Wall clock time and date at job start Tue Mar 31 2020 16:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.47393 * 2 1 4 4 C 1.34738 * 117.00204 * 179.97438 * 3 2 1 5 5 O 1.21501 * 119.99977 * 0.02562 * 4 3 2 6 6 C 1.47484 * 119.99944 * 180.02562 * 4 3 2 7 7 C 1.40122 * 120.88956 * 180.02562 * 6 4 3 8 8 N 1.31999 * 118.98612 * 179.97438 * 7 6 4 9 9 C 1.32475 * 120.91728 * 0.02562 * 8 7 6 10 10 O 1.35288 * 119.01351 * 180.02562 * 9 8 7 11 11 C 1.42905 * 116.99856 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.47055 * 30.00143 * 11 10 9 13 13 C 1.50692 * 109.47090 * 269.99845 * 11 10 9 14 14 H 1.08004 * 120.00056 * 304.74608 * 13 11 10 15 15 C 1.37880 * 120.00045 * 124.75318 * 13 11 10 16 16 N 1.31509 * 119.99752 * 185.62750 * 15 13 11 17 17 Si 1.86797 * 119.99916 * 5.62847 * 15 13 11 18 18 H 1.48498 * 109.47001 * 275.14023 * 17 15 13 19 19 H 1.48503 * 109.47038 * 35.13914 * 17 15 13 20 20 H 1.48499 * 109.47287 * 155.14038 * 17 15 13 21 21 C 1.50697 * 109.46681 * 149.99692 * 11 10 9 22 22 C 1.38237 * 120.00298 * 38.69198 * 21 11 10 23 23 C 1.38236 * 120.00315 * 179.80777 * 22 21 11 24 24 C 1.38235 * 119.99705 * 0.39958 * 23 22 21 25 25 C 1.38236 * 120.00212 * 359.84913 * 24 23 22 26 26 C 1.38234 * 120.00024 * 218.96223 * 21 11 10 27 27 N 1.32483 * 121.97708 * 0.27083 * 9 8 7 28 28 C 1.32006 * 120.91155 * 359.44419 * 27 9 8 29 29 H 1.09001 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47309 * 300.00026 * 1 2 3 31 31 H 1.09002 * 109.46843 * 60.00061 * 1 2 3 32 32 H 1.09002 * 109.47309 * 239.99974 * 2 1 3 33 33 H 1.09002 * 109.46843 * 119.99939 * 2 1 3 34 34 H 1.07997 * 120.50526 * 359.95225 * 7 6 4 35 35 H 0.97005 * 120.00104 * 179.97438 * 16 15 13 36 36 H 1.08004 * 119.99957 * 359.97438 * 22 21 11 37 37 H 1.07998 * 120.00421 * 180.22878 * 23 22 21 38 38 H 1.08003 * 120.00196 * 179.83641 * 24 23 22 39 39 H 1.07997 * 119.99944 * 179.97438 * 25 24 23 40 40 H 1.07995 * 120.00029 * 359.97438 * 26 21 11 41 41 H 1.08008 * 120.50362 * 180.27068 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3498 1.5455 0.0005 5 8 4.0899 0.5819 0.0005 6 6 3.9135 2.9083 0.0011 7 6 5.2996 3.1135 0.0012 8 7 5.7634 4.3493 0.0012 9 6 4.9384 5.3859 0.0017 10 8 5.4555 6.6360 0.0012 11 6 4.5269 7.7222 0.0012 12 1 3.6145 7.4202 0.5155 13 6 4.2000 8.1036 -1.4195 14 1 4.9936 8.3577 -2.1067 15 6 2.8878 8.1284 -1.8422 16 7 2.6088 8.3526 -3.1076 17 14 1.5065 7.8436 -0.6174 18 1 1.2811 6.3847 -0.4560 19 1 1.8774 8.4351 0.6933 20 1 0.2631 8.4845 -1.1157 21 6 5.1360 8.9037 0.7112 22 6 6.4771 9.1944 0.5442 23 6 7.0349 10.2805 1.1923 24 6 6.2535 11.0711 2.0139 25 6 4.9135 10.7775 2.1851 26 6 4.3549 9.6936 1.5339 27 7 3.6222 5.2350 0.0075 28 6 3.0774 4.0327 0.0021 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.9782 2.2733 0.0015 35 1 1.6857 8.3697 -3.4051 36 1 7.0885 8.5744 -0.0948 37 1 8.0818 10.5097 1.0589 38 1 6.6898 11.9182 2.5224 39 1 4.3032 11.3950 2.8273 40 1 3.3081 9.4643 1.6675 41 1 2.0035 3.9174 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229850128.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:39 Heat of formation + Delta-G solvation = -38.745062 kcal Electronic energy + Delta-G solvation = -27063.091297 eV Core-core repulsion = 23102.317798 eV Total energy + Delta-G solvation = -3960.773500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 3.87 seconds Orbital eigenvalues (eV) -41.10249 -40.07473 -38.86642 -37.39963 -36.59394 -33.73446 -33.16046 -32.22300 -31.56420 -30.79034 -30.31760 -27.52310 -25.23286 -24.43695 -23.46965 -22.85468 -22.05499 -21.35091 -20.40881 -18.31371 -18.16310 -17.48277 -17.23815 -16.67707 -16.65899 -16.15119 -15.41091 -15.02550 -14.76895 -14.37992 -14.17673 -13.96829 -13.91002 -13.48198 -13.16867 -13.00911 -12.93670 -12.80371 -12.70378 -12.17778 -12.00109 -11.92638 -11.71046 -11.56304 -11.24282 -10.96261 -10.75143 -10.68801 -10.59455 -10.37281 -10.16144 -9.89610 -9.67100 -8.92952 -8.81128 -8.62625 -8.36640 -8.02780 -6.42106 -4.50139 0.67195 1.31365 1.91576 1.96657 2.51915 2.58911 3.09796 3.19798 3.23845 3.29863 4.05358 4.19433 4.30162 4.40554 4.59435 4.66001 4.72409 4.79086 4.89395 5.03825 5.04459 5.07059 5.41219 5.44910 5.47965 5.55581 5.58650 5.75380 5.80951 5.81979 6.06807 6.09882 6.27698 6.28485 6.30742 6.53779 6.63139 6.97347 6.99485 7.03540 7.16519 7.28498 7.56449 7.66844 7.74028 8.11580 8.41664 8.67852 9.17245 10.67181 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003584 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.862710 B = 7810.022021 C = 8766.368182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.355 6.355 4 C 0.534 3.466 5 O -0.515 6.515 6 C -0.311 4.311 7 C 0.257 3.743 8 N -0.540 5.540 9 C 0.556 3.444 10 O -0.283 6.283 11 C 0.209 3.791 12 H 0.071 0.929 13 C -0.526 4.526 14 H 0.084 0.916 15 C 0.093 3.907 16 N -0.867 5.867 17 Si 0.883 3.117 18 H -0.251 1.251 19 H -0.265 1.265 20 H -0.291 1.291 21 C -0.040 4.040 22 C -0.102 4.102 23 C -0.124 4.124 24 C -0.141 4.141 25 C -0.122 4.122 26 C -0.123 4.123 27 N -0.559 5.559 28 C 0.251 3.749 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.182 0.818 35 H 0.272 0.728 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.289 -9.411 8.927 13.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.272 6.272 4 C 0.379 3.621 5 O -0.405 6.405 6 C -0.319 4.319 7 C 0.088 3.912 8 N -0.266 5.266 9 C 0.259 3.741 10 O -0.182 6.182 11 C 0.155 3.845 12 H 0.089 0.911 13 C -0.562 4.562 14 H 0.102 0.898 15 C -0.115 4.115 16 N -0.502 5.502 17 Si 0.709 3.291 18 H -0.175 1.175 19 H -0.191 1.191 20 H -0.218 1.218 21 C -0.040 4.040 22 C -0.120 4.120 23 C -0.142 4.142 24 C -0.159 4.159 25 C -0.140 4.140 26 C -0.141 4.141 27 N -0.288 5.288 28 C 0.082 3.918 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.199 0.801 35 H 0.082 0.918 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.545 -8.439 8.779 12.275 hybrid contribution -1.344 -0.930 0.216 1.649 sum -2.889 -9.370 8.995 13.306 Atomic orbital electron populations 1.21820 0.92588 1.02922 1.03766 1.23024 0.95319 0.79931 1.02655 1.86547 1.23827 1.32477 1.84396 1.20498 0.80460 0.88929 0.72179 1.90818 1.60340 1.42230 1.47135 1.20508 0.96767 0.92364 1.22242 1.23220 0.91580 0.93513 0.82933 1.67874 1.38891 0.97992 1.21879 1.21204 0.83913 0.87518 0.81435 1.86241 1.40218 1.09805 1.81919 1.19636 0.87864 0.79278 0.97684 0.91122 1.21045 0.94525 1.47505 0.93101 0.89821 1.25085 0.98877 0.92321 0.95213 1.69902 1.20366 1.45129 1.14819 0.86792 0.80614 0.80474 0.81190 1.17516 1.19081 1.21818 1.19955 0.93711 0.97027 0.93349 1.20992 0.94920 0.96999 0.99128 1.21063 0.99394 0.95737 0.97979 1.20949 0.94329 1.00135 1.00532 1.20949 0.95240 0.97486 1.00331 1.20975 0.99819 0.96167 0.97178 1.68350 1.12907 1.26343 1.21195 1.23368 1.00841 0.85373 0.82239 0.90256 0.91389 0.91291 0.91109 0.91171 0.80075 0.91825 0.85914 0.86723 0.86938 0.86707 0.86349 0.80641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.61 6.20 37.16 0.23 0.84 16 3 O -0.36 -4.45 9.56 -40.59 -0.39 -4.84 16 4 C 0.53 7.61 7.90 34.50 0.27 7.88 16 5 O -0.52 -8.00 16.23 -19.27 -0.31 -8.31 16 6 C -0.31 -4.77 5.90 -104.72 -0.62 -5.39 16 7 C 0.26 4.02 10.87 -16.77 -0.18 3.84 16 8 N -0.54 -10.29 10.45 -14.38 -0.15 -10.44 16 9 C 0.56 11.87 8.44 -90.97 -0.77 11.10 16 10 O -0.28 -6.55 9.10 -17.56 -0.16 -6.71 16 11 C 0.21 4.91 2.00 -29.04 -0.06 4.85 16 12 H 0.07 1.66 3.58 -51.93 -0.19 1.47 16 13 C -0.53 -14.25 9.17 -34.44 -0.32 -14.57 16 14 H 0.08 2.52 8.06 -52.48 -0.42 2.09 16 15 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 16 N -0.87 -24.95 13.96 55.43 0.77 -24.17 16 17 Si 0.88 20.28 25.83 -169.99 -4.39 15.88 16 18 H -0.25 -5.42 6.81 56.52 0.38 -5.03 16 19 H -0.27 -5.78 5.37 56.52 0.30 -5.47 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 C -0.04 -0.86 4.96 -104.63 -0.52 -1.38 16 22 C -0.10 -2.02 9.36 -39.58 -0.37 -2.39 16 23 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 24 C -0.14 -2.21 10.05 -39.58 -0.40 -2.60 16 25 C -0.12 -2.02 10.05 -39.58 -0.40 -2.42 16 26 C -0.12 -2.41 9.67 -39.58 -0.38 -2.79 16 27 N -0.56 -11.43 7.20 -14.37 -0.10 -11.54 16 28 C 0.25 4.18 10.90 -16.77 -0.18 4.00 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.18 2.29 7.74 -52.49 -0.41 1.89 16 35 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.12 2.44 7.74 -52.48 -0.41 2.03 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.12 2.28 6.59 -52.49 -0.35 1.93 16 41 H 0.18 2.47 7.71 -52.48 -0.40 2.07 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -31.10 357.47 -7.95 -39.06 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.80 Total: 5.44 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -3.80 Total: 0.24 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.52 Total: -46.15 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.86 Total: -19.86 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.39 Total: 15.88 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.10 -7.95 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229850128.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.311 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.87 seconds