Wall clock time and date at job start Tue Mar 31 2020 16:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45202 * 109.47136 * 2 1 4 4 C 1.34230 * 117.00081 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99840 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99844 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.46852 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47375 * 54.99699 * 7 6 4 9 9 C 1.50706 * 109.47430 * 174.99841 * 7 6 4 10 10 H 1.07999 * 120.00193 * 240.00552 * 9 7 6 11 11 C 1.37879 * 119.99398 * 59.99633 * 9 7 6 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 7 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 7 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 O 1.42903 * 109.47584 * 294.99798 * 7 6 4 18 18 C 1.35559 * 117.00363 * 149.99838 * 17 7 6 19 19 N 1.32755 * 120.48548 * 0.02562 * 18 17 7 20 20 C 1.32282 * 120.68535 * 179.97438 * 19 18 17 21 21 O 1.35497 * 119.14105 * 180.02562 * 20 19 18 22 22 C 1.42905 * 116.99966 * 180.02562 * 21 20 19 23 23 C 1.53006 * 109.47091 * 179.97438 * 22 21 20 24 24 N 1.32269 * 121.71577 * 0.02562 * 20 19 18 25 25 C 1.32504 * 120.91972 * 359.97438 * 24 20 19 26 26 C 1.38359 * 119.21898 * 359.74211 * 25 24 20 27 27 F 1.35097 * 120.78355 * 180.25197 * 26 25 24 28 28 H 1.08997 * 109.47071 * 60.00270 * 1 2 3 29 29 H 1.09003 * 109.46763 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47050 * 300.00066 * 1 2 3 31 31 H 1.09001 * 109.47050 * 239.99934 * 2 1 3 32 32 H 1.08997 * 109.47131 * 120.00515 * 2 1 3 33 33 H 1.09002 * 109.47489 * 59.99869 * 6 4 3 34 34 H 1.08998 * 109.46839 * 299.99682 * 6 4 3 35 35 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 36 36 H 1.08994 * 109.47332 * 300.00465 * 22 21 20 37 37 H 1.08998 * 109.47177 * 60.00346 * 22 21 20 38 38 H 1.08998 * 109.46825 * 60.00134 * 23 22 21 39 39 H 1.08999 * 109.46681 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47190 * 300.00034 * 23 22 21 41 41 H 1.08001 * 120.38941 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9374 0.0012 7 6 5.4486 2.8574 0.0010 8 1 5.7806 2.2500 -0.8410 9 6 6.0244 4.2446 -0.1222 10 1 6.6591 4.4934 -0.9599 11 6 5.7407 5.1962 0.8344 12 7 6.2428 6.4069 0.7266 13 14 4.6433 4.7658 2.2835 14 1 3.2286 5.0525 1.9354 15 1 4.7914 3.3236 2.6052 16 1 5.0378 5.5788 3.4618 17 8 5.8946 2.2633 1.2218 18 6 7.0506 1.5566 1.1761 19 7 7.7215 1.4358 0.0369 20 6 8.8501 0.7476 -0.0121 21 8 9.5096 0.6449 -1.1913 22 6 10.7234 -0.1094 -1.1923 23 6 11.3200 -0.1139 -2.6012 24 7 9.3516 0.1571 1.0599 25 6 8.7362 0.2352 2.2308 26 6 7.5558 0.9505 2.3270 27 9 6.9048 1.0549 3.5062 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5844 3.4694 0.8912 34 1 3.5851 3.4698 -0.8888 35 1 6.0429 7.0765 1.3994 36 1 11.4324 0.3422 -0.4985 37 1 10.5149 -1.1336 -0.8832 38 1 11.5284 0.9103 -2.9107 39 1 12.2460 -0.6888 -2.6018 40 1 10.6108 -0.5658 -3.2946 41 1 9.1535 -0.2500 3.1008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228367408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:29 Heat of formation + Delta-G solvation = -165.945747 kcal Electronic energy + Delta-G solvation = -28972.888579 eV Core-core repulsion = 24575.830019 eV Total energy + Delta-G solvation = -4397.058560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.131 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -49.89080 -42.37434 -41.64141 -40.20589 -38.99587 -37.67202 -35.46064 -34.46053 -33.48296 -32.73428 -32.32342 -30.99866 -28.41743 -26.10687 -25.27209 -24.54158 -23.64325 -23.26837 -21.99435 -20.67983 -19.79791 -19.03183 -18.96182 -18.49848 -18.02633 -17.81930 -17.57266 -17.41303 -16.86896 -16.47524 -16.16148 -15.62285 -15.51177 -15.13343 -15.07504 -14.87851 -14.61167 -14.38176 -14.25364 -13.78235 -13.60385 -13.48639 -13.24708 -13.12251 -12.94286 -12.84889 -12.64422 -12.52882 -12.51231 -12.38581 -12.10864 -11.81526 -11.56942 -11.48248 -11.19879 -10.93246 -10.80971 -10.39620 -9.60857 -8.49859 -6.66177 -0.24153 -0.03625 1.06450 1.19572 1.24623 1.40073 1.49275 1.60760 2.00374 2.23177 2.52335 2.80397 2.95115 3.00923 3.45809 3.69849 3.74884 3.95824 3.99715 4.06255 4.08477 4.12131 4.15129 4.17821 4.31206 4.43845 4.61285 4.76818 4.79074 4.86262 4.90345 4.94587 5.02061 5.09777 5.20222 5.22773 5.38866 5.55967 5.87611 6.03598 6.24337 6.48428 6.66739 6.89745 7.10161 8.64319 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.004927 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.715778 B = 5681.806644 C = 6779.864940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 O -0.361 6.361 4 C 0.467 3.533 5 O -0.529 6.529 6 C -0.112 4.112 7 C 0.196 3.804 8 H 0.066 0.934 9 C -0.540 4.540 10 H 0.046 0.954 11 C 0.047 3.953 12 N -0.915 5.915 13 Si 0.910 3.090 14 H -0.243 1.243 15 H -0.228 1.228 16 H -0.290 1.290 17 O -0.296 6.296 18 C 0.385 3.615 19 N -0.577 5.577 20 C 0.520 3.480 21 O -0.305 6.305 22 C 0.062 3.938 23 C -0.147 4.147 24 N -0.568 5.568 25 C 0.204 3.796 26 C -0.096 4.096 27 F -0.124 7.124 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.147 0.853 35 H 0.274 0.726 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.024 -15.642 0.658 15.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.278 6.278 4 C 0.311 3.689 5 O -0.418 6.418 6 C -0.149 4.149 7 C 0.142 3.858 8 H 0.084 0.916 9 C -0.576 4.576 10 H 0.064 0.936 11 C -0.156 4.156 12 N -0.552 5.552 13 Si 0.735 3.265 14 H -0.168 1.168 15 H -0.152 1.152 16 H -0.217 1.217 17 O -0.199 6.199 18 C 0.196 3.804 19 N -0.320 5.320 20 C 0.218 3.782 21 O -0.207 6.207 22 C -0.013 4.013 23 C -0.204 4.204 24 N -0.303 5.303 25 C 0.041 3.959 26 C -0.122 4.122 27 F -0.103 7.103 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.165 0.835 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.132 0.868 40 H 0.083 0.917 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -0.634 -15.665 -0.236 15.679 hybrid contribution -0.661 0.525 1.312 1.560 sum -1.295 -15.140 1.076 15.234 Atomic orbital electron populations 1.21826 0.89792 1.04552 1.03835 1.23361 0.97518 0.79182 1.02452 1.86529 1.23431 1.34042 1.83783 1.23971 0.80852 0.92661 0.71395 1.90620 1.61099 1.43770 1.46359 1.22100 0.94776 0.90891 1.07124 1.20111 0.89382 0.92840 0.83506 0.91552 1.21143 1.32243 0.93632 1.10616 0.93567 1.25770 0.96005 0.94084 0.99720 1.70003 1.44272 1.04537 1.36429 0.86524 0.80120 0.80722 0.79129 1.16809 1.15188 1.21704 1.86684 1.33042 1.60472 1.39692 1.20309 0.86695 0.85600 0.87777 1.67147 1.10910 1.25332 1.28626 1.20463 0.85652 0.86254 0.85836 1.86117 1.39064 1.70171 1.25320 1.23122 0.81643 0.95601 1.00897 1.21876 1.01830 1.03644 0.93064 1.68240 1.35540 1.27367 0.99128 1.23546 0.86363 0.89640 0.96318 1.18588 0.99556 1.12357 0.81697 1.91468 1.80748 1.95393 1.42725 0.90994 0.87769 0.91326 0.91224 0.91748 0.88654 0.83487 0.91626 0.90657 0.90229 0.92104 0.86818 0.91720 0.74603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 10.29 71.98 0.74 -1.66 16 2 C 0.05 1.21 6.19 71.98 0.45 1.66 16 3 O -0.36 -11.80 10.22 -51.41 -0.53 -12.32 16 4 C 0.47 18.32 7.84 71.24 0.56 18.88 16 5 O -0.53 -23.27 15.17 27.05 0.41 -22.86 16 6 C -0.11 -4.67 4.97 29.85 0.15 -4.52 16 7 C 0.20 9.69 1.58 29.85 0.05 9.74 16 8 H 0.07 3.43 6.83 -2.39 -0.02 3.41 16 9 C -0.54 -30.69 9.51 25.60 0.24 -30.45 16 10 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 11 C 0.05 2.67 5.45 84.66 0.46 3.13 16 12 N -0.92 -55.05 13.96 21.45 0.30 -54.75 16 13 Si 0.91 42.78 23.86 68.60 1.64 44.42 16 14 H -0.24 -10.19 6.91 99.48 0.69 -9.50 16 15 H -0.23 -10.72 5.30 99.48 0.53 -10.19 16 16 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 17 O -0.30 -14.75 5.76 -74.82 -0.43 -15.18 16 18 C 0.38 17.96 7.49 84.87 0.64 18.60 16 19 N -0.58 -27.08 8.83 -426.19 -3.76 -30.84 16 20 C 0.52 20.60 8.49 180.59 1.53 22.13 16 21 O -0.30 -10.91 10.20 -87.98 -0.90 -11.81 16 22 C 0.06 1.49 6.01 71.98 0.43 1.92 16 23 C -0.15 -2.63 10.28 71.98 0.74 -1.89 16 24 N -0.57 -18.52 9.22 -313.56 -2.89 -21.41 16 25 C 0.20 6.02 11.28 84.62 0.95 6.97 16 26 C -0.10 -3.71 7.39 22.62 0.17 -3.54 16 27 F -0.12 -4.73 17.18 44.97 0.77 -3.96 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 32 H 0.06 1.66 8.13 -2.39 -0.02 1.64 16 33 H 0.10 4.00 3.42 -2.39 -0.01 3.99 16 34 H 0.15 5.42 8.14 -2.39 -0.02 5.40 16 35 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 36 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 37 H 0.08 1.72 8.09 -2.39 -0.02 1.70 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.24 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -74.87 354.59 2.58 -72.28 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.87 Total: 15.46 kcal Atomic # 6 Polarization: 33.87 SS G_CDS: 7.11 Total: 40.97 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -6.36 Total: -107.01 kcal Atomic # 8 Polarization: -60.73 SS G_CDS: -1.44 Total: -62.17 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.77 Total: -3.96 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.64 Total: 44.42 kcal Total: -74.87 2.58 -72.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228367408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.664 kcal (2) G-P(sol) polarization free energy of solvation -74.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds