Wall clock time and date at job start Tue Mar 31 2020 16:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47524 * 2 1 4 4 C 1.34702 * 117.00193 * 180.02562 * 3 2 1 5 5 O 1.21458 * 120.00170 * 0.02562 * 4 3 2 6 6 C 1.47818 * 119.99926 * 180.27775 * 4 3 2 7 7 C 1.40026 * 120.12156 * 179.72576 * 6 4 3 8 8 C 1.38403 * 117.97103 * 179.97438 * 7 6 4 9 9 C 1.39364 * 118.04167 * 0.02562 * 8 7 6 10 10 O 1.35508 * 120.02550 * 180.02562 * 9 8 7 11 11 C 1.42895 * 116.99916 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.47259 * 329.99650 * 11 10 9 13 13 C 1.50702 * 109.47701 * 89.99514 * 11 10 9 14 14 H 1.08002 * 119.99101 * 55.95948 * 13 11 10 15 15 C 1.37872 * 120.00050 * 235.96418 * 13 11 10 16 16 N 1.31518 * 119.99303 * 173.58112 * 15 13 11 17 17 Si 1.86792 * 120.00264 * 353.57704 * 15 13 11 18 18 H 1.48511 * 109.46881 * 85.67684 * 17 15 13 19 19 H 1.48503 * 109.47107 * 205.67157 * 17 15 13 20 20 H 1.48490 * 109.47462 * 325.67454 * 17 15 13 21 21 C 1.50700 * 109.47045 * 209.99852 * 11 10 9 22 22 C 1.38235 * 119.99773 * 321.57314 * 21 11 10 23 23 C 1.38233 * 119.99581 * 179.80873 * 22 21 11 24 24 C 1.38238 * 120.00476 * 0.39828 * 23 22 21 25 25 C 1.38240 * 119.99640 * 359.84801 * 24 23 22 26 26 C 1.38229 * 119.99875 * 359.96712 * 25 24 23 27 27 N 1.32693 * 119.94627 * 359.97438 * 9 8 7 28 28 N 1.28360 * 122.20410 * 359.73229 * 27 9 8 29 29 H 1.08999 * 109.46667 * 299.99230 * 1 2 3 30 30 H 1.08994 * 109.47466 * 59.99165 * 1 2 3 31 31 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46785 * 240.00418 * 2 1 3 33 33 H 1.08994 * 109.47466 * 120.00835 * 2 1 3 34 34 H 1.08003 * 121.01476 * 359.95674 * 7 6 4 35 35 H 1.07995 * 120.98352 * 180.02562 * 8 7 6 36 36 H 0.96999 * 119.99376 * 179.97438 * 16 15 13 37 37 H 1.07990 * 120.00397 * 359.97438 * 22 21 11 38 38 H 1.08007 * 120.00051 * 180.22732 * 23 22 21 39 39 H 1.08002 * 120.00345 * 179.83513 * 24 23 22 40 40 H 1.07997 * 119.99573 * 179.97438 * 25 24 23 41 41 H 1.08002 * 119.99869 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3495 1.5453 -0.0005 5 8 4.0894 0.5821 -0.0015 6 6 3.9145 2.9113 0.0056 7 6 5.3023 3.0976 0.0109 8 6 5.7830 4.3955 0.0160 9 6 4.8571 5.4371 0.0162 10 8 5.2834 6.7233 0.0206 11 6 4.2790 7.7397 0.0211 12 1 3.3917 7.3739 -0.4958 13 6 3.9225 8.0932 1.4420 14 1 4.6927 8.4131 2.1282 15 6 2.6133 8.0081 1.8658 16 7 2.3196 8.1935 3.1343 17 14 1.2569 7.6297 0.6386 18 1 1.1347 6.1589 0.4737 19 1 -0.0291 8.1805 1.1367 20 1 1.5867 8.2488 -0.6702 21 6 4.8027 8.9638 -0.6849 22 6 6.1205 9.3468 -0.5186 23 6 6.6019 10.4674 -1.1692 24 6 5.7634 11.2097 -1.9797 25 6 4.4442 10.8296 -2.1419 26 6 3.9638 9.7069 -1.4943 27 7 3.5577 5.1682 0.0110 28 7 3.1079 3.9661 0.0007 29 1 -0.3632 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 5.9771 2.2543 0.0112 35 1 6.8443 4.5953 0.0198 36 1 1.3984 8.1341 3.4325 37 1 6.7746 8.7690 0.1175 38 1 7.6325 10.7645 -1.0423 39 1 6.1388 12.0868 -2.4859 40 1 3.7891 11.4098 -2.7747 41 1 2.9331 9.4101 -1.6207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227133355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:33 Heat of formation + Delta-G solvation = -31.903283 kcal Electronic energy + Delta-G solvation = -27062.492226 eV Core-core repulsion = 23102.015408 eV Total energy + Delta-G solvation = -3960.476818 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.09099 -40.07837 -38.89990 -37.52603 -36.65678 -33.39497 -32.91977 -32.18511 -31.57627 -30.76848 -30.32687 -27.49993 -25.56756 -24.57664 -23.33239 -22.81892 -22.05254 -21.47517 -20.50575 -18.56709 -17.77737 -17.44230 -17.20411 -16.79685 -16.66174 -16.14705 -15.34426 -14.82859 -14.40164 -14.34892 -14.22981 -14.12850 -13.85980 -13.35536 -13.30539 -12.95389 -12.88400 -12.84308 -12.76552 -12.20000 -12.02150 -11.90364 -11.70362 -11.59248 -11.26472 -10.83403 -10.63966 -10.61756 -10.50665 -10.22639 -10.17983 -9.83107 -9.71689 -9.25418 -8.78689 -8.61566 -8.38332 -8.01472 -6.36876 -4.46291 0.67708 0.97484 1.91439 1.95005 2.46087 2.48878 3.26711 3.32625 3.42417 3.54368 3.84853 4.13579 4.30669 4.37048 4.53673 4.77039 4.79865 4.85760 4.99372 5.03077 5.06560 5.11846 5.40058 5.42350 5.44685 5.55950 5.63628 5.64997 5.81863 5.84662 5.91274 6.05958 6.07196 6.22824 6.30069 6.31123 6.53674 6.61198 6.98770 7.02115 7.17072 7.25290 7.55305 7.63532 7.73808 8.17750 8.69394 8.86471 9.22778 10.72121 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.003619 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.404179 B = 7734.424197 C = 8679.499433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.333 6.333 4 C 0.544 3.456 5 O -0.509 6.509 6 C -0.037 4.037 7 C -0.032 4.032 8 C -0.157 4.157 9 C 0.324 3.676 10 O -0.295 6.295 11 C 0.203 3.797 12 H 0.069 0.931 13 C -0.531 4.531 14 H 0.083 0.917 15 C 0.096 3.904 16 N -0.868 5.868 17 Si 0.866 3.134 18 H -0.234 1.234 19 H -0.291 1.291 20 H -0.266 1.266 21 C -0.039 4.039 22 C -0.105 4.105 23 C -0.124 4.124 24 C -0.142 4.142 25 C -0.121 4.121 26 C -0.123 4.123 27 N -0.286 5.286 28 N -0.135 5.135 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.272 0.728 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.726 -8.916 -8.960 12.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.248 6.248 4 C 0.386 3.614 5 O -0.397 6.397 6 C -0.183 4.183 7 C -0.059 4.059 8 C -0.187 4.187 9 C 0.141 3.859 10 O -0.197 6.197 11 C 0.150 3.850 12 H 0.087 0.913 13 C -0.567 4.567 14 H 0.101 0.899 15 C -0.112 4.112 16 N -0.502 5.502 17 Si 0.692 3.308 18 H -0.157 1.157 19 H -0.217 1.217 20 H -0.192 1.192 21 C -0.039 4.039 22 C -0.123 4.123 23 C -0.142 4.142 24 C -0.161 4.161 25 C -0.139 4.139 26 C -0.141 4.141 27 N -0.148 5.148 28 N 0.014 4.986 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.082 0.918 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.574 -8.459 -8.808 12.313 hybrid contribution 0.529 -0.580 -0.213 0.813 sum 2.103 -9.039 -9.021 12.942 Atomic orbital electron populations 1.21804 0.92439 1.02764 1.04014 1.23092 0.95644 0.80038 1.02550 1.86706 1.22906 1.31973 1.83231 1.20277 0.80966 0.87919 0.72193 1.90823 1.60697 1.41365 1.46772 1.21318 0.92225 0.92840 1.11877 1.22035 0.94201 0.97888 0.91787 1.21544 1.01898 0.90233 1.05031 1.21804 0.90708 0.88080 0.85317 1.86350 1.40368 1.10161 1.82794 1.19616 0.86592 0.81080 0.97672 0.91282 1.20997 0.95431 1.47262 0.93001 0.89906 1.25055 0.98837 0.92079 0.95236 1.69898 1.20257 1.45391 1.14702 0.87011 0.80419 0.82359 0.81033 1.15680 1.21708 1.19150 1.19998 0.93573 0.97162 0.93189 1.20946 0.95500 0.96651 0.99230 1.21051 0.99268 0.95839 0.98090 1.20944 0.94239 1.00149 1.00723 1.20961 0.95681 0.96992 1.00278 1.21007 0.99793 0.96090 0.97244 1.73499 1.12318 1.11411 1.17552 1.73249 1.30751 0.93589 1.01017 0.91186 0.91285 0.90288 0.91154 0.91092 0.82056 0.82042 0.91814 0.86064 0.86803 0.86967 0.86708 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.94 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.33 -5.05 10.05 -40.50 -0.41 -5.45 16 4 C 0.54 8.66 7.95 34.65 0.28 8.94 16 5 O -0.51 -8.16 16.17 -19.23 -0.31 -8.47 16 6 C -0.04 -0.63 6.83 -82.86 -0.57 -1.19 16 7 C -0.03 -0.46 9.72 -38.85 -0.38 -0.84 16 8 C -0.16 -2.39 10.14 -39.10 -0.40 -2.79 16 9 C 0.32 6.46 7.53 -16.76 -0.13 6.33 16 10 O -0.29 -6.30 9.02 -18.22 -0.16 -6.47 16 11 C 0.20 4.73 2.02 -29.03 -0.06 4.67 16 12 H 0.07 1.65 3.62 -51.93 -0.19 1.46 16 13 C -0.53 -14.42 9.17 -34.44 -0.32 -14.73 16 14 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 15 C 0.10 2.68 5.47 -17.82 -0.10 2.58 16 16 N -0.87 -25.51 13.96 55.43 0.77 -24.73 16 17 Si 0.87 21.15 25.87 -169.99 -4.40 16.75 16 18 H -0.23 -5.73 6.83 56.52 0.39 -5.35 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.09 5.36 56.52 0.30 -5.79 16 21 C -0.04 -0.82 4.96 -104.62 -0.52 -1.34 16 22 C -0.11 -1.99 9.36 -39.58 -0.37 -2.36 16 23 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 24 C -0.14 -2.18 10.05 -39.58 -0.40 -2.58 16 25 C -0.12 -1.99 10.05 -39.58 -0.40 -2.39 16 26 C -0.12 -2.41 9.67 -39.58 -0.38 -2.79 16 27 N -0.29 -6.26 8.46 30.55 0.26 -6.01 16 28 N -0.13 -2.74 11.30 33.31 0.38 -2.36 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.16 1.79 7.71 -52.48 -0.40 1.38 16 35 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.12 2.24 7.73 -52.49 -0.41 1.83 16 38 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 39 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.12 2.33 6.60 -52.49 -0.35 1.98 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -31.73 358.55 -6.81 -38.53 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.82 Total: 3.73 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -3.52 Total: -10.93 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 1.41 Total: -33.10 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.88 Total: -20.39 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.40 Total: 16.75 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.73 -6.81 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227133355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.628 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds