Wall clock time and date at job start Tue Mar 31 2020 15:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.12858 * 2 1 4 4 O 1.43989 * 110.14679 * 238.24819 * 2 1 3 5 5 C 1.44014 * 104.94664 * 212.66242 * 4 2 1 6 6 C 1.50786 * 105.93142 * 28.17498 * 5 4 2 7 7 C 1.38472 * 107.45495 * 342.47534 * 6 5 4 8 8 N 1.32052 * 119.28144 * 179.97438 * 7 6 5 9 9 C 1.32478 * 120.62502 * 0.02562 * 8 7 6 10 10 O 1.35460 * 119.08083 * 180.02562 * 9 8 7 11 11 N 1.32302 * 121.84225 * 359.69829 * 9 8 7 12 12 C 1.32984 * 120.69230 * 0.59008 * 11 9 8 13 13 O 1.35518 * 120.63760 * 179.70426 * 12 11 9 14 14 C 1.42900 * 117.00099 * 359.72321 * 13 12 11 15 15 H 1.08996 * 109.47109 * 330.00138 * 14 13 12 16 16 C 1.50701 * 109.47021 * 89.99598 * 14 13 12 17 17 H 1.07997 * 120.00079 * 55.51667 * 16 14 13 18 18 C 1.37876 * 120.00183 * 235.50937 * 16 14 13 19 19 N 1.31510 * 119.99842 * 173.19239 * 18 16 14 20 20 Si 1.86806 * 119.99920 * 353.19733 * 18 16 14 21 21 H 1.48492 * 109.47074 * 85.16562 * 20 18 16 22 22 H 1.48498 * 109.47009 * 205.16570 * 20 18 16 23 23 H 1.48502 * 109.46938 * 325.16516 * 20 18 16 24 24 C 1.50702 * 109.47116 * 209.99936 * 14 13 12 25 25 C 1.38235 * 119.99766 * 141.33338 * 24 14 13 26 26 C 1.38232 * 119.99796 * 180.02562 * 25 24 14 27 27 C 1.38238 * 119.99990 * 0.02562 * 26 25 24 28 28 C 1.38237 * 119.99819 * 0.25416 * 27 26 25 29 29 C 1.38231 * 119.99652 * 321.34999 * 24 14 13 30 30 H 1.09004 * 109.47003 * 298.31838 * 1 2 3 31 31 H 1.09000 * 109.47053 * 58.31486 * 1 2 3 32 32 H 1.08999 * 109.47402 * 178.31810 * 1 2 3 33 33 H 1.09001 * 110.15764 * 269.05384 * 5 4 2 34 34 H 1.09007 * 110.15866 * 147.28597 * 5 4 2 35 35 H 0.96694 * 113.99987 * 89.99536 * 10 9 8 36 36 H 0.97005 * 120.00024 * 180.02562 * 19 18 16 37 37 H 1.07995 * 119.99902 * 359.97438 * 25 24 14 38 38 H 1.07997 * 119.99972 * 179.97438 * 26 25 24 39 39 H 1.08002 * 119.99987 * 179.97438 * 27 26 25 40 40 H 1.08005 * 119.99617 * 179.72937 * 28 27 26 41 41 H 1.07994 * 120.00725 * 0.02562 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9051 1.0234 0.0000 4 8 2.0259 -0.7114 -1.1495 5 6 3.2535 -1.3211 -0.7078 6 6 3.0947 -1.5443 0.7750 7 6 2.0498 -0.7443 1.2059 8 7 1.7082 -0.7594 2.4814 9 6 2.3549 -1.5293 3.3441 10 8 1.9779 -1.5209 4.6452 11 7 3.3543 -2.3109 2.9693 12 6 3.7542 -2.3406 1.7013 13 8 4.7820 -3.1372 1.3198 14 6 5.4049 -3.9243 2.3369 15 1 5.3342 -3.4050 3.2925 16 6 4.7094 -5.2574 2.4369 17 1 4.6138 -5.8837 1.5622 18 6 4.1951 -5.6778 3.6451 19 7 3.4730 -6.7752 3.7063 20 14 4.5239 -4.6884 5.1952 21 1 3.5188 -3.6015 5.3112 22 1 4.4295 -5.5786 6.3800 23 1 5.8851 -4.0985 5.1264 24 6 6.8552 -4.1392 1.9881 25 6 7.8161 -4.1133 2.9815 26 6 9.1465 -4.3099 2.6615 27 6 9.5159 -4.5318 1.3480 28 6 8.5556 -4.5520 0.3539 29 6 7.2245 -4.3619 0.6747 30 1 -0.3633 0.4875 0.9047 31 1 -0.3633 0.5398 -0.8745 32 1 -0.3634 -1.0272 -0.0302 33 1 4.0943 -0.6544 -0.8994 34 1 3.4046 -2.2731 -1.2168 35 1 1.3002 -2.1754 4.8625 36 1 3.1108 -7.0707 4.5563 37 1 7.5276 -3.9387 4.0074 38 1 9.8973 -4.2892 3.4375 39 1 10.5554 -4.6850 1.0979 40 1 8.8448 -4.7210 -0.6729 41 1 6.4739 -4.3814 -0.1015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227713579.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:52 Heat of formation + Delta-G solvation = -25.136165 kcal Electronic energy + Delta-G solvation = -28180.551320 eV Core-core repulsion = 24220.367947 eV Total energy + Delta-G solvation = -3960.183373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 6.97 seconds Orbital eigenvalues (eV) -41.54664 -39.22736 -38.84749 -37.83441 -36.38711 -33.51103 -32.90231 -31.67799 -31.36146 -30.76077 -30.34538 -27.50438 -25.88966 -24.93780 -23.21442 -22.77699 -22.12462 -21.22851 -20.46244 -18.93334 -18.14084 -17.38586 -17.19988 -16.49172 -16.27856 -16.04626 -15.33501 -14.98461 -14.56932 -14.33402 -14.14162 -14.08798 -13.92856 -13.34148 -13.21523 -12.94824 -12.84946 -12.71810 -12.31711 -12.17785 -11.98117 -11.86271 -11.73048 -11.68638 -11.29328 -11.02857 -10.77858 -10.59213 -10.34766 -10.18686 -9.90940 -9.69969 -9.39931 -8.96806 -8.82897 -8.42675 -8.38177 -8.01294 -6.41113 -4.48940 0.93418 1.42459 1.90611 1.94157 2.96250 3.19711 3.26399 3.36730 3.50440 3.77207 3.86534 4.06135 4.21825 4.37924 4.47121 4.87448 4.93109 5.00993 5.10582 5.26095 5.39238 5.41743 5.43014 5.52810 5.55522 5.59100 5.75373 5.83285 5.86872 6.05603 6.06327 6.09086 6.24270 6.28962 6.52118 6.56704 6.60841 6.96006 6.98063 7.08283 7.15448 7.24490 7.54221 7.55323 7.81067 8.14440 8.27735 8.66782 9.19041 10.68078 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.005246 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.455838 B = 5336.607640 C = 6860.652162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.133 3.867 3 H 0.099 0.901 4 O -0.352 6.352 5 C 0.116 3.884 6 C -0.292 4.292 7 C 0.180 3.820 8 N -0.540 5.540 9 C 0.536 3.464 10 O -0.457 6.457 11 N -0.556 5.556 12 C 0.442 3.558 13 O -0.297 6.297 14 C 0.206 3.794 15 H 0.068 0.932 16 C -0.527 4.527 17 H 0.082 0.918 18 C 0.093 3.907 19 N -0.871 5.871 20 Si 0.877 3.123 21 H -0.244 1.244 22 H -0.293 1.293 23 H -0.267 1.267 24 C -0.039 4.039 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.142 4.142 28 C -0.124 4.124 29 C -0.104 4.104 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.412 0.588 36 H 0.271 0.729 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 10.979 -4.823 12.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.074 3.926 3 H 0.117 0.883 4 O -0.270 6.270 5 C 0.039 3.961 6 C -0.299 4.299 7 C 0.034 3.966 8 N -0.272 5.272 9 C 0.232 3.768 10 O -0.260 6.260 11 N -0.297 5.297 12 C 0.256 3.744 13 O -0.199 6.199 14 C 0.153 3.847 15 H 0.086 0.914 16 C -0.563 4.563 17 H 0.100 0.900 18 C -0.114 4.114 19 N -0.506 5.506 20 Si 0.704 3.296 21 H -0.168 1.168 22 H -0.219 1.219 23 H -0.193 1.193 24 C -0.040 4.040 25 C -0.142 4.142 26 C -0.139 4.139 27 C -0.160 4.160 28 C -0.142 4.142 29 C -0.122 4.122 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.271 0.729 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.666 11.141 -4.097 11.889 hybrid contribution 0.232 -0.446 0.747 0.901 sum 0.897 10.695 -3.349 11.243 Atomic orbital electron populations 1.21805 0.91549 1.03576 1.03094 1.21231 0.96367 0.94695 0.80324 0.88345 1.89164 1.38529 1.68410 1.30938 1.21358 0.87001 0.99294 0.88444 1.21462 1.03504 1.05582 0.99340 1.22010 0.91030 0.92147 0.91392 1.66945 1.32169 1.26174 1.01909 1.19797 0.86269 0.85949 0.84818 1.84659 1.61773 1.61405 1.18173 1.67947 1.19223 1.24747 1.17818 1.18944 0.85620 0.84081 0.85757 1.86365 1.40820 1.51154 1.41584 1.19535 0.86344 0.91505 0.87306 0.91433 1.21009 1.36307 1.00891 0.98047 0.89955 1.25063 0.92398 0.94637 0.99335 1.69915 1.31054 1.22754 1.26860 0.86887 0.80663 0.80554 0.81544 1.16811 1.21934 1.19279 1.20017 0.94358 0.96161 0.93460 1.21006 0.92567 1.01423 0.99223 1.20958 0.95652 1.01031 0.96293 1.20944 0.98787 1.03011 0.93279 1.21056 0.93321 1.01072 0.98754 1.20949 0.95621 0.99341 0.96317 0.90161 0.91173 0.91612 0.90283 0.87761 0.72856 0.91950 0.86393 0.86740 0.86949 0.86760 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.62 37.16 0.36 -1.18 16 2 C 0.13 1.69 3.99 -27.77 -0.11 1.58 16 3 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 4 O -0.35 -4.87 11.41 -35.23 -0.40 -5.28 16 5 C 0.12 1.65 7.63 36.05 0.27 1.92 16 6 C -0.29 -5.13 6.34 -104.28 -0.66 -5.79 16 7 C 0.18 2.94 6.85 -82.29 -0.56 2.37 16 8 N -0.54 -9.51 10.47 -10.92 -0.11 -9.62 16 9 C 0.54 10.30 8.71 -91.13 -0.79 9.51 16 10 O -0.46 -7.77 13.44 -18.07 -0.24 -8.01 16 11 N -0.56 -12.00 7.67 -14.85 -0.11 -12.12 16 12 C 0.44 9.22 7.48 -16.84 -0.13 9.09 16 13 O -0.30 -6.52 9.04 -18.25 -0.16 -6.68 16 14 C 0.21 4.83 2.03 -29.03 -0.06 4.77 16 15 H 0.07 1.63 3.67 -51.93 -0.19 1.44 16 16 C -0.53 -14.23 9.17 -34.44 -0.32 -14.54 16 17 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 18 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 19 N -0.87 -25.14 13.96 55.43 0.77 -24.37 16 20 Si 0.88 20.80 25.97 -169.99 -4.41 16.38 16 21 H -0.24 -5.56 6.68 56.52 0.38 -5.18 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.12 5.32 56.52 0.30 -5.82 16 24 C -0.04 -0.84 4.96 -104.62 -0.52 -1.36 16 25 C -0.12 -2.45 9.67 -39.58 -0.38 -2.83 16 26 C -0.12 -2.01 10.05 -39.58 -0.40 -2.41 16 27 C -0.14 -2.19 10.05 -39.58 -0.40 -2.59 16 28 C -0.12 -2.01 10.05 -39.58 -0.40 -2.41 16 29 C -0.10 -1.99 9.36 -39.58 -0.37 -2.36 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.41 5.16 9.06 45.56 0.41 5.57 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.12 2.34 6.51 -52.49 -0.34 2.00 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.12 2.27 7.74 -52.49 -0.41 1.86 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -31.58 348.85 -8.00 -39.57 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.01 Total: 8.66 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -4.56 Total: -3.79 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.55 Total: -46.11 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.81 Total: -19.97 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.41 Total: 16.38 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.58 -8.00 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227713579.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.437 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.97 seconds