Wall clock time and date at job start Tue Mar 31 2020 16:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47524 * 2 1 4 4 C 1.34702 * 117.00193 * 180.02562 * 3 2 1 5 5 O 1.21458 * 120.00170 * 0.02562 * 4 3 2 6 6 C 1.47818 * 119.99926 * 180.27775 * 4 3 2 7 7 C 1.40026 * 120.12156 * 179.72576 * 6 4 3 8 8 C 1.38403 * 117.97103 * 179.97438 * 7 6 4 9 9 C 1.39364 * 118.04167 * 0.02562 * 8 7 6 10 10 O 1.35508 * 120.02550 * 180.02562 * 9 8 7 11 11 C 1.42895 * 116.99916 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.47259 * 329.99650 * 11 10 9 13 13 C 1.50702 * 109.47701 * 89.99514 * 11 10 9 14 14 H 1.08002 * 119.99101 * 55.95948 * 13 11 10 15 15 C 1.37872 * 120.00050 * 235.96418 * 13 11 10 16 16 N 1.31518 * 119.99303 * 173.58112 * 15 13 11 17 17 Si 1.86792 * 120.00264 * 353.57704 * 15 13 11 18 18 H 1.48511 * 109.46881 * 85.67684 * 17 15 13 19 19 H 1.48503 * 109.47107 * 205.67157 * 17 15 13 20 20 H 1.48490 * 109.47462 * 325.67454 * 17 15 13 21 21 C 1.50700 * 109.47045 * 209.99852 * 11 10 9 22 22 C 1.38235 * 119.99773 * 321.57314 * 21 11 10 23 23 C 1.38233 * 119.99581 * 179.80873 * 22 21 11 24 24 C 1.38238 * 120.00476 * 0.39828 * 23 22 21 25 25 C 1.38240 * 119.99640 * 359.84801 * 24 23 22 26 26 C 1.38229 * 119.99875 * 359.96712 * 25 24 23 27 27 N 1.32693 * 119.94627 * 359.97438 * 9 8 7 28 28 N 1.28360 * 122.20410 * 359.73229 * 27 9 8 29 29 H 1.08999 * 109.46667 * 299.99230 * 1 2 3 30 30 H 1.08994 * 109.47466 * 59.99165 * 1 2 3 31 31 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46785 * 240.00418 * 2 1 3 33 33 H 1.08994 * 109.47466 * 120.00835 * 2 1 3 34 34 H 1.08003 * 121.01476 * 359.95674 * 7 6 4 35 35 H 1.07995 * 120.98352 * 180.02562 * 8 7 6 36 36 H 0.96999 * 119.99376 * 179.97438 * 16 15 13 37 37 H 1.07990 * 120.00397 * 359.97438 * 22 21 11 38 38 H 1.08007 * 120.00051 * 180.22732 * 23 22 21 39 39 H 1.08002 * 120.00345 * 179.83513 * 24 23 22 40 40 H 1.07997 * 119.99573 * 179.97438 * 25 24 23 41 41 H 1.08002 * 119.99869 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3495 1.5453 -0.0005 5 8 4.0894 0.5821 -0.0015 6 6 3.9145 2.9113 0.0056 7 6 5.3023 3.0976 0.0109 8 6 5.7830 4.3955 0.0160 9 6 4.8571 5.4371 0.0162 10 8 5.2834 6.7233 0.0206 11 6 4.2790 7.7397 0.0211 12 1 3.3917 7.3739 -0.4958 13 6 3.9225 8.0932 1.4420 14 1 4.6927 8.4131 2.1282 15 6 2.6133 8.0081 1.8658 16 7 2.3196 8.1935 3.1343 17 14 1.2569 7.6297 0.6386 18 1 1.1347 6.1589 0.4737 19 1 -0.0291 8.1805 1.1367 20 1 1.5867 8.2488 -0.6702 21 6 4.8027 8.9638 -0.6849 22 6 6.1205 9.3468 -0.5186 23 6 6.6019 10.4674 -1.1692 24 6 5.7634 11.2097 -1.9797 25 6 4.4442 10.8296 -2.1419 26 6 3.9638 9.7069 -1.4943 27 7 3.5577 5.1682 0.0110 28 7 3.1079 3.9661 0.0007 29 1 -0.3632 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 5.9771 2.2543 0.0112 35 1 6.8443 4.5953 0.0198 36 1 1.3984 8.1341 3.4325 37 1 6.7746 8.7690 0.1175 38 1 7.6325 10.7645 -1.0423 39 1 6.1388 12.0868 -2.4859 40 1 3.7891 11.4098 -2.7747 41 1 2.9331 9.4101 -1.6207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227133355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:28 Heat of formation + Delta-G solvation = -52.481085 kcal Electronic energy + Delta-G solvation = -27063.384546 eV Core-core repulsion = 23102.015408 eV Total energy + Delta-G solvation = -3961.369138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 4.70 seconds Orbital eigenvalues (eV) -42.48038 -41.35549 -40.34836 -39.00898 -37.83618 -35.22037 -34.35711 -33.61030 -32.77989 -32.08157 -31.67537 -29.25053 -26.89002 -26.11611 -24.67367 -24.08152 -23.39887 -22.66716 -21.99667 -19.91615 -19.48227 -19.18288 -18.61461 -18.03054 -17.79518 -17.50995 -16.93524 -16.36016 -16.03033 -15.74184 -15.44423 -15.29332 -15.07592 -14.84875 -14.70019 -14.54159 -14.42616 -14.21463 -13.65795 -13.62716 -13.43642 -13.23378 -13.00276 -12.83734 -12.61369 -12.51810 -12.11832 -11.90007 -11.85263 -11.70034 -11.57748 -11.51118 -11.42619 -10.88040 -10.70106 -10.15835 -9.73733 -9.50690 -8.50254 -6.61687 -0.68941 -0.32345 0.52955 0.59036 1.15538 1.27660 1.33837 1.38360 1.51441 1.94268 2.27635 2.45095 2.77556 2.93722 3.04773 3.19724 3.60299 3.75905 3.78784 4.00270 4.03620 4.06723 4.17578 4.23311 4.31422 4.35245 4.38545 4.45275 4.67198 4.76230 4.78634 4.81814 4.90376 4.94181 5.03898 5.13230 5.24099 5.25701 5.31667 5.64934 5.67430 5.78686 5.90602 6.19368 6.26081 6.43440 6.50898 7.11535 7.42491 8.63359 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.003619 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.404179 B = 7734.424197 C = 8679.499433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.350 6.350 4 C 0.547 3.453 5 O -0.508 6.508 6 C -0.033 4.033 7 C -0.017 4.017 8 C -0.135 4.135 9 C 0.291 3.709 10 O -0.299 6.299 11 C 0.217 3.783 12 H 0.059 0.941 13 C -0.533 4.533 14 H 0.041 0.959 15 C 0.052 3.948 16 N -0.919 5.919 17 Si 0.916 3.084 18 H -0.240 1.240 19 H -0.289 1.289 20 H -0.247 1.247 21 C -0.075 4.075 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.130 4.130 25 C -0.119 4.119 26 C -0.145 4.145 27 N -0.326 5.326 28 N -0.172 5.172 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.205 0.795 35 H 0.203 0.797 36 H 0.272 0.728 37 H 0.115 0.885 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.148 0.852 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 -9.474 -11.416 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.266 6.266 4 C 0.389 3.611 5 O -0.396 6.396 6 C -0.181 4.181 7 C -0.043 4.043 8 C -0.164 4.164 9 C 0.107 3.893 10 O -0.202 6.202 11 C 0.163 3.837 12 H 0.077 0.923 13 C -0.569 4.569 14 H 0.059 0.941 15 C -0.151 4.151 16 N -0.557 5.557 17 Si 0.739 3.261 18 H -0.164 1.164 19 H -0.215 1.215 20 H -0.171 1.171 21 C -0.075 4.075 22 C -0.139 4.139 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.136 4.136 26 C -0.163 4.163 27 N -0.186 5.186 28 N -0.022 5.022 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.222 0.778 35 H 0.220 0.780 36 H 0.081 0.919 37 H 0.133 0.867 38 H 0.167 0.833 39 H 0.174 0.826 40 H 0.166 0.834 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.153 -9.029 -11.286 14.793 hybrid contribution 0.186 -0.563 0.481 0.763 sum 3.339 -9.592 -10.805 14.829 Atomic orbital electron populations 1.21853 0.90797 1.04574 1.03402 1.23484 0.96984 0.78189 1.03517 1.86704 1.22393 1.34663 1.82796 1.20076 0.81406 0.87338 0.72272 1.90816 1.60794 1.41080 1.46906 1.21804 0.93602 0.92790 1.09870 1.22483 0.93441 0.98670 0.89719 1.21966 1.03032 0.89058 1.02386 1.22243 0.91506 0.88308 0.87238 1.86247 1.38944 1.10838 1.84141 1.19275 0.87006 0.82262 0.95198 0.92333 1.21092 0.94324 1.46681 0.94810 0.94068 1.25699 1.00831 0.92133 0.96391 1.70007 1.20606 1.48630 1.16436 0.86227 0.77967 0.81748 0.80121 1.16371 1.21540 1.17108 1.19994 0.95214 0.96941 0.95361 1.21036 0.94733 0.98092 1.00006 1.21452 1.01116 0.94343 0.96825 1.21471 0.93378 1.00609 0.99265 1.21361 0.96923 0.95789 0.99556 1.21122 0.99341 0.97552 0.98268 1.73330 1.13803 1.12578 1.18926 1.73150 1.31946 0.93850 1.03205 0.92058 0.91625 0.87210 0.89911 0.90350 0.77826 0.78020 0.91862 0.86718 0.83341 0.82638 0.83429 0.87280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 10.29 71.98 0.74 -1.63 16 2 C 0.05 1.04 6.19 71.98 0.45 1.49 16 3 O -0.35 -10.40 10.05 -56.12 -0.56 -10.97 16 4 C 0.55 16.73 7.95 70.36 0.56 17.29 16 5 O -0.51 -15.11 16.17 19.97 0.32 -14.78 16 6 C -0.03 -1.09 6.83 41.97 0.29 -0.81 16 7 C -0.02 -0.43 9.72 22.74 0.22 -0.21 16 8 C -0.14 -3.86 10.14 22.58 0.23 -3.63 16 9 C 0.29 11.75 7.53 84.83 0.64 12.39 16 10 O -0.30 -13.19 9.02 -88.10 -0.79 -13.98 16 11 C 0.22 10.51 2.02 29.10 0.06 10.57 16 12 H 0.06 2.92 3.62 -2.39 -0.01 2.92 16 13 C -0.53 -30.66 9.17 25.60 0.23 -30.43 16 14 H 0.04 2.64 8.06 -2.91 -0.02 2.61 16 15 C 0.05 3.07 5.47 84.65 0.46 3.53 16 16 N -0.92 -57.23 13.96 21.45 0.30 -56.93 16 17 Si 0.92 45.83 25.87 68.60 1.77 47.61 16 18 H -0.24 -12.17 6.83 99.48 0.68 -11.49 16 19 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 20 H -0.25 -11.39 5.36 99.48 0.53 -10.86 16 21 C -0.07 -3.21 4.96 -19.86 -0.10 -3.31 16 22 C -0.12 -4.54 9.36 22.27 0.21 -4.33 16 23 C -0.12 -3.51 10.05 22.27 0.22 -3.28 16 24 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 25 C -0.12 -3.57 10.05 22.27 0.22 -3.34 16 26 C -0.14 -5.61 9.67 22.27 0.22 -5.39 16 27 N -0.33 -14.74 8.46 -170.00 -1.44 -16.18 16 28 N -0.17 -7.14 11.30 -48.54 -0.55 -7.69 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.20 3.59 7.71 -2.91 -0.02 3.57 16 35 H 0.20 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 37 H 0.11 4.33 7.73 -2.92 -0.02 4.30 16 38 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.11 4.32 6.60 -2.91 -0.02 4.30 16 Total: -1.00 -75.43 358.55 4.79 -70.64 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.86 Total: 16.60 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 4.87 Total: -14.32 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -1.69 Total: -80.80 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -1.04 Total: -39.73 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.77 Total: 47.61 kcal Total: -75.43 4.79 -70.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227133355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.159 kcal (2) G-P(sol) polarization free energy of solvation -75.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.70 seconds