Wall clock time and date at job start Tue Mar 31 2020 15:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.12858 * 2 1 4 4 O 1.43989 * 110.14679 * 238.24819 * 2 1 3 5 5 C 1.44014 * 104.94664 * 212.66242 * 4 2 1 6 6 C 1.50786 * 105.93142 * 28.17498 * 5 4 2 7 7 C 1.38472 * 107.45495 * 342.47534 * 6 5 4 8 8 N 1.32052 * 119.28144 * 179.97438 * 7 6 5 9 9 C 1.32478 * 120.62502 * 0.02562 * 8 7 6 10 10 O 1.35460 * 119.08083 * 180.02562 * 9 8 7 11 11 N 1.32302 * 121.84225 * 359.69829 * 9 8 7 12 12 C 1.32984 * 120.69230 * 0.59008 * 11 9 8 13 13 O 1.35518 * 120.63760 * 179.70426 * 12 11 9 14 14 C 1.42900 * 117.00099 * 359.72321 * 13 12 11 15 15 H 1.08996 * 109.47109 * 330.00138 * 14 13 12 16 16 C 1.50701 * 109.47021 * 89.99598 * 14 13 12 17 17 H 1.07997 * 120.00079 * 55.51667 * 16 14 13 18 18 C 1.37876 * 120.00183 * 235.50937 * 16 14 13 19 19 N 1.31510 * 119.99842 * 173.19239 * 18 16 14 20 20 Si 1.86806 * 119.99920 * 353.19733 * 18 16 14 21 21 H 1.48492 * 109.47074 * 85.16562 * 20 18 16 22 22 H 1.48498 * 109.47009 * 205.16570 * 20 18 16 23 23 H 1.48502 * 109.46938 * 325.16516 * 20 18 16 24 24 C 1.50702 * 109.47116 * 209.99936 * 14 13 12 25 25 C 1.38235 * 119.99766 * 141.33338 * 24 14 13 26 26 C 1.38232 * 119.99796 * 180.02562 * 25 24 14 27 27 C 1.38238 * 119.99990 * 0.02562 * 26 25 24 28 28 C 1.38237 * 119.99819 * 0.25416 * 27 26 25 29 29 C 1.38231 * 119.99652 * 321.34999 * 24 14 13 30 30 H 1.09004 * 109.47003 * 298.31838 * 1 2 3 31 31 H 1.09000 * 109.47053 * 58.31486 * 1 2 3 32 32 H 1.08999 * 109.47402 * 178.31810 * 1 2 3 33 33 H 1.09001 * 110.15764 * 269.05384 * 5 4 2 34 34 H 1.09007 * 110.15866 * 147.28597 * 5 4 2 35 35 H 0.96694 * 113.99987 * 89.99536 * 10 9 8 36 36 H 0.97005 * 120.00024 * 180.02562 * 19 18 16 37 37 H 1.07995 * 119.99902 * 359.97438 * 25 24 14 38 38 H 1.07997 * 119.99972 * 179.97438 * 26 25 24 39 39 H 1.08002 * 119.99987 * 179.97438 * 27 26 25 40 40 H 1.08005 * 119.99617 * 179.72937 * 28 27 26 41 41 H 1.07994 * 120.00725 * 0.02562 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9051 1.0234 0.0000 4 8 2.0259 -0.7114 -1.1495 5 6 3.2535 -1.3211 -0.7078 6 6 3.0947 -1.5443 0.7750 7 6 2.0498 -0.7443 1.2059 8 7 1.7082 -0.7594 2.4814 9 6 2.3549 -1.5293 3.3441 10 8 1.9779 -1.5209 4.6452 11 7 3.3543 -2.3109 2.9693 12 6 3.7542 -2.3406 1.7013 13 8 4.7820 -3.1372 1.3198 14 6 5.4049 -3.9243 2.3369 15 1 5.3342 -3.4050 3.2925 16 6 4.7094 -5.2574 2.4369 17 1 4.6138 -5.8837 1.5622 18 6 4.1951 -5.6778 3.6451 19 7 3.4730 -6.7752 3.7063 20 14 4.5239 -4.6884 5.1952 21 1 3.5188 -3.6015 5.3112 22 1 4.4295 -5.5786 6.3800 23 1 5.8851 -4.0985 5.1264 24 6 6.8552 -4.1392 1.9881 25 6 7.8161 -4.1133 2.9815 26 6 9.1465 -4.3099 2.6615 27 6 9.5159 -4.5318 1.3480 28 6 8.5556 -4.5520 0.3539 29 6 7.2245 -4.3619 0.6747 30 1 -0.3633 0.4875 0.9047 31 1 -0.3633 0.5398 -0.8745 32 1 -0.3634 -1.0272 -0.0302 33 1 4.0943 -0.6544 -0.8994 34 1 3.4046 -2.2731 -1.2168 35 1 1.3002 -2.1754 4.8625 36 1 3.1108 -7.0707 4.5563 37 1 7.5276 -3.9387 4.0074 38 1 9.8973 -4.2892 3.4375 39 1 10.5554 -4.6850 1.0979 40 1 8.8448 -4.7210 -0.6729 41 1 6.4739 -4.3814 -0.1015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227713579.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:49 Heat of formation + Delta-G solvation = -51.145634 kcal Electronic energy + Delta-G solvation = -28181.679175 eV Core-core repulsion = 24220.367947 eV Total energy + Delta-G solvation = -3961.311229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -42.92840 -40.66820 -40.16823 -39.30401 -37.76009 -35.25526 -34.53427 -33.22925 -32.52940 -32.08038 -31.71479 -29.25927 -27.07994 -26.39912 -24.83336 -24.16776 -23.50359 -22.47157 -21.98250 -20.32506 -19.68587 -19.30026 -18.64940 -17.77073 -17.54843 -17.43784 -16.74570 -16.58651 -16.04602 -15.77783 -15.59681 -15.42605 -15.15406 -14.89039 -14.68287 -14.62056 -14.27332 -14.08371 -13.66191 -13.51665 -13.27268 -13.23583 -12.96273 -12.90511 -12.70088 -12.65150 -12.26309 -12.07919 -11.89489 -11.86256 -11.53710 -11.36507 -10.91182 -10.82643 -10.42027 -9.82581 -9.76338 -9.52281 -8.51613 -6.63216 -0.46381 -0.05454 0.50216 0.56079 1.26224 1.33370 1.42458 1.62934 2.00462 2.23271 2.39525 2.62582 2.71077 2.94011 3.01882 3.16809 3.62457 3.71087 4.03126 4.10102 4.12715 4.16976 4.20238 4.24993 4.33651 4.40938 4.45720 4.60955 4.71827 4.76708 4.82084 4.84982 4.95018 5.10427 5.21510 5.22845 5.23827 5.48268 5.58902 5.63412 5.67364 5.76238 5.88569 6.16372 6.22123 6.37571 6.48486 6.79813 7.09290 8.62223 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.005246 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.455838 B = 5336.607640 C = 6860.652162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.134 3.866 3 H 0.132 0.868 4 O -0.354 6.354 5 C 0.120 3.880 6 C -0.298 4.298 7 C 0.180 3.820 8 N -0.533 5.533 9 C 0.526 3.474 10 O -0.459 6.459 11 N -0.589 5.589 12 C 0.412 3.588 13 O -0.302 6.302 14 C 0.220 3.780 15 H 0.058 0.942 16 C -0.531 4.531 17 H 0.037 0.963 18 C 0.049 3.951 19 N -0.920 5.920 20 Si 0.929 3.071 21 H -0.233 1.233 22 H -0.291 1.291 23 H -0.258 1.258 24 C -0.076 4.076 25 C -0.145 4.145 26 C -0.118 4.118 27 C -0.129 4.129 28 C -0.119 4.119 29 C -0.121 4.121 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.428 0.572 36 H 0.273 0.727 37 H 0.108 0.892 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 13.314 -5.749 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.076 3.924 3 H 0.150 0.850 4 O -0.272 6.272 5 C 0.043 3.957 6 C -0.304 4.304 7 C 0.034 3.966 8 N -0.264 5.264 9 C 0.222 3.778 10 O -0.265 6.265 11 N -0.331 5.331 12 C 0.226 3.774 13 O -0.206 6.206 14 C 0.166 3.834 15 H 0.076 0.924 16 C -0.568 4.568 17 H 0.055 0.945 18 C -0.153 4.153 19 N -0.558 5.558 20 Si 0.752 3.248 21 H -0.156 1.156 22 H -0.217 1.217 23 H -0.182 1.182 24 C -0.076 4.076 25 C -0.164 4.164 26 C -0.136 4.136 27 C -0.147 4.147 28 C -0.136 4.136 29 C -0.139 4.139 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.291 0.709 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.166 0.834 39 H 0.175 0.825 40 H 0.167 0.833 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.231 13.493 -5.028 14.571 hybrid contribution -0.242 -1.101 0.889 1.436 sum 1.989 12.391 -4.139 13.215 Atomic orbital electron populations 1.21826 0.89897 1.03129 1.04760 1.21601 0.97593 0.95284 0.77949 0.85038 1.89169 1.38370 1.68583 1.31089 1.21452 0.88086 1.00109 0.86023 1.21840 1.03042 1.04588 1.00897 1.22821 0.90291 0.91675 0.91794 1.67070 1.31492 1.25487 1.02374 1.19984 0.86159 0.86045 0.85644 1.84619 1.62519 1.62124 1.17258 1.67823 1.20473 1.26084 1.18672 1.19296 0.86167 0.85260 0.86650 1.86278 1.41742 1.51794 1.40751 1.19222 0.87534 0.89307 0.87357 0.92431 1.21069 1.37086 1.02129 0.96510 0.94506 1.25750 0.92054 0.95428 1.02104 1.70026 1.33243 1.24868 1.27658 0.86067 0.81319 0.79475 0.77891 1.15606 1.21740 1.18241 1.20019 0.93427 0.99020 0.95143 1.21113 0.94037 1.02785 0.98420 1.21363 0.94742 0.99434 0.98057 1.21475 1.00725 1.00189 0.92276 1.21454 0.91915 0.99312 1.00949 1.21025 0.97270 1.00286 0.95311 0.89402 0.88547 0.93184 0.87631 0.87877 0.70921 0.91803 0.87411 0.83402 0.82539 0.83298 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.62 71.98 0.69 -1.92 16 2 C 0.13 3.04 3.99 29.92 0.12 3.16 16 3 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 4 O -0.35 -8.93 11.41 -148.98 -1.70 -10.63 16 5 C 0.12 3.25 7.63 71.26 0.54 3.79 16 6 C -0.30 -10.38 6.34 -19.64 -0.12 -10.50 16 7 C 0.18 5.66 6.85 42.66 0.29 5.95 16 8 N -0.53 -18.32 10.47 -301.32 -3.15 -21.48 16 9 C 0.53 20.27 8.71 180.53 1.57 21.85 16 10 O -0.46 -15.47 13.44 -87.58 -1.18 -16.65 16 11 N -0.59 -26.03 7.67 -426.43 -3.27 -29.30 16 12 C 0.41 17.65 7.48 84.66 0.63 18.28 16 13 O -0.30 -13.91 9.04 -88.20 -0.80 -14.71 16 14 C 0.22 10.77 2.03 29.10 0.06 10.83 16 15 H 0.06 2.89 3.67 -2.39 -0.01 2.89 16 16 C -0.53 -30.55 9.17 25.60 0.23 -30.32 16 17 H 0.04 2.38 8.06 -2.91 -0.02 2.35 16 18 C 0.05 2.82 5.47 84.66 0.46 3.28 16 19 N -0.92 -56.05 13.96 21.45 0.30 -55.75 16 20 Si 0.93 44.45 25.97 68.60 1.78 46.23 16 21 H -0.23 -10.56 6.68 99.48 0.66 -9.90 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.26 -11.79 5.32 99.48 0.53 -11.26 16 24 C -0.08 -3.31 4.96 -19.87 -0.10 -3.40 16 25 C -0.15 -5.70 9.67 22.27 0.22 -5.49 16 26 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 27 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 28 C -0.12 -3.54 10.05 22.27 0.22 -3.31 16 29 C -0.12 -4.64 9.36 22.27 0.21 -4.43 16 30 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 35 H 0.43 10.63 9.06 -74.06 -0.67 9.96 16 36 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 37 H 0.11 4.32 6.51 -2.91 -0.02 4.30 16 38 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 39 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 41 H 0.11 4.38 7.74 -2.91 -0.02 4.35 16 Total: -1.00 -73.47 348.85 -2.34 -75.80 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.20 Total: 25.32 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.48 Total: 1.16 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -6.12 Total: -106.53 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -3.67 Total: -41.99 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.78 Total: 46.23 kcal Total: -73.47 -2.34 -75.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227713579.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.659 kcal (2) G-P(sol) polarization free energy of solvation -73.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds