Wall clock time and date at job start Tue Mar 31 2020 16:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47303 * 2 1 4 4 C 1.34747 * 117.00210 * 180.02562 * 3 2 1 5 5 O 1.21511 * 119.99797 * 359.97438 * 4 3 2 6 6 C 1.47395 * 120.00333 * 180.02562 * 4 3 2 7 7 C 1.39865 * 120.98374 * 359.97438 * 6 4 3 8 8 N 1.32179 * 118.97366 * 179.75194 * 7 6 4 9 9 C 1.31942 * 121.14634 * 0.25531 * 8 7 6 10 10 N 1.31723 * 122.21041 * 359.97438 * 9 8 7 11 11 C 1.32771 * 120.87890 * 0.02562 * 10 9 8 12 12 O 1.35269 * 120.61696 * 179.97438 * 11 10 9 13 13 C 1.42902 * 117.00343 * 359.97438 * 12 11 10 14 14 H 1.08999 * 109.46668 * 30.00214 * 13 12 11 15 15 C 1.50704 * 109.46828 * 270.00371 * 13 12 11 16 16 H 1.07996 * 119.99829 * 324.81897 * 15 13 12 17 17 C 1.37875 * 119.99614 * 144.82444 * 15 13 12 18 18 N 1.31519 * 119.99600 * 172.99367 * 17 15 13 19 19 Si 1.86798 * 120.00271 * 352.98664 * 17 15 13 20 20 H 1.48508 * 109.46993 * 85.15069 * 19 17 15 21 21 H 1.48500 * 109.47325 * 205.14889 * 19 17 15 22 22 H 1.48500 * 109.47292 * 325.15314 * 19 17 15 23 23 C 1.50699 * 109.47167 * 150.00311 * 13 12 11 24 24 C 1.38230 * 119.99877 * 36.39482 * 23 13 12 25 25 C 1.38244 * 119.99722 * 179.80938 * 24 23 13 26 26 C 1.38234 * 119.99773 * 0.40125 * 25 24 23 27 27 C 1.38234 * 120.00064 * 359.84922 * 26 25 24 28 28 C 1.38232 * 120.00044 * 359.96324 * 27 26 25 29 29 H 1.08994 * 109.47383 * 59.99788 * 1 2 3 30 30 H 1.09001 * 109.47252 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46916 * 299.99900 * 1 2 3 32 32 H 1.09003 * 109.46900 * 239.99554 * 2 1 3 33 33 H 1.08999 * 109.47138 * 119.99814 * 2 1 3 34 34 H 1.08000 * 120.51574 * 0.02738 * 7 6 4 35 35 H 1.07998 * 118.89518 * 180.02562 * 9 8 7 36 36 H 0.97005 * 119.99458 * 179.97438 * 18 17 15 37 37 H 1.07995 * 120.00471 * 0.02562 * 24 23 13 38 38 H 1.07997 * 120.00091 * 180.22945 * 25 24 23 39 39 H 1.08001 * 119.99744 * 179.83798 * 26 25 24 40 40 H 1.08006 * 120.00050 * 179.97438 * 27 26 25 41 41 H 1.08004 * 119.99870 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0901 0.5818 -0.0005 6 6 3.9133 2.9075 0.0000 7 6 3.0806 4.0312 0.0005 8 7 3.6284 5.2341 0.0060 9 6 4.9389 5.3872 0.0059 10 7 5.7655 4.3617 0.0009 11 6 5.3060 3.1160 -0.0048 12 8 6.1598 2.0668 -0.0105 13 6 7.5569 2.3671 -0.0105 14 1 7.7255 3.3112 0.5075 15 6 8.0465 2.4792 -1.4314 16 1 7.6303 1.8423 -2.1978 17 6 9.0259 3.3949 -1.7528 18 7 9.5511 3.4000 -2.9585 19 14 9.6066 4.6284 -0.4758 20 1 10.6641 4.0105 0.3642 21 1 10.1549 5.8274 -1.1591 22 1 8.4627 5.0277 0.3829 23 6 8.3073 1.2665 0.6941 24 6 7.8959 -0.0463 0.5597 25 6 8.5867 -1.0564 1.2029 26 6 9.6838 -0.7527 1.9870 27 6 10.0921 0.5607 2.1255 28 6 9.4037 1.5703 1.4792 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0065 3.9178 0.0010 35 1 5.3475 6.3869 0.0109 36 1 10.2399 4.0445 -3.1847 37 1 7.0370 -0.2833 -0.0505 38 1 8.2675 -2.0825 1.0949 39 1 10.2219 -1.5415 2.4916 40 1 10.9491 0.7981 2.7385 41 1 9.7224 2.5965 1.5878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226552738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:27 Heat of formation + Delta-G solvation = -61.803096 kcal Electronic energy + Delta-G solvation = -27863.858537 eV Core-core repulsion = 23902.085166 eV Total energy + Delta-G solvation = -3961.773371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.46071 -41.07832 -40.42911 -39.10717 -37.59030 -35.21556 -34.49820 -33.61377 -32.75758 -32.07714 -31.72790 -29.25012 -26.76869 -25.94104 -24.44265 -24.05335 -23.42769 -22.53172 -21.98750 -19.68511 -19.50417 -19.28660 -18.68362 -17.74139 -17.67340 -17.46985 -16.89134 -16.49519 -16.21348 -16.05512 -15.47624 -15.05333 -14.99280 -14.87281 -14.75153 -14.66224 -14.33534 -14.26100 -13.76517 -13.58926 -13.51157 -12.97767 -12.90462 -12.72520 -12.64158 -12.45520 -12.10510 -11.94499 -11.81315 -11.54636 -11.52124 -11.41945 -11.33452 -10.88919 -10.46564 -10.21662 -9.78845 -9.53991 -8.46656 -6.57586 -0.68249 0.09316 0.48741 0.54479 1.26482 1.32637 1.42281 1.46486 1.48097 1.92704 2.25066 2.69495 2.80634 3.00999 3.04405 3.09508 3.55810 3.61007 4.00911 4.02064 4.03674 4.11804 4.14198 4.22013 4.29974 4.37913 4.41063 4.52805 4.72045 4.77466 4.85228 4.97415 5.06402 5.10389 5.13183 5.19306 5.25320 5.39538 5.57689 5.61956 5.74751 5.78524 5.88525 6.15715 6.29037 6.48974 6.67096 6.94464 7.11286 8.68961 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.005099 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.327757 B = 5490.363673 C = 7234.733115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 O -0.348 6.348 4 C 0.523 3.477 5 O -0.520 6.520 6 C -0.289 4.289 7 C 0.252 3.748 8 N -0.554 5.554 9 C 0.362 3.638 10 N -0.592 5.592 11 C 0.412 3.588 12 O -0.283 6.283 13 C 0.215 3.785 14 H 0.073 0.927 15 C -0.529 4.529 16 H 0.024 0.976 17 C 0.042 3.958 18 N -0.929 5.929 19 Si 0.917 3.083 20 H -0.253 1.253 21 H -0.280 1.280 22 H -0.219 1.219 23 C -0.078 4.078 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.128 4.128 27 C -0.117 4.117 28 C -0.145 4.145 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.224 0.776 35 H 0.236 0.764 36 H 0.273 0.727 37 H 0.099 0.901 38 H 0.143 0.857 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.229 -1.714 11.742 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 O -0.265 6.265 4 C 0.367 3.633 5 O -0.409 6.409 6 C -0.296 4.296 7 C 0.086 3.914 8 N -0.273 5.273 9 C 0.077 3.923 10 N -0.323 5.323 11 C 0.225 3.775 12 O -0.183 6.183 13 C 0.161 3.839 14 H 0.090 0.910 15 C -0.566 4.566 16 H 0.042 0.958 17 C -0.159 4.159 18 N -0.567 5.567 19 Si 0.739 3.261 20 H -0.178 1.178 21 H -0.205 1.205 22 H -0.142 1.142 23 C -0.079 4.079 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.146 4.146 27 C -0.135 4.135 28 C -0.163 4.163 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.240 0.760 35 H 0.252 0.748 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.160 0.840 39 H 0.176 0.824 40 H 0.171 0.829 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.487 -1.439 11.613 17.114 hybrid contribution 0.540 -0.445 -0.654 0.957 sum -11.948 -1.884 10.960 16.322 Atomic orbital electron populations 1.21818 0.89415 1.04513 1.04112 1.23350 0.97471 0.78731 1.02415 1.86480 1.21601 1.34069 1.84315 1.20422 0.81354 0.88573 0.72914 1.90907 1.61069 1.42777 1.46144 1.20121 0.91314 0.94984 1.23225 1.24078 1.01913 0.84265 0.81113 1.68636 1.13577 1.25304 1.19821 1.25752 0.85145 0.98501 0.82942 1.68463 1.42078 0.99051 1.22718 1.20533 0.88224 0.86710 0.81984 1.86355 1.20080 1.29685 1.82212 1.19472 0.74367 0.94554 0.95505 0.90956 1.20995 1.22468 1.20899 0.92246 0.95797 1.25734 0.94711 0.97995 0.97462 1.70031 1.27321 1.37066 1.22270 0.86211 0.80617 0.78962 0.80309 1.17753 1.20521 1.14190 1.20185 0.97078 0.95381 0.95213 1.20963 1.00028 0.92887 1.00022 1.21411 0.96122 0.99210 0.97281 1.21446 0.96892 0.96963 0.99265 1.21387 0.99938 0.92705 0.99486 1.21083 0.96391 1.00331 0.98471 0.90963 0.88180 0.90624 0.91957 0.91396 0.75974 0.74829 0.91782 0.88323 0.83962 0.82365 0.82939 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 10.29 71.98 0.74 -1.03 16 2 C 0.05 1.14 6.20 71.98 0.45 1.59 16 3 O -0.35 -9.13 9.57 -56.57 -0.54 -9.67 16 4 C 0.52 18.41 7.90 70.23 0.56 18.96 16 5 O -0.52 -22.34 15.11 26.60 0.40 -21.94 16 6 C -0.29 -10.19 5.92 -19.84 -0.12 -10.31 16 7 C 0.25 6.65 10.90 85.03 0.93 7.58 16 8 N -0.55 -15.21 10.42 -199.08 -2.07 -17.29 16 9 C 0.36 11.00 12.27 180.86 2.22 13.22 16 10 N -0.59 -23.93 8.80 -312.01 -2.75 -26.68 16 11 C 0.41 17.87 7.50 85.18 0.64 18.51 16 12 O -0.28 -14.18 7.19 -65.32 -0.47 -14.65 16 13 C 0.22 11.04 1.84 29.10 0.05 11.10 16 14 H 0.07 3.60 3.75 -2.39 -0.01 3.59 16 15 C -0.53 -31.73 9.17 25.60 0.23 -31.49 16 16 H 0.02 1.65 8.06 -2.91 -0.02 1.62 16 17 C 0.04 2.45 5.47 84.65 0.46 2.92 16 18 N -0.93 -58.02 13.96 21.45 0.30 -57.72 16 19 Si 0.92 42.54 25.61 68.60 1.76 44.30 16 20 H -0.25 -10.97 6.43 99.48 0.64 -10.33 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.22 -9.37 6.36 99.48 0.63 -8.74 16 23 C -0.08 -3.69 4.98 -19.87 -0.10 -3.78 16 24 C -0.12 -5.39 9.35 22.27 0.21 -5.18 16 25 C -0.12 -4.29 10.05 22.27 0.22 -4.07 16 26 C -0.13 -3.87 10.05 22.27 0.22 -3.64 16 27 C -0.12 -3.85 10.05 22.27 0.22 -3.62 16 28 C -0.14 -5.96 9.35 22.27 0.21 -5.75 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.22 3.81 7.71 -2.91 -0.02 3.79 16 35 H 0.24 5.10 8.06 -2.91 -0.02 5.07 16 36 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 37 H 0.10 4.81 7.67 -2.91 -0.02 4.79 16 38 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 39 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 40 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 41 H 0.11 4.52 5.79 -2.91 -0.02 4.50 16 Total: -1.00 -79.51 356.04 4.70 -74.81 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.92 Total: 23.87 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 7.15 Total: 4.98 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -4.52 Total: -101.68 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.61 Total: -46.26 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.76 Total: 44.30 kcal Total: -79.51 4.70 -74.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226552738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.003 kcal (2) G-P(sol) polarization free energy of solvation -79.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds