.982 23 H -0.252 1.252 24 H -0.270 1.270 25 H -0.268 1.268 26 C -0.193 4.193 27 C -0.125 4.125 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.203 0.797 34 H 0.191 0.809 35 H 0.169 0.831 36 H 0.417 0.583 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.270 0.730 40 H 0.123 0.877 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 14.865 19.406 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.264 6.264 4 C 0.349 3.651 5 O -0.385 6.385 6 C -0.086 4.086 7 N -0.167 5.167 8 C -0.070 4.070 9 C -0.127 4.127 10 C -0.118 4.118 11 C 0.067 3.933 12 N -0.321 5.321 13 C 0.073 3.927 14 C -0.161 4.161 15 C -0.179 4.179 16 C 0.023 3.977 17 O -0.148 6.148 18 C -0.484 4.484 19 H 0.116 0.884 20 C -0.224 4.224 21 N -0.565 5.565 22 Si 0.838 3.162 23 H -0.175 1.175 24 H -0.195 1.195 25 H -0.193 1.193 26 C -0.212 4.212 27 C -0.147 4.147 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.219 0.781 34 H 0.209 0.791 35 H 0.186 0.814 36 H 0.256 0.744 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.141 0.859 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.643 14.393 18.890 26.024 hybrid contribution 1.347 -1.136 -0.153 1.769 sum -9.296 13.257 18.737 24.763 Atomic orbital electron populations 1.21791 0.89950 1.04341 1.03765 1.23288 0.97442 0.79242 1.02125 1.86654 1.22994 1.33188 1.83592 1.21120 0.81192 0.89368 0.73410 1.90931 1.60613 1.42041 1.44874 1.20643 0.90705 0.90674 1.06551 1.67657 1.39469 1.00002 1.09597 1.23650 0.95699 0.93238 0.94449 1.22919 0.93281 1.02030 0.94449 1.22414 1.03058 0.90083 0.96246 1.18420 0.87603 0.89535 0.97708 1.41063 1.52383 1.31289 1.07376 1.17179 0.97312 0.92486 0.85676 1.20185 1.04450 1.00954 0.90491 1.20109 1.03914 0.95099 0.98794 1.19658 0.97543 0.93273 0.87196 1.83934 1.61343 1.40773 1.28735 1.21815 1.25893 1.05317 0.95352 0.88358 1.26551 0.99685 1.02549 0.93584 1.70215 1.45581 1.42206 0.98546 0.84539 0.76784 0.75425 0.79500 1.17502 1.19519 1.19309 1.21051 1.05917 1.02389 0.91867 1.20430 1.02024 0.94367 0.97860 0.90722 0.91605 0.88140 0.92608 0.91028 0.78055 0.79148 0.81381 0.74404 0.86258 0.87115 0.92083 0.85940 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 10.29 71.98 0.74 -1.64 16 2 C 0.05 1.29 6.20 71.98 0.45 1.74 16 3 O -0.35 -10.33 10.04 -56.65 -0.57 -10.89 16 4 C 0.51 16.27 7.93 70.29 0.56 16.83 16 5 O -0.50 -18.20 13.48 19.86 0.27 -17.93 16 6 C 0.05 1.37 6.70 41.92 0.28 1.65 16 7 N -0.46 -10.57 10.11 -184.54 -1.87 -12.44 16 8 C 0.09 1.23 11.17 84.92 0.95 2.18 16 9 C -0.11 -1.05 10.10 22.41 0.23 -0.82 16 10 C -0.09 -1.39 10.11 22.59 0.23 -1.16 16 11 C 0.16 3.89 4.38 38.84 0.17 4.06 16 12 N -0.69 -18.29 4.05 -179.57 -0.73 -19.01 16 13 C 0.17 6.01 4.91 38.22 0.19 6.19 16 14 C -0.14 -5.38 9.30 22.39 0.21 -5.18 16 15 C -0.16 -7.46 9.98 22.37 0.22 -7.24 16 16 C 0.07 3.88 6.65 22.59 0.15 4.03 16 17 O -0.24 -15.18 9.75 -22.90 -0.22 -15.40 16 18 C -0.41 -24.71 9.48 67.91 0.64 -24.07 16 19 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 20 C -0.03 -1.62 5.49 84.82 0.47 -1.15 16 21 N -0.93 -58.83 13.67 21.61 0.30 -58.53 16 22 Si 1.02 44.48 29.55 68.60 2.03 46.51 16 23 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 C -0.19 -8.95 9.16 22.37 0.20 -8.74 16 27 C -0.13 -4.72 9.89 22.39 0.22 -4.50 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.13 8.14 -2.38 -0.02 1.12 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.19 0.18 8.06 -2.91 -0.02 0.16 16 35 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.42 9.28 8.84 -92.71 -0.82 8.46 16 37 H 0.12 4.15 6.96 -2.91 -0.02 4.13 16 38 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 39 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.12 5.72 5.63 -2.91 -0.02 5.70 16 41 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -83.61 359.64 5.37 -78.23 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.26 Total: 27.30 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 5.90 Total: -17.82 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -2.30 Total: -89.99 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.52 Total: -44.23 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -83.61 5.37 -78.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.615 kcal (2) G-P(sol) polarization free energy of solvation -83.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds