Wall clock time and date at job start Tue Mar 31 2020 16:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45202 * 109.47136 * 2 1 4 4 C 1.34230 * 117.00081 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99840 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99844 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.46852 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47375 * 54.99699 * 7 6 4 9 9 C 1.50706 * 109.47430 * 174.99841 * 7 6 4 10 10 H 1.07999 * 120.00193 * 240.00552 * 9 7 6 11 11 C 1.37879 * 119.99398 * 59.99633 * 9 7 6 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 7 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 7 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 O 1.42903 * 109.47584 * 294.99798 * 7 6 4 18 18 C 1.35559 * 117.00363 * 149.99838 * 17 7 6 19 19 N 1.32755 * 120.48548 * 0.02562 * 18 17 7 20 20 C 1.32282 * 120.68535 * 179.97438 * 19 18 17 21 21 O 1.35497 * 119.14105 * 180.02562 * 20 19 18 22 22 C 1.42905 * 116.99966 * 180.02562 * 21 20 19 23 23 C 1.53006 * 109.47091 * 179.97438 * 22 21 20 24 24 N 1.32269 * 121.71577 * 0.02562 * 20 19 18 25 25 C 1.32504 * 120.91972 * 359.97438 * 24 20 19 26 26 C 1.38359 * 119.21898 * 359.74211 * 25 24 20 27 27 F 1.35097 * 120.78355 * 180.25197 * 26 25 24 28 28 H 1.08997 * 109.47071 * 60.00270 * 1 2 3 29 29 H 1.09003 * 109.46763 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47050 * 300.00066 * 1 2 3 31 31 H 1.09001 * 109.47050 * 239.99934 * 2 1 3 32 32 H 1.08997 * 109.47131 * 120.00515 * 2 1 3 33 33 H 1.09002 * 109.47489 * 59.99869 * 6 4 3 34 34 H 1.08998 * 109.46839 * 299.99682 * 6 4 3 35 35 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 36 36 H 1.08994 * 109.47332 * 300.00465 * 22 21 20 37 37 H 1.08998 * 109.47177 * 60.00346 * 22 21 20 38 38 H 1.08998 * 109.46825 * 60.00134 * 23 22 21 39 39 H 1.08999 * 109.46681 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47190 * 300.00034 * 23 22 21 41 41 H 1.08001 * 120.38941 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9374 0.0012 7 6 5.4486 2.8574 0.0010 8 1 5.7806 2.2500 -0.8410 9 6 6.0244 4.2446 -0.1222 10 1 6.6591 4.4934 -0.9599 11 6 5.7407 5.1962 0.8344 12 7 6.2428 6.4069 0.7266 13 14 4.6433 4.7658 2.2835 14 1 3.2286 5.0525 1.9354 15 1 4.7914 3.3236 2.6052 16 1 5.0378 5.5788 3.4618 17 8 5.8946 2.2633 1.2218 18 6 7.0506 1.5566 1.1761 19 7 7.7215 1.4358 0.0369 20 6 8.8501 0.7476 -0.0121 21 8 9.5096 0.6449 -1.1913 22 6 10.7234 -0.1094 -1.1923 23 6 11.3200 -0.1139 -2.6012 24 7 9.3516 0.1571 1.0599 25 6 8.7362 0.2352 2.2308 26 6 7.5558 0.9505 2.3270 27 9 6.9048 1.0549 3.5062 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5844 3.4694 0.8912 34 1 3.5851 3.4698 -0.8888 35 1 6.0429 7.0765 1.3994 36 1 11.4324 0.3422 -0.4985 37 1 10.5149 -1.1336 -0.8832 38 1 11.5284 0.9103 -2.9107 39 1 12.2460 -0.6888 -2.6018 40 1 10.6108 -0.5658 -3.2946 41 1 9.1535 -0.2500 3.1008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228367408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:30 Heat of formation + Delta-G solvation = -141.076741 kcal Electronic energy + Delta-G solvation = -28971.810178 eV Core-core repulsion = 24575.830019 eV Total energy + Delta-G solvation = -4395.980159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.131 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -48.37372 -40.84588 -40.13027 -38.65782 -37.50275 -36.20480 -33.60100 -32.83315 -31.91305 -31.65886 -30.98868 -29.56664 -26.56463 -24.56059 -23.87827 -23.27840 -22.41161 -21.72357 -20.42927 -19.12542 -18.18182 -17.45015 -17.41065 -16.92015 -16.54461 -16.37770 -16.05224 -15.73807 -15.39090 -14.88959 -14.67678 -14.18281 -13.97161 -13.68040 -13.64643 -13.34029 -12.99413 -12.87641 -12.77590 -12.75376 -12.59942 -12.21282 -12.01997 -11.70695 -11.57376 -11.54082 -11.43701 -11.02222 -10.80116 -10.72261 -10.48411 -10.36969 -10.25900 -9.87222 -9.25368 -9.12943 -8.86725 -8.81351 -8.03923 -6.37472 -4.48769 1.23732 1.52460 2.63382 2.67321 2.97840 3.11838 3.23592 3.37703 3.68731 4.06296 4.22092 4.25187 4.51070 4.86947 4.93254 4.96331 5.00169 5.00635 5.03854 5.12605 5.19214 5.28226 5.36020 5.49721 5.66531 5.69197 5.73644 5.77739 5.81412 5.86171 5.93265 6.01153 6.22201 6.49995 6.65336 6.76193 7.05967 7.23191 7.35603 7.84194 8.15019 8.23992 8.42040 8.71994 9.23366 10.72445 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.004927 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.715778 B = 5681.806644 C = 6779.864940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.364 6.364 4 C 0.458 3.542 5 O -0.505 6.505 6 C -0.112 4.112 7 C 0.184 3.816 8 H 0.082 0.918 9 C -0.535 4.535 10 H 0.091 0.909 11 C 0.089 3.911 12 N -0.870 5.870 13 Si 0.855 3.145 14 H -0.273 1.273 15 H -0.226 1.226 16 H -0.286 1.286 17 O -0.282 6.282 18 C 0.419 3.581 19 N -0.540 5.540 20 C 0.528 3.472 21 O -0.286 6.286 22 C 0.072 3.928 23 C -0.153 4.153 24 N -0.587 5.587 25 C 0.175 3.825 26 C -0.081 4.081 27 F -0.124 7.124 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.271 0.729 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 -13.290 -0.536 13.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.282 6.282 4 C 0.301 3.699 5 O -0.392 6.392 6 C -0.149 4.149 7 C 0.130 3.870 8 H 0.100 0.900 9 C -0.571 4.571 10 H 0.109 0.891 11 C -0.119 4.119 12 N -0.505 5.505 13 Si 0.683 3.317 14 H -0.200 1.200 15 H -0.151 1.151 16 H -0.213 1.213 17 O -0.183 6.183 18 C 0.229 3.771 19 N -0.282 5.282 20 C 0.225 3.775 21 O -0.188 6.188 22 C -0.004 4.004 23 C -0.210 4.210 24 N -0.322 5.322 25 C 0.013 3.987 26 C -0.107 4.107 27 F -0.103 7.103 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.132 -13.294 -1.393 13.367 hybrid contribution -0.980 -0.042 1.779 2.032 sum -1.112 -13.336 0.386 13.388 Atomic orbital electron populations 1.21791 0.92988 1.02567 1.03454 1.22938 0.95082 0.81171 1.02338 1.86557 1.25479 1.31628 1.84512 1.24425 0.79952 0.93666 0.71835 1.90627 1.60243 1.43215 1.45070 1.22277 0.96888 0.89543 1.06207 1.20453 0.87604 0.95242 0.83697 0.89966 1.21174 1.32613 0.91520 1.11796 0.89127 1.25112 0.94813 0.94527 0.97402 1.69894 1.42223 1.03335 1.35018 0.87401 0.80295 0.81330 0.82643 1.19970 1.15056 1.21314 1.86787 1.31837 1.59397 1.40315 1.19899 0.86640 0.84241 0.86329 1.67282 1.09291 1.23797 1.27816 1.20217 0.86077 0.86536 0.84638 1.86101 1.37428 1.69459 1.25768 1.22685 0.83364 0.95603 0.98775 1.21824 1.00683 1.03462 0.95042 1.68046 1.36364 1.28467 0.99340 1.22637 0.88481 0.92186 0.95381 1.18371 0.98340 1.11419 0.82591 1.91477 1.80493 1.95258 1.43040 0.91525 0.90594 0.91568 0.91487 0.91561 0.88623 0.85409 0.91945 0.91265 0.91407 0.91373 0.90227 0.91542 0.80307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.10 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.36 -6.22 10.22 -39.26 -0.40 -6.62 16 4 C 0.46 9.09 7.84 36.00 0.28 9.37 16 5 O -0.50 -11.05 15.17 -24.06 -0.36 -11.41 16 6 C -0.11 -2.34 4.97 -27.89 -0.14 -2.48 16 7 C 0.18 4.40 1.58 -27.88 -0.04 4.35 16 8 H 0.08 2.01 6.83 -51.93 -0.35 1.66 16 9 C -0.53 -14.49 9.51 -34.44 -0.33 -14.82 16 10 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 11 C 0.09 2.44 5.45 -17.82 -0.10 2.34 16 12 N -0.87 -25.27 13.96 55.43 0.77 -24.49 16 13 Si 0.86 20.57 23.86 -169.99 -4.06 16.52 16 14 H -0.27 -6.15 6.91 56.52 0.39 -5.76 16 15 H -0.23 -5.45 5.30 56.52 0.30 -5.15 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 O -0.28 -6.89 5.76 -32.84 -0.19 -7.08 16 18 C 0.42 9.62 7.49 -16.66 -0.12 9.49 16 19 N -0.54 -12.29 8.83 -14.75 -0.13 -12.42 16 20 C 0.53 10.46 8.49 -91.33 -0.78 9.69 16 21 O -0.29 -5.10 10.20 -18.18 -0.19 -5.29 16 22 C 0.07 0.91 6.01 37.16 0.22 1.13 16 23 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 24 N -0.59 -10.15 9.22 -14.76 -0.14 -10.29 16 25 C 0.18 2.83 11.28 -17.22 -0.19 2.63 16 26 C -0.08 -1.60 7.39 -39.05 -0.29 -1.89 16 27 F -0.12 -2.44 17.18 2.25 0.04 -2.40 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 32 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.10 2.06 3.42 -51.93 -0.18 1.88 16 34 H 0.13 2.36 8.14 -51.93 -0.42 1.94 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 37 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.18 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -32.58 354.59 -5.07 -37.64 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.27 Total: 1.85 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: -0.49 Total: 18.65 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.51 Total: -47.20 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.14 Total: -30.40 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.06 Total: 16.52 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.58 -5.07 -37.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228367408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.434 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds