Wall clock time and date at job start Tue Mar 31 2020 16:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.47393 * 2 1 4 4 C 1.34738 * 117.00204 * 179.97438 * 3 2 1 5 5 O 1.21501 * 119.99977 * 0.02562 * 4 3 2 6 6 C 1.47484 * 119.99944 * 180.02562 * 4 3 2 7 7 C 1.40122 * 120.88956 * 180.02562 * 6 4 3 8 8 N 1.31999 * 118.98612 * 179.97438 * 7 6 4 9 9 C 1.32475 * 120.91728 * 0.02562 * 8 7 6 10 10 O 1.35288 * 119.01351 * 180.02562 * 9 8 7 11 11 C 1.42905 * 116.99856 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.47055 * 30.00143 * 11 10 9 13 13 C 1.50692 * 109.47090 * 269.99845 * 11 10 9 14 14 H 1.08004 * 120.00056 * 304.74608 * 13 11 10 15 15 C 1.37880 * 120.00045 * 124.75318 * 13 11 10 16 16 N 1.31509 * 119.99752 * 185.62750 * 15 13 11 17 17 Si 1.86797 * 119.99916 * 5.62847 * 15 13 11 18 18 H 1.48498 * 109.47001 * 275.14023 * 17 15 13 19 19 H 1.48503 * 109.47038 * 35.13914 * 17 15 13 20 20 H 1.48499 * 109.47287 * 155.14038 * 17 15 13 21 21 C 1.50697 * 109.46681 * 149.99692 * 11 10 9 22 22 C 1.38237 * 120.00298 * 38.69198 * 21 11 10 23 23 C 1.38236 * 120.00315 * 179.80777 * 22 21 11 24 24 C 1.38235 * 119.99705 * 0.39958 * 23 22 21 25 25 C 1.38236 * 120.00212 * 359.84913 * 24 23 22 26 26 C 1.38234 * 120.00024 * 218.96223 * 21 11 10 27 27 N 1.32483 * 121.97708 * 0.27083 * 9 8 7 28 28 C 1.32006 * 120.91155 * 359.44419 * 27 9 8 29 29 H 1.09001 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47309 * 300.00026 * 1 2 3 31 31 H 1.09002 * 109.46843 * 60.00061 * 1 2 3 32 32 H 1.09002 * 109.47309 * 239.99974 * 2 1 3 33 33 H 1.09002 * 109.46843 * 119.99939 * 2 1 3 34 34 H 1.07997 * 120.50526 * 359.95225 * 7 6 4 35 35 H 0.97005 * 120.00104 * 179.97438 * 16 15 13 36 36 H 1.08004 * 119.99957 * 359.97438 * 22 21 11 37 37 H 1.07998 * 120.00421 * 180.22878 * 23 22 21 38 38 H 1.08003 * 120.00196 * 179.83641 * 24 23 22 39 39 H 1.07997 * 119.99944 * 179.97438 * 25 24 23 40 40 H 1.07995 * 120.00029 * 359.97438 * 26 21 11 41 41 H 1.08008 * 120.50362 * 180.27068 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3498 1.5455 0.0005 5 8 4.0899 0.5819 0.0005 6 6 3.9135 2.9083 0.0011 7 6 5.2996 3.1135 0.0012 8 7 5.7634 4.3493 0.0012 9 6 4.9384 5.3859 0.0017 10 8 5.4555 6.6360 0.0012 11 6 4.5269 7.7222 0.0012 12 1 3.6145 7.4202 0.5155 13 6 4.2000 8.1036 -1.4195 14 1 4.9936 8.3577 -2.1067 15 6 2.8878 8.1284 -1.8422 16 7 2.6088 8.3526 -3.1076 17 14 1.5065 7.8436 -0.6174 18 1 1.2811 6.3847 -0.4560 19 1 1.8774 8.4351 0.6933 20 1 0.2631 8.4845 -1.1157 21 6 5.1360 8.9037 0.7112 22 6 6.4771 9.1944 0.5442 23 6 7.0349 10.2805 1.1923 24 6 6.2535 11.0711 2.0139 25 6 4.9135 10.7775 2.1851 26 6 4.3549 9.6936 1.5339 27 7 3.6222 5.2350 0.0075 28 6 3.0774 4.0327 0.0021 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.9782 2.2733 0.0015 35 1 1.6857 8.3697 -3.4051 36 1 7.0885 8.5744 -0.0948 37 1 8.0818 10.5097 1.0589 38 1 6.6898 11.9182 2.5224 39 1 4.3032 11.3950 2.8273 40 1 3.3081 9.4643 1.6675 41 1 2.0035 3.9174 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229850128.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:36 Heat of formation + Delta-G solvation = -58.946819 kcal Electronic energy + Delta-G solvation = -27063.967311 eV Core-core repulsion = 23102.317798 eV Total energy + Delta-G solvation = -3961.649513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.49841 -41.28255 -40.32905 -38.92541 -37.68812 -35.28252 -34.96826 -33.49233 -32.83614 -32.00746 -31.69562 -29.27149 -26.61853 -25.83075 -24.91757 -23.97508 -23.43129 -22.50100 -21.91310 -19.76150 -19.61014 -19.35065 -18.63793 -17.83246 -17.66265 -17.52305 -17.00992 -16.54298 -16.21033 -15.99230 -15.41076 -15.16545 -15.00900 -14.83476 -14.73360 -14.55971 -14.39497 -14.19864 -13.59627 -13.50300 -13.44248 -13.07286 -12.94300 -12.79521 -12.63155 -12.48008 -12.23038 -12.07742 -11.89300 -11.66593 -11.58542 -11.52065 -11.43072 -10.86334 -10.32490 -10.13661 -9.75623 -9.53494 -8.48190 -6.62522 -0.69848 -0.04105 0.49990 0.56987 1.31603 1.34958 1.39623 1.45288 1.46770 1.65953 2.28143 2.62976 2.82054 2.98362 3.03609 3.32236 3.48496 3.59645 3.85073 4.04192 4.05573 4.09950 4.17190 4.24863 4.34798 4.38648 4.41269 4.57417 4.73274 4.77426 4.82510 4.93989 4.96027 5.11299 5.11900 5.22379 5.23461 5.37602 5.53283 5.62589 5.65646 5.80890 5.96414 6.17840 6.26571 6.47658 6.57585 6.91633 7.11345 8.65835 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003584 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.862710 B = 7810.022021 C = 8766.368182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.356 6.356 4 C 0.543 3.457 5 O -0.526 6.526 6 C -0.295 4.295 7 C 0.258 3.742 8 N -0.554 5.554 9 C 0.533 3.467 10 O -0.301 6.301 11 C 0.223 3.777 12 H 0.071 0.929 13 C -0.536 4.536 14 H 0.030 0.970 15 C 0.046 3.954 16 N -0.921 5.921 17 Si 0.935 3.065 18 H -0.229 1.229 19 H -0.248 1.248 20 H -0.289 1.289 21 C -0.077 4.077 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.128 4.128 25 C -0.117 4.117 26 C -0.140 4.140 27 N -0.585 5.585 28 C 0.247 3.753 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.214 0.786 35 H 0.274 0.726 36 H 0.104 0.896 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.153 0.847 40 H 0.117 0.883 41 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.215 -10.030 11.692 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.273 6.273 4 C 0.388 3.612 5 O -0.417 6.417 6 C -0.302 4.302 7 C 0.091 3.909 8 N -0.281 5.281 9 C 0.235 3.765 10 O -0.201 6.201 11 C 0.169 3.831 12 H 0.089 0.911 13 C -0.573 4.573 14 H 0.049 0.951 15 C -0.157 4.157 16 N -0.558 5.558 17 Si 0.757 3.243 18 H -0.152 1.152 19 H -0.172 1.172 20 H -0.216 1.216 21 C -0.077 4.077 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.146 4.146 25 C -0.134 4.134 26 C -0.158 4.158 27 N -0.314 5.314 28 C 0.080 3.920 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.230 0.770 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.163 0.837 38 H 0.175 0.825 39 H 0.170 0.830 40 H 0.135 0.865 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.477 -9.108 11.555 14.921 hybrid contribution -0.945 -0.883 -0.615 1.432 sum -3.423 -9.991 10.941 15.207 Atomic orbital electron populations 1.21853 0.90560 1.04494 1.03685 1.23386 0.96882 0.78324 1.03167 1.86541 1.22418 1.34590 1.83753 1.20162 0.81139 0.87964 0.71949 1.90821 1.60861 1.42342 1.47637 1.20625 0.96569 0.92952 1.20016 1.23752 0.92563 0.92969 0.81622 1.67866 1.39060 0.98658 1.22496 1.21325 0.84745 0.87304 0.83173 1.86125 1.40027 1.10831 1.83106 1.19371 0.88303 0.79942 0.95447 0.91104 1.21071 0.93486 1.48047 0.94669 0.95118 1.25896 1.01235 0.91726 0.96833 1.70032 1.20999 1.47753 1.17002 0.85969 0.77099 0.81796 0.79438 1.15231 1.17236 1.21591 1.20020 0.94994 0.97201 0.95532 1.21018 0.94533 0.98554 1.00189 1.21427 1.01116 0.94358 0.97001 1.21477 0.93797 1.00343 0.98993 1.21398 0.96173 0.96355 0.99503 1.21133 0.99739 0.97241 0.97726 1.68282 1.12594 1.28286 1.22274 1.23828 1.02160 0.84599 0.81450 0.87859 0.91201 0.91610 0.90876 0.90449 0.76965 0.91651 0.87754 0.83676 0.82498 0.82954 0.86518 0.77986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.29 71.98 0.74 -0.95 16 2 C 0.06 0.91 6.20 71.98 0.45 1.36 16 3 O -0.36 -8.06 9.56 -56.48 -0.54 -8.60 16 4 C 0.54 14.29 7.90 70.26 0.56 14.85 16 5 O -0.53 -15.13 16.23 19.83 0.32 -14.81 16 6 C -0.29 -8.60 5.90 -19.93 -0.12 -8.71 16 7 C 0.26 7.85 10.87 85.13 0.93 8.77 16 8 N -0.55 -21.41 10.45 -312.36 -3.26 -24.67 16 9 C 0.53 23.43 8.44 180.47 1.52 24.95 16 10 O -0.30 -14.74 9.10 -85.74 -0.78 -15.52 16 11 C 0.22 11.01 2.00 29.10 0.06 11.07 16 12 H 0.07 3.41 3.58 -2.39 -0.01 3.40 16 13 C -0.54 -31.05 9.17 25.60 0.23 -30.82 16 14 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 15 C 0.05 2.59 5.47 84.66 0.46 3.05 16 16 N -0.92 -55.81 13.96 21.45 0.30 -55.51 16 17 Si 0.93 42.21 25.83 68.60 1.77 43.98 16 18 H -0.23 -9.42 6.81 99.48 0.68 -8.74 16 19 H -0.25 -10.39 5.37 99.48 0.53 -9.86 16 20 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 21 C -0.08 -3.42 4.96 -19.87 -0.10 -3.51 16 22 C -0.12 -5.08 9.36 22.27 0.21 -4.88 16 23 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 24 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 25 C -0.12 -3.50 10.05 22.27 0.22 -3.28 16 26 C -0.14 -5.39 9.67 22.27 0.22 -5.17 16 27 N -0.58 -24.05 7.20 -312.35 -2.25 -26.29 16 28 C 0.25 7.94 10.90 85.12 0.93 8.87 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.21 4.97 7.74 -2.91 -0.02 4.95 16 35 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 36 H 0.10 4.48 7.74 -2.91 -0.02 4.46 16 37 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 38 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 39 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 40 H 0.12 4.40 6.59 -2.91 -0.02 4.38 16 41 H 0.20 5.24 7.71 -2.91 -0.02 5.21 16 Total: -1.00 -73.14 357.47 3.18 -69.97 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.86 Total: 22.78 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 6.75 Total: 8.68 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -5.21 Total: -106.48 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -1.00 Total: -38.92 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.77 Total: 43.98 kcal Total: -73.14 3.18 -69.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229850128.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.022 kcal (2) G-P(sol) polarization free energy of solvation -73.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds