Wall clock time and date at job start Tue Mar 31 2020 16:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47303 * 2 1 4 4 C 1.34747 * 117.00210 * 180.02562 * 3 2 1 5 5 O 1.21511 * 119.99797 * 359.97438 * 4 3 2 6 6 C 1.47395 * 120.00333 * 180.02562 * 4 3 2 7 7 C 1.39865 * 120.98374 * 359.97438 * 6 4 3 8 8 N 1.32179 * 118.97366 * 179.75194 * 7 6 4 9 9 C 1.31942 * 121.14634 * 0.25531 * 8 7 6 10 10 N 1.31723 * 122.21041 * 359.97438 * 9 8 7 11 11 C 1.32771 * 120.87890 * 0.02562 * 10 9 8 12 12 O 1.35269 * 120.61696 * 179.97438 * 11 10 9 13 13 C 1.42902 * 117.00343 * 359.97438 * 12 11 10 14 14 H 1.08999 * 109.46668 * 30.00214 * 13 12 11 15 15 C 1.50704 * 109.46828 * 270.00371 * 13 12 11 16 16 H 1.07996 * 119.99829 * 324.81897 * 15 13 12 17 17 C 1.37875 * 119.99614 * 144.82444 * 15 13 12 18 18 N 1.31519 * 119.99600 * 172.99367 * 17 15 13 19 19 Si 1.86798 * 120.00271 * 352.98664 * 17 15 13 20 20 H 1.48508 * 109.46993 * 85.15069 * 19 17 15 21 21 H 1.48500 * 109.47325 * 205.14889 * 19 17 15 22 22 H 1.48500 * 109.47292 * 325.15314 * 19 17 15 23 23 C 1.50699 * 109.47167 * 150.00311 * 13 12 11 24 24 C 1.38230 * 119.99877 * 36.39482 * 23 13 12 25 25 C 1.38244 * 119.99722 * 179.80938 * 24 23 13 26 26 C 1.38234 * 119.99773 * 0.40125 * 25 24 23 27 27 C 1.38234 * 120.00064 * 359.84922 * 26 25 24 28 28 C 1.38232 * 120.00044 * 359.96324 * 27 26 25 29 29 H 1.08994 * 109.47383 * 59.99788 * 1 2 3 30 30 H 1.09001 * 109.47252 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46916 * 299.99900 * 1 2 3 32 32 H 1.09003 * 109.46900 * 239.99554 * 2 1 3 33 33 H 1.08999 * 109.47138 * 119.99814 * 2 1 3 34 34 H 1.08000 * 120.51574 * 0.02738 * 7 6 4 35 35 H 1.07998 * 118.89518 * 180.02562 * 9 8 7 36 36 H 0.97005 * 119.99458 * 179.97438 * 18 17 15 37 37 H 1.07995 * 120.00471 * 0.02562 * 24 23 13 38 38 H 1.07997 * 120.00091 * 180.22945 * 25 24 23 39 39 H 1.08001 * 119.99744 * 179.83798 * 26 25 24 40 40 H 1.08006 * 120.00050 * 179.97438 * 27 26 25 41 41 H 1.08004 * 119.99870 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0901 0.5818 -0.0005 6 6 3.9133 2.9075 0.0000 7 6 3.0806 4.0312 0.0005 8 7 3.6284 5.2341 0.0060 9 6 4.9389 5.3872 0.0059 10 7 5.7655 4.3617 0.0009 11 6 5.3060 3.1160 -0.0048 12 8 6.1598 2.0668 -0.0105 13 6 7.5569 2.3671 -0.0105 14 1 7.7255 3.3112 0.5075 15 6 8.0465 2.4792 -1.4314 16 1 7.6303 1.8423 -2.1978 17 6 9.0259 3.3949 -1.7528 18 7 9.5511 3.4000 -2.9585 19 14 9.6066 4.6284 -0.4758 20 1 10.6641 4.0105 0.3642 21 1 10.1549 5.8274 -1.1591 22 1 8.4627 5.0277 0.3829 23 6 8.3073 1.2665 0.6941 24 6 7.8959 -0.0463 0.5597 25 6 8.5867 -1.0564 1.2029 26 6 9.6838 -0.7527 1.9870 27 6 10.0921 0.5607 2.1255 28 6 9.4037 1.5703 1.4792 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0065 3.9178 0.0010 35 1 5.3475 6.3869 0.0109 36 1 10.2399 4.0445 -3.1847 37 1 7.0370 -0.2833 -0.0505 38 1 8.2675 -2.0825 1.0949 39 1 10.2219 -1.5415 2.4916 40 1 10.9491 0.7981 2.7385 41 1 9.7224 2.5965 1.5878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226552738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:28 Heat of formation + Delta-G solvation = -41.413392 kcal Electronic energy + Delta-G solvation = -27862.974373 eV Core-core repulsion = 23902.085166 eV Total energy + Delta-G solvation = -3960.889207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07498 -39.77960 -38.87884 -37.56982 -36.31281 -33.33210 -33.08201 -32.15057 -31.50376 -30.79460 -30.23581 -27.41714 -25.49664 -24.34819 -23.15545 -22.72420 -21.94186 -21.28797 -20.41323 -18.16724 -18.06256 -17.39415 -17.25581 -16.48880 -16.42300 -16.06054 -15.27285 -15.07735 -14.73201 -14.37131 -13.98681 -13.90407 -13.72835 -13.51069 -13.15580 -12.95361 -12.91745 -12.84828 -12.68433 -12.15600 -11.97898 -11.91096 -11.71668 -11.25624 -11.15781 -10.95172 -10.50137 -10.46596 -10.38114 -10.10685 -9.97073 -9.80244 -9.65945 -9.07928 -8.82768 -8.66454 -8.28064 -7.94021 -6.32895 -4.37779 0.63301 1.48343 2.00234 2.05859 2.65492 2.77583 3.15949 3.25194 3.31532 3.44292 4.04132 4.23421 4.25997 4.32368 4.48408 4.75476 4.83829 4.91518 5.00006 5.02461 5.17403 5.24433 5.47443 5.51941 5.55405 5.62871 5.64838 5.66959 5.81872 5.86596 6.15027 6.20875 6.34997 6.41853 6.48120 6.60699 6.71836 7.04045 7.08385 7.18385 7.21351 7.32659 7.65428 7.75590 7.96699 8.21776 8.29677 8.74198 9.25624 10.77896 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.005099 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.327757 B = 5490.363673 C = 7234.733115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.362 6.362 4 C 0.520 3.480 5 O -0.479 6.479 6 C -0.277 4.277 7 C 0.230 3.770 8 N -0.566 5.566 9 C 0.361 3.639 10 N -0.559 5.559 11 C 0.444 3.556 12 O -0.262 6.262 13 C 0.202 3.798 14 H 0.072 0.928 15 C -0.523 4.523 16 H 0.083 0.917 17 C 0.092 3.908 18 N -0.876 5.876 19 Si 0.856 3.144 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.238 1.238 23 C -0.044 4.044 24 C -0.096 4.096 25 C -0.124 4.124 26 C -0.142 4.142 27 C -0.122 4.122 28 C -0.126 4.126 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.180 0.820 35 H 0.200 0.800 36 H 0.270 0.730 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.466 -2.151 8.869 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.280 6.280 4 C 0.362 3.638 5 O -0.365 6.365 6 C -0.285 4.285 7 C 0.065 3.935 8 N -0.286 5.286 9 C 0.074 3.926 10 N -0.289 5.289 11 C 0.257 3.743 12 O -0.161 6.161 13 C 0.148 3.852 14 H 0.090 0.910 15 C -0.560 4.560 16 H 0.101 0.899 17 C -0.114 4.114 18 N -0.511 5.511 19 Si 0.682 3.318 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.162 1.162 23 C -0.044 4.044 24 C -0.115 4.115 25 C -0.142 4.142 26 C -0.160 4.160 27 C -0.141 4.141 28 C -0.144 4.144 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.197 0.803 35 H 0.216 0.784 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.663 -1.894 8.728 14.689 hybrid contribution 0.496 -0.197 0.243 0.587 sum -11.166 -2.091 8.970 14.475 Atomic orbital electron populations 1.21800 0.92757 1.02834 1.03439 1.22979 0.95015 0.80193 1.02778 1.86486 1.23999 1.32311 1.85180 1.20370 0.80436 0.89090 0.73883 1.90918 1.59849 1.41594 1.44112 1.19924 0.92341 0.93579 1.22654 1.23412 1.00536 0.85734 0.83858 1.68482 1.14198 1.25404 1.20531 1.24992 0.84918 0.98089 0.84608 1.68514 1.40396 0.98687 1.21327 1.20097 0.87201 0.86585 0.80400 1.86404 1.20460 1.28256 1.80979 1.19780 0.73717 0.93682 0.97995 0.91017 1.20991 1.22247 1.21685 0.91062 0.89898 1.24899 0.94906 0.96229 0.95343 1.69887 1.25924 1.35551 1.19786 0.87155 0.80199 0.81744 0.82705 1.19515 1.20981 1.16165 1.20131 0.95852 0.95354 0.93107 1.21008 0.99655 0.92047 0.98746 1.21059 0.96198 0.98714 0.98251 1.20920 0.98097 0.96071 1.00919 1.20909 0.99653 0.93035 1.00456 1.20896 0.96503 0.99209 0.97827 0.91463 0.90367 0.91544 0.91137 0.91246 0.80294 0.78397 0.91994 0.85656 0.86848 0.87015 0.86826 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.16 0.38 -0.74 16 2 C 0.06 0.70 6.20 37.16 0.23 0.93 16 3 O -0.36 -4.88 9.57 -40.62 -0.39 -5.27 16 4 C 0.52 8.90 7.90 34.46 0.27 9.17 16 5 O -0.48 -9.66 15.11 -26.38 -0.40 -10.06 16 6 C -0.28 -4.83 5.92 -104.58 -0.62 -5.45 16 7 C 0.23 3.26 10.90 -16.79 -0.18 3.08 16 8 N -0.57 -8.40 10.42 -14.28 -0.15 -8.55 16 9 C 0.36 5.73 12.27 -92.09 -1.13 4.60 16 10 N -0.56 -11.17 8.80 -14.31 -0.13 -11.30 16 11 C 0.44 9.25 7.50 -16.17 -0.12 9.13 16 12 O -0.26 -6.12 7.19 -38.65 -0.28 -6.40 16 13 C 0.20 4.91 1.84 -29.03 -0.05 4.85 16 14 H 0.07 1.73 3.75 -51.93 -0.19 1.54 16 15 C -0.52 -14.59 9.17 -34.44 -0.32 -14.91 16 16 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 17 C 0.09 2.58 5.47 -17.82 -0.10 2.48 16 18 N -0.88 -25.94 13.96 55.43 0.77 -25.17 16 19 Si 0.86 20.23 25.61 -169.99 -4.35 15.88 16 20 H -0.27 -6.16 6.43 56.52 0.36 -5.80 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.24 -5.28 6.36 56.52 0.36 -4.92 16 23 C -0.04 -1.00 4.98 -104.63 -0.52 -1.52 16 24 C -0.10 -2.06 9.35 -39.58 -0.37 -2.43 16 25 C -0.12 -2.25 10.05 -39.58 -0.40 -2.65 16 26 C -0.14 -2.40 10.05 -39.58 -0.40 -2.79 16 27 C -0.12 -2.19 10.05 -39.58 -0.40 -2.59 16 28 C -0.13 -2.64 9.35 -39.59 -0.37 -3.01 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.18 1.87 7.71 -52.49 -0.40 1.47 16 35 H 0.20 2.41 8.06 -52.49 -0.42 1.99 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.13 2.77 7.67 -52.49 -0.40 2.37 16 38 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.11 2.32 5.79 -52.48 -0.30 2.01 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -32.81 356.04 -8.39 -41.20 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -4.75 Total: 6.14 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -4.09 Total: -1.83 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.50 Total: -45.02 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -1.07 Total: -21.73 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.35 Total: 15.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.81 -8.39 -41.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226552738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.211 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds