Wall clock time and date at job start Tue Mar 31 2020 16:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.46838 * 2 1 4 4 C 1.34745 * 116.99805 * 179.97438 * 3 2 1 5 5 O 1.21508 * 120.00276 * 0.02562 * 4 3 2 6 6 C 1.47400 * 120.00158 * 179.97438 * 4 3 2 7 7 C 1.39870 * 120.98081 * 359.97438 * 6 4 3 8 8 N 1.32176 * 118.97047 * 180.02562 * 7 6 4 9 9 C 1.31941 * 121.14550 * 0.02562 * 8 7 6 10 10 N 1.31724 * 122.21607 * 359.71272 * 9 8 7 11 11 C 1.32771 * 120.87536 * 0.57396 * 10 9 8 12 12 O 1.35268 * 120.62211 * 179.71867 * 11 10 9 13 13 C 1.42898 * 116.99813 * 359.72187 * 12 11 10 14 14 H 1.09001 * 109.47301 * 330.00392 * 13 12 11 15 15 C 1.50701 * 109.47251 * 90.00138 * 13 12 11 16 16 H 1.08004 * 119.99695 * 34.48448 * 15 13 12 17 17 C 1.37876 * 120.00339 * 214.48465 * 15 13 12 18 18 N 1.31518 * 119.99740 * 353.29493 * 17 15 13 19 19 Si 1.86801 * 120.00050 * 173.28983 * 17 15 13 20 20 H 1.48500 * 109.46851 * 89.99893 * 19 17 15 21 21 H 1.48500 * 109.47168 * 210.00148 * 19 17 15 22 22 H 1.48504 * 109.46974 * 330.00049 * 19 17 15 23 23 C 1.50700 * 109.47315 * 210.00560 * 13 12 11 24 24 C 1.38234 * 119.99480 * 321.19044 * 23 13 12 25 25 C 1.38242 * 119.99654 * 179.78719 * 24 23 13 26 26 C 1.38234 * 120.00140 * 0.44823 * 25 24 23 27 27 C 1.38238 * 119.99688 * 359.80685 * 26 25 24 28 28 C 1.38233 * 120.00378 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47125 * 60.00481 * 1 2 3 30 30 H 1.09005 * 109.46691 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47446 * 299.99737 * 1 2 3 32 32 H 1.08996 * 109.47446 * 240.00263 * 2 1 3 33 33 H 1.08995 * 109.47139 * 119.99848 * 2 1 3 34 34 H 1.07998 * 120.51528 * 0.04496 * 7 6 4 35 35 H 1.08005 * 118.89671 * 180.02562 * 9 8 7 36 36 H 0.96991 * 120.00010 * 4.76871 * 18 17 15 37 37 H 1.07996 * 120.00364 * 0.02562 * 24 23 13 38 38 H 1.07999 * 119.99912 * 180.27357 * 25 24 23 39 39 H 1.08000 * 120.00366 * 179.83276 * 26 25 24 40 40 H 1.08001 * 120.00012 * 180.02562 * 27 26 25 41 41 H 1.07998 * 120.00142 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3498 1.5456 0.0005 5 8 4.0900 0.5820 0.0005 6 6 3.9132 2.9077 0.0000 7 6 3.0803 4.0313 -0.0016 8 7 3.6280 5.2342 -0.0025 9 6 4.9385 5.3873 -0.0025 10 7 5.7653 4.3619 0.0040 11 6 5.3059 3.1162 -0.0004 12 8 6.1597 2.0670 0.0006 13 6 7.5567 2.3674 0.0005 14 1 7.7249 3.3135 -0.5141 15 6 8.0477 2.4743 1.4213 16 1 7.6242 1.8422 2.1879 17 6 9.0373 3.3789 1.7426 18 7 9.6451 4.0539 0.7915 19 14 9.5149 3.6457 3.5287 20 1 10.6018 2.7031 3.8966 21 1 9.9872 5.0417 3.7116 22 1 8.3351 3.4045 4.3978 23 6 8.3066 1.2695 -0.7089 24 6 7.9261 -0.0485 -0.5393 25 6 8.6112 -1.0554 -1.1936 26 6 9.6826 -0.7448 -2.0100 27 6 10.0664 0.5729 -2.1753 28 6 9.3785 1.5800 -1.5247 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0063 3.9178 -0.0017 35 1 5.3472 6.3871 -0.0029 36 1 9.3508 3.9673 -0.1286 37 1 7.0912 -0.2915 0.1012 38 1 8.3111 -2.0848 -1.0646 39 1 10.2196 -1.5316 -2.5190 40 1 10.9032 0.8156 -2.8135 41 1 9.6787 2.6094 -1.6536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226552737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:22 Heat of formation + Delta-G solvation = -66.660284 kcal Electronic energy + Delta-G solvation = -27817.719341 eV Core-core repulsion = 23855.735346 eV Total energy + Delta-G solvation = -3961.983994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.47258 -41.10395 -40.43597 -39.10013 -37.62022 -35.53828 -34.51437 -33.46185 -32.51489 -31.99381 -31.73692 -28.49082 -26.79036 -25.90728 -24.68757 -24.08006 -23.36369 -22.56909 -22.15966 -20.04518 -19.39968 -19.12980 -18.56931 -17.74642 -17.69878 -17.43410 -16.83225 -16.43282 -16.13345 -15.74569 -15.57469 -15.29658 -15.04315 -14.93339 -14.87416 -14.38812 -14.27837 -14.11759 -13.63151 -13.61072 -13.37970 -12.93383 -12.90649 -12.73217 -12.54182 -12.42106 -12.06431 -12.00064 -11.79775 -11.62268 -11.54205 -11.38800 -11.12187 -10.67151 -10.46827 -10.19389 -9.80019 -9.52211 -8.73549 -6.50286 -0.71035 0.07990 0.49949 0.52966 1.39521 1.44557 1.45291 1.53039 1.71482 1.95151 2.44931 2.67600 2.87919 3.03861 3.06389 3.11275 3.53981 3.60171 4.00733 4.01379 4.02552 4.11045 4.13639 4.22713 4.31289 4.35799 4.39548 4.57705 4.72897 4.78477 4.83130 4.95533 5.08087 5.10799 5.11825 5.19569 5.37108 5.57698 5.59397 5.65110 5.77255 5.79439 5.85161 6.15857 6.33021 6.44444 6.64148 6.93790 7.28119 8.61990 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.009674 B = 0.004931 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.682267 B = 5676.731090 C = 7266.094315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 O -0.347 6.347 4 C 0.524 3.476 5 O -0.520 6.520 6 C -0.291 4.291 7 C 0.251 3.749 8 N -0.554 5.554 9 C 0.362 3.638 10 N -0.590 5.590 11 C 0.410 3.590 12 O -0.287 6.287 13 C 0.229 3.771 14 H 0.051 0.949 15 C -0.614 4.614 16 H 0.034 0.966 17 C 0.003 3.997 18 N -0.900 5.900 19 Si 1.110 2.890 20 H -0.273 1.273 21 H -0.270 1.270 22 H -0.283 1.283 23 C -0.074 4.074 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.130 4.130 27 C -0.120 4.120 28 C -0.134 4.134 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.225 0.775 35 H 0.232 0.768 36 H 0.264 0.736 37 H 0.098 0.902 38 H 0.144 0.856 39 H 0.158 0.842 40 H 0.147 0.853 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.794 -4.271 -4.474 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 O -0.264 6.264 4 C 0.368 3.632 5 O -0.410 6.410 6 C -0.298 4.298 7 C 0.085 3.915 8 N -0.273 5.273 9 C 0.076 3.924 10 N -0.321 5.321 11 C 0.224 3.776 12 O -0.188 6.188 13 C 0.175 3.825 14 H 0.069 0.931 15 C -0.651 4.651 16 H 0.052 0.948 17 C -0.200 4.200 18 N -0.535 5.535 19 Si 0.932 3.068 20 H -0.198 1.198 21 H -0.195 1.195 22 H -0.209 1.209 23 C -0.075 4.075 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.148 4.148 27 C -0.138 4.138 28 C -0.153 4.153 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.241 0.759 35 H 0.248 0.752 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.162 0.838 39 H 0.176 0.824 40 H 0.165 0.835 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.113 -3.259 -3.518 13.028 hybrid contribution -0.878 -1.571 -0.737 1.945 sum -12.991 -4.829 -4.255 14.498 Atomic orbital electron populations 1.21821 0.89346 1.04550 1.04127 1.23359 0.97517 0.78688 1.02413 1.86484 1.21520 1.34123 1.84300 1.20398 0.81367 0.88502 0.72886 1.90901 1.61089 1.42779 1.46226 1.20137 0.91274 0.95046 1.23387 1.24090 1.01913 0.84265 0.81262 1.68637 1.13479 1.25344 1.19861 1.25710 0.85135 0.98446 0.83093 1.68491 1.42112 0.99123 1.22349 1.20556 0.88254 0.86739 0.82068 1.86329 1.20555 1.29820 1.82071 1.19174 0.73569 0.93341 0.96463 0.93117 1.22090 1.26176 1.24095 0.92741 0.94774 1.26992 0.92619 0.91453 1.08982 1.70865 1.38134 1.42398 1.02130 0.83018 0.76315 0.77534 0.69915 1.19847 1.19508 1.20863 1.20251 0.97151 0.95410 0.94645 1.20929 1.00094 0.92761 1.00303 1.21391 0.96231 0.99247 0.97271 1.21412 0.97337 0.96678 0.99386 1.21355 0.99869 0.92854 0.99697 1.20961 0.96613 0.99786 0.97896 0.90707 0.88117 0.90860 0.91544 0.91806 0.75879 0.75187 0.92390 0.88370 0.83816 0.82425 0.83493 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 10.29 71.98 0.74 -1.04 16 2 C 0.05 1.14 6.20 71.98 0.45 1.59 16 3 O -0.35 -9.27 9.57 -56.56 -0.54 -9.81 16 4 C 0.52 18.82 7.90 70.23 0.56 19.38 16 5 O -0.52 -22.73 15.11 26.61 0.40 -22.33 16 6 C -0.29 -10.62 5.92 -19.84 -0.12 -10.74 16 7 C 0.25 6.92 10.90 85.04 0.93 7.85 16 8 N -0.55 -16.08 10.42 -199.07 -2.07 -18.16 16 9 C 0.36 11.86 12.26 180.86 2.22 14.07 16 10 N -0.59 -25.52 8.80 -312.01 -2.75 -28.27 16 11 C 0.41 18.60 7.50 85.18 0.64 19.24 16 12 O -0.29 -14.94 7.28 -65.30 -0.48 -15.41 16 13 C 0.23 12.36 1.94 29.10 0.06 12.42 16 14 H 0.05 2.89 5.25 -2.39 -0.01 2.88 16 15 C -0.61 -35.73 8.62 25.60 0.22 -35.51 16 16 H 0.03 2.09 7.82 -2.91 -0.02 2.07 16 17 C 0.00 0.16 5.45 84.65 0.46 0.62 16 18 N -0.90 -52.25 13.63 21.45 0.29 -51.96 16 19 Si 1.11 50.81 29.91 68.60 2.05 52.86 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 C -0.07 -3.70 4.96 -19.87 -0.10 -3.80 16 24 C -0.12 -5.66 9.36 22.27 0.21 -5.45 16 25 C -0.12 -4.51 10.05 22.27 0.22 -4.29 16 26 C -0.13 -4.23 10.05 22.27 0.22 -4.00 16 27 C -0.12 -4.33 10.05 22.27 0.22 -4.11 16 28 C -0.13 -6.08 9.49 22.27 0.21 -5.86 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.22 4.03 7.71 -2.91 -0.02 4.00 16 35 H 0.23 5.74 8.06 -2.91 -0.02 5.72 16 36 H 0.26 15.44 5.23 -92.72 -0.48 14.96 16 37 H 0.10 4.86 7.74 -2.91 -0.02 4.83 16 38 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 39 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.15 4.23 8.06 -2.91 -0.02 4.20 16 41 H 0.10 4.88 6.88 -2.91 -0.02 4.86 16 Total: -1.00 -75.56 360.52 5.39 -70.16 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 1.35 Total: 22.54 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 7.14 Total: 0.37 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -4.53 Total: -98.39 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -0.61 Total: -47.55 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.05 Total: 52.86 kcal Total: -75.56 5.39 -70.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226552737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.504 kcal (2) G-P(sol) polarization free energy of solvation -75.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds