Wall clock time and date at job start Tue Mar 31 2020 16:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.46838 * 2 1 4 4 C 1.34745 * 116.99805 * 179.97438 * 3 2 1 5 5 O 1.21508 * 120.00276 * 0.02562 * 4 3 2 6 6 C 1.47400 * 120.00158 * 179.97438 * 4 3 2 7 7 C 1.39870 * 120.98081 * 359.97438 * 6 4 3 8 8 N 1.32176 * 118.97047 * 180.02562 * 7 6 4 9 9 C 1.31941 * 121.14550 * 0.02562 * 8 7 6 10 10 N 1.31724 * 122.21607 * 359.71272 * 9 8 7 11 11 C 1.32771 * 120.87536 * 0.57396 * 10 9 8 12 12 O 1.35268 * 120.62211 * 179.71867 * 11 10 9 13 13 C 1.42898 * 116.99813 * 359.72187 * 12 11 10 14 14 H 1.09001 * 109.47301 * 330.00392 * 13 12 11 15 15 C 1.50701 * 109.47251 * 90.00138 * 13 12 11 16 16 H 1.08004 * 119.99695 * 34.48448 * 15 13 12 17 17 C 1.37876 * 120.00339 * 214.48465 * 15 13 12 18 18 N 1.31518 * 119.99740 * 353.29493 * 17 15 13 19 19 Si 1.86801 * 120.00050 * 173.28983 * 17 15 13 20 20 H 1.48500 * 109.46851 * 89.99893 * 19 17 15 21 21 H 1.48500 * 109.47168 * 210.00148 * 19 17 15 22 22 H 1.48504 * 109.46974 * 330.00049 * 19 17 15 23 23 C 1.50700 * 109.47315 * 210.00560 * 13 12 11 24 24 C 1.38234 * 119.99480 * 321.19044 * 23 13 12 25 25 C 1.38242 * 119.99654 * 179.78719 * 24 23 13 26 26 C 1.38234 * 120.00140 * 0.44823 * 25 24 23 27 27 C 1.38238 * 119.99688 * 359.80685 * 26 25 24 28 28 C 1.38233 * 120.00378 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47125 * 60.00481 * 1 2 3 30 30 H 1.09005 * 109.46691 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47446 * 299.99737 * 1 2 3 32 32 H 1.08996 * 109.47446 * 240.00263 * 2 1 3 33 33 H 1.08995 * 109.47139 * 119.99848 * 2 1 3 34 34 H 1.07998 * 120.51528 * 0.04496 * 7 6 4 35 35 H 1.08005 * 118.89671 * 180.02562 * 9 8 7 36 36 H 0.96991 * 120.00010 * 4.76871 * 18 17 15 37 37 H 1.07996 * 120.00364 * 0.02562 * 24 23 13 38 38 H 1.07999 * 119.99912 * 180.27357 * 25 24 23 39 39 H 1.08000 * 120.00366 * 179.83276 * 26 25 24 40 40 H 1.08001 * 120.00012 * 180.02562 * 27 26 25 41 41 H 1.07998 * 120.00142 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3498 1.5456 0.0005 5 8 4.0900 0.5820 0.0005 6 6 3.9132 2.9077 0.0000 7 6 3.0803 4.0313 -0.0016 8 7 3.6280 5.2342 -0.0025 9 6 4.9385 5.3873 -0.0025 10 7 5.7653 4.3619 0.0040 11 6 5.3059 3.1162 -0.0004 12 8 6.1597 2.0670 0.0006 13 6 7.5567 2.3674 0.0005 14 1 7.7249 3.3135 -0.5141 15 6 8.0477 2.4743 1.4213 16 1 7.6242 1.8422 2.1879 17 6 9.0373 3.3789 1.7426 18 7 9.6451 4.0539 0.7915 19 14 9.5149 3.6457 3.5287 20 1 10.6018 2.7031 3.8966 21 1 9.9872 5.0417 3.7116 22 1 8.3351 3.4045 4.3978 23 6 8.3066 1.2695 -0.7089 24 6 7.9261 -0.0485 -0.5393 25 6 8.6112 -1.0554 -1.1936 26 6 9.6826 -0.7448 -2.0100 27 6 10.0664 0.5729 -2.1753 28 6 9.3785 1.5800 -1.5247 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0063 3.9178 -0.0017 35 1 5.3472 6.3871 -0.0029 36 1 9.3508 3.9673 -0.1286 37 1 7.0912 -0.2915 0.1012 38 1 8.3111 -2.0848 -1.0646 39 1 10.2196 -1.5316 -2.5190 40 1 10.9032 0.8156 -2.8135 41 1 9.6787 2.6094 -1.6536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226552737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:25 Heat of formation + Delta-G solvation = -48.747923 kcal Electronic energy + Delta-G solvation = -27816.942603 eV Core-core repulsion = 23855.735346 eV Total energy + Delta-G solvation = -3961.207256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -41.03723 -39.77090 -38.81036 -37.50149 -36.31354 -33.63703 -33.08401 -32.11100 -31.33664 -30.50075 -30.15174 -26.65440 -25.46949 -24.20209 -23.17658 -22.93273 -21.79036 -21.27939 -20.53551 -18.36935 -18.02331 -17.52491 -16.93587 -16.48966 -16.40752 -15.94072 -15.27492 -14.96473 -14.56461 -14.05389 -13.90629 -13.86118 -13.72956 -13.55092 -13.48417 -12.95997 -12.92521 -12.68449 -12.29402 -12.04801 -11.98311 -11.76451 -11.68421 -11.30642 -10.92213 -10.76337 -10.51131 -10.41374 -10.28507 -10.19545 -10.08874 -9.84587 -9.35140 -9.02906 -8.65764 -8.56661 -8.20483 -7.79576 -6.61743 -4.37051 0.66066 1.52054 2.09329 2.13233 2.65820 2.78338 3.32775 3.36964 3.50106 3.54378 4.07751 4.29393 4.33965 4.38215 4.58658 4.75964 4.82520 4.91227 5.05663 5.14077 5.16906 5.26498 5.53706 5.59039 5.60111 5.63345 5.63663 5.72517 5.80873 6.01100 6.25567 6.27455 6.40897 6.48203 6.56777 6.71402 6.81059 7.11069 7.15326 7.24887 7.41033 7.64250 7.75720 7.80116 7.96937 8.26394 8.36976 8.56462 9.34498 10.74567 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.009674 B = 0.004931 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.682267 B = 5676.731090 C = 7266.094315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.362 6.362 4 C 0.520 3.480 5 O -0.480 6.480 6 C -0.281 4.281 7 C 0.229 3.771 8 N -0.567 5.567 9 C 0.361 3.639 10 N -0.553 5.553 11 C 0.443 3.557 12 O -0.267 6.267 13 C 0.218 3.782 14 H 0.072 0.928 15 C -0.601 4.601 16 H 0.060 0.940 17 C 0.040 3.960 18 N -0.883 5.883 19 Si 1.072 2.928 20 H -0.285 1.285 21 H -0.280 1.280 22 H -0.287 1.287 23 C -0.042 4.042 24 C -0.101 4.101 25 C -0.129 4.129 26 C -0.145 4.145 27 C -0.124 4.124 28 C -0.114 4.114 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.179 0.821 35 H 0.200 0.800 36 H 0.272 0.728 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.686 -3.549 -3.870 13.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.280 6.280 4 C 0.362 3.638 5 O -0.366 6.366 6 C -0.289 4.289 7 C 0.063 3.937 8 N -0.288 5.288 9 C 0.074 3.926 10 N -0.283 5.283 11 C 0.256 3.744 12 O -0.166 6.166 13 C 0.164 3.836 14 H 0.090 0.910 15 C -0.638 4.638 16 H 0.078 0.922 17 C -0.168 4.168 18 N -0.518 5.518 19 Si 0.899 3.101 20 H -0.211 1.211 21 H -0.205 1.205 22 H -0.213 1.213 23 C -0.043 4.043 24 C -0.119 4.119 25 C -0.147 4.147 26 C -0.163 4.163 27 C -0.143 4.143 28 C -0.132 4.132 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.196 0.804 35 H 0.217 0.783 36 H 0.085 0.915 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.953 -2.561 -2.898 11.616 hybrid contribution -1.045 -1.758 -0.826 2.206 sum -11.998 -4.319 -3.725 13.284 Atomic orbital electron populations 1.21800 0.92737 1.02829 1.03448 1.22973 0.95030 0.80235 1.02732 1.86490 1.24035 1.32263 1.85197 1.20398 0.80399 0.89136 0.73841 1.90916 1.59848 1.41641 1.44211 1.19938 0.92446 0.93500 1.22967 1.23396 1.00484 0.85788 0.84025 1.68484 1.14297 1.25349 1.20622 1.25039 0.84835 0.98187 0.84565 1.68528 1.40279 0.98561 1.20940 1.20118 0.87157 0.86698 0.80446 1.86390 1.20997 1.28429 1.80778 1.19480 0.72791 0.93530 0.97761 0.90998 1.22027 1.25834 1.24098 0.91803 0.92154 1.25848 0.92803 0.91943 1.06218 1.70796 1.37392 1.41369 1.02206 0.83499 0.76091 0.76956 0.73531 1.21103 1.20513 1.21324 1.20204 0.96158 0.95125 0.92815 1.20971 0.99598 0.92272 0.99102 1.21012 0.96643 0.98563 0.98456 1.20896 0.98439 0.96071 1.00895 1.20937 0.99768 0.93010 1.00542 1.20897 0.96173 0.99360 0.96780 0.91517 0.90369 0.91471 0.91264 0.91209 0.80391 0.78313 0.91523 0.86154 0.87116 0.87211 0.86928 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 37.16 0.38 -0.76 16 2 C 0.06 0.71 6.20 37.16 0.23 0.94 16 3 O -0.36 -5.01 9.57 -40.61 -0.39 -5.40 16 4 C 0.52 9.14 7.90 34.46 0.27 9.41 16 5 O -0.48 -9.95 15.11 -26.38 -0.40 -10.34 16 6 C -0.28 -5.04 5.92 -104.58 -0.62 -5.65 16 7 C 0.23 3.35 10.90 -16.79 -0.18 3.17 16 8 N -0.57 -8.69 10.42 -14.27 -0.15 -8.84 16 9 C 0.36 5.94 12.26 -92.09 -1.13 4.81 16 10 N -0.55 -11.44 8.80 -14.31 -0.13 -11.57 16 11 C 0.44 9.52 7.50 -16.17 -0.12 9.39 16 12 O -0.27 -6.44 7.28 -38.65 -0.28 -6.72 16 13 C 0.22 5.48 1.94 -29.03 -0.06 5.43 16 14 H 0.07 1.89 5.25 -51.93 -0.27 1.61 16 15 C -0.60 -16.44 8.62 -34.44 -0.30 -16.74 16 16 H 0.06 1.73 7.82 -52.48 -0.41 1.31 16 17 C 0.04 1.08 5.45 -17.82 -0.10 0.99 16 18 N -0.88 -24.64 13.63 55.43 0.76 -23.89 16 19 Si 1.07 24.62 29.91 -169.99 -5.08 19.53 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 23 C -0.04 -1.00 4.96 -104.62 -0.52 -1.52 16 24 C -0.10 -2.24 9.36 -39.58 -0.37 -2.62 16 25 C -0.13 -2.44 10.05 -39.58 -0.40 -2.83 16 26 C -0.14 -2.57 10.05 -39.58 -0.40 -2.97 16 27 C -0.12 -2.35 10.05 -39.58 -0.40 -2.75 16 28 C -0.11 -2.49 9.49 -39.58 -0.38 -2.87 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.18 1.94 7.71 -52.49 -0.40 1.53 16 35 H 0.20 2.56 8.06 -52.48 -0.42 2.14 16 36 H 0.27 7.50 5.23 -40.82 -0.21 7.29 16 37 H 0.12 2.76 7.74 -52.49 -0.41 2.35 16 38 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.12 2.61 6.88 -52.49 -0.36 2.25 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -32.03 360.52 -8.98 -41.01 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.67 Total: 5.35 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -4.08 Total: -4.56 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.48 Total: -44.30 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -1.07 Total: -22.46 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.53 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.03 -8.98 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226552737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.738 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds