Wall clock time and date at job start Tue Mar 31 2020 16:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47358 * 2 1 4 4 C 1.34229 * 117.00163 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99982 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99965 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.47004 * 180.02562 * 6 4 3 8 8 H 1.09007 * 109.46955 * 54.51716 * 7 6 4 9 9 C 1.50705 * 109.47206 * 174.51530 * 7 6 4 10 10 H 1.07997 * 120.00013 * 95.00798 * 9 7 6 11 11 C 1.37873 * 119.99877 * 275.01382 * 9 7 6 12 12 N 1.31509 * 120.00369 * 5.13328 * 11 9 7 13 13 Si 1.86809 * 119.99879 * 185.14017 * 11 9 7 14 14 H 1.48494 * 109.47213 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.46915 * 299.99666 * 13 11 9 16 16 H 1.48494 * 109.47173 * 59.99545 * 13 11 9 17 17 O 1.42897 * 109.47322 * 294.51669 * 7 6 4 18 18 C 1.35861 * 117.00001 * 155.33151 * 17 7 6 19 19 C 1.39429 * 119.74313 * 185.27284 * 18 17 7 20 20 C 1.36339 * 120.55301 * 179.75714 * 19 18 17 21 21 C 1.40157 * 119.90272 * 0.52039 * 20 19 18 22 22 C 1.41597 * 133.27134 * 179.71845 * 21 20 19 23 23 C 1.35968 * 107.75232 * 180.02562 * 22 21 20 24 24 C 1.43195 * 125.43547 * 179.97438 * 23 22 21 25 25 N 9.43762 * 162.96657 * 35.54444 * 5 1 2 26 26 N 1.38228 * 109.12252 * 359.97438 * 23 22 21 27 27 H 0.97003 * 125.62031 * 180.02562 * 26 23 22 28 28 C 1.37632 * 108.75508 * 0.02562 * 26 23 22 29 29 C 1.38236 * 119.74292 * 5.55046 * 18 17 7 30 30 H 1.08997 * 109.46933 * 300.00064 * 1 2 3 31 31 H 1.09003 * 109.47028 * 59.99326 * 1 2 3 32 32 H 1.09000 * 109.47546 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47052 * 240.00285 * 2 1 3 34 34 H 1.09003 * 109.47028 * 120.00674 * 2 1 3 35 35 H 1.09000 * 109.47473 * 60.00774 * 6 4 3 36 36 H 1.09002 * 109.47305 * 299.99907 * 6 4 3 37 37 H 0.97003 * 119.99986 * 355.01544 * 12 11 9 38 38 H 1.07998 * 119.72502 * 0.02593 * 19 18 17 39 39 H 1.08000 * 120.05315 * 180.27893 * 20 19 18 40 40 H 1.07994 * 126.12471 * 359.97438 * 22 21 20 41 41 H 1.07999 * 120.11586 * 359.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 6 5.4487 2.8572 0.0010 8 1 5.7803 2.2428 -0.8361 9 6 6.0245 4.2434 -0.1341 10 1 6.3109 4.7974 0.7475 11 6 6.1854 4.8042 -1.3834 12 7 5.7444 4.1728 -2.4494 13 14 7.0300 6.4608 -1.5617 14 1 7.0775 6.8403 -2.9966 15 1 6.2715 7.4874 -0.8026 16 1 8.4127 6.3716 -1.0277 17 8 5.8952 2.2734 1.2265 18 6 7.1075 1.6603 1.2119 19 6 7.5506 0.9766 2.3435 20 6 8.7621 0.3513 2.3453 21 6 9.5768 0.4029 1.2060 22 6 10.8553 -0.1244 0.9023 23 6 11.1629 0.2412 -0.3707 24 6 12.3726 -0.0918 -1.0608 25 7 13.3327 -0.3548 -1.6074 26 7 10.1215 0.9856 -0.8922 27 1 10.0904 1.3667 -1.7837 28 6 9.1358 1.0968 0.0620 29 6 7.8947 1.7240 0.0774 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 3.5847 3.4692 0.8912 36 1 3.5852 3.4698 -0.8888 37 1 5.3714 3.2813 -2.3654 38 1 6.9270 0.9384 3.2244 39 1 9.0953 -0.1798 3.2247 40 1 11.4755 -0.7111 1.5637 41 1 7.5469 2.2588 -0.7941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233995338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:19 Heat of formation + Delta-G solvation = -45.738824 kcal Electronic energy + Delta-G solvation = -27142.258363 eV Core-core repulsion = 23181.181591 eV Total energy + Delta-G solvation = -3961.076772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21462 -40.04618 -38.66754 -36.72044 -36.22149 -35.36691 -33.63496 -31.79708 -31.63443 -30.43898 -29.27766 -28.06167 -26.04564 -23.88856 -23.25326 -22.02616 -21.76723 -20.84465 -20.12523 -18.72558 -18.00382 -17.51042 -16.76098 -16.33270 -15.92733 -15.67657 -15.36673 -14.81137 -14.48573 -14.14153 -14.05444 -13.91666 -13.66747 -13.44223 -13.33689 -13.11927 -12.96599 -12.78162 -12.67294 -12.48693 -12.05811 -11.94796 -11.64243 -11.43920 -11.41241 -11.36133 -11.06971 -10.78582 -10.51735 -10.30342 -10.28322 -9.94268 -9.88391 -9.40402 -8.83150 -8.68612 -7.81464 -7.08125 -6.72915 -4.54589 1.02424 2.01569 2.27954 2.41379 2.76880 3.07819 3.23623 3.27425 3.30657 3.47675 3.49701 4.04813 4.14082 4.26813 4.35188 4.95704 4.97461 5.01996 5.03254 5.22263 5.26905 5.33181 5.53430 5.65730 5.71223 5.77812 5.79432 5.86738 5.94569 5.98797 6.02901 6.11806 6.30085 6.44687 6.62061 6.70803 6.78967 6.86116 6.94156 7.10462 7.30361 7.32919 7.55082 7.60125 7.97410 8.27527 8.40188 8.43008 9.19427 10.60269 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.009299 B = 0.004098 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.384151 B = 6831.226209 C = 8739.308387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.456 3.544 5 O -0.506 6.506 6 C -0.102 4.102 7 C 0.209 3.791 8 H 0.048 0.952 9 C -0.617 4.617 10 H 0.067 0.933 11 C 0.032 3.968 12 N -0.896 5.896 13 Si 1.068 2.932 14 H -0.280 1.280 15 H -0.283 1.283 16 H -0.284 1.284 17 O -0.311 6.311 18 C 0.208 3.792 19 C -0.170 4.170 20 C -0.036 4.036 21 C -0.167 4.167 22 C -0.092 4.092 23 C 0.087 3.913 24 C 0.283 3.717 25 N -0.416 5.416 26 N -0.575 5.575 27 H 0.421 0.579 28 C 0.168 3.832 29 C -0.224 4.224 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.269 0.731 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.151 0.849 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 -6.573 6.331 9.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.299 3.701 5 O -0.393 6.393 6 C -0.140 4.140 7 C 0.154 3.846 8 H 0.065 0.935 9 C -0.654 4.654 10 H 0.085 0.915 11 C -0.175 4.175 12 N -0.531 5.531 13 Si 0.894 3.106 14 H -0.205 1.205 15 H -0.209 1.209 16 H -0.210 1.210 17 O -0.222 6.222 18 C 0.158 3.842 19 C -0.189 4.189 20 C -0.055 4.055 21 C -0.171 4.171 22 C -0.122 4.122 23 C -0.022 4.022 24 C -0.032 4.032 25 N -0.093 5.093 26 N -0.180 5.180 27 H 0.259 0.741 28 C 0.057 3.943 29 C -0.246 4.246 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.134 0.866 37 H 0.081 0.919 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.168 0.832 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.236 -6.060 4.366 7.473 hybrid contribution -0.860 -0.937 0.545 1.384 sum -1.096 -6.998 4.912 8.619 Atomic orbital electron populations 1.21785 0.93129 1.02491 1.03366 1.22901 0.94972 0.81423 1.02221 1.86565 1.25836 1.31402 1.84610 1.24668 0.79752 0.94009 0.71630 1.90624 1.60204 1.43339 1.45173 1.22060 0.97251 0.88884 1.05809 1.20111 0.88042 0.94366 0.82095 0.93465 1.22277 1.46292 1.00667 0.96173 0.91486 1.25931 0.94797 1.05147 0.91604 1.70891 1.36815 1.13859 1.31498 0.83533 0.76394 0.74198 0.76428 1.20544 1.20872 1.20991 1.85903 1.30667 1.67036 1.38639 1.18523 0.84896 0.88615 0.92128 1.20024 0.97817 1.03039 0.98062 1.20013 0.92295 0.97189 0.95987 1.17918 0.96526 1.07156 0.95467 1.20721 0.95984 1.02282 0.93209 1.15074 0.86762 1.06642 0.93682 1.24487 0.92036 0.93464 0.93199 1.81259 1.11115 1.09790 1.07123 1.41723 1.14182 1.46916 1.15145 0.74086 1.17961 0.90116 0.98050 0.88139 1.20254 0.93676 1.08986 1.01724 0.91624 0.91602 0.90680 0.91668 0.91617 0.87944 0.86570 0.91910 0.85548 0.85525 0.83178 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.11 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.37 -6.22 10.22 -39.25 -0.40 -6.62 16 4 C 0.46 8.94 7.84 36.00 0.28 9.23 16 5 O -0.51 -11.04 15.18 -23.94 -0.36 -11.41 16 6 C -0.10 -2.07 5.40 -27.88 -0.15 -2.22 16 7 C 0.21 4.75 0.80 -27.88 -0.02 4.72 16 8 H 0.05 1.17 4.89 -51.92 -0.25 0.92 16 9 C -0.62 -15.08 7.69 -34.44 -0.26 -15.34 16 10 H 0.07 1.69 7.82 -52.49 -0.41 1.28 16 11 C 0.03 0.78 5.45 -17.82 -0.10 0.68 16 12 N -0.90 -23.38 13.63 55.43 0.76 -22.63 16 13 Si 1.07 22.53 29.91 -169.99 -5.08 17.44 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 17 O -0.31 -6.87 9.05 -33.26 -0.30 -7.17 16 18 C 0.21 4.23 6.60 -39.14 -0.26 3.97 16 19 C -0.17 -2.87 9.90 -39.82 -0.39 -3.26 16 20 C -0.04 -0.52 10.05 -39.55 -0.40 -0.92 16 21 C -0.17 -2.57 6.16 -106.90 -0.66 -3.23 16 22 C -0.09 -1.18 10.76 -39.12 -0.42 -1.60 16 23 C 0.09 1.18 6.87 -83.87 -0.58 0.60 16 24 C 0.28 3.83 15.86 -22.49 -0.36 3.47 16 25 N -0.42 -6.21 18.54 41.82 0.78 -5.43 16 26 N -0.57 -8.51 6.20 -8.36 -0.05 -8.57 16 27 H 0.42 5.53 8.96 -40.82 -0.37 5.16 16 28 C 0.17 2.92 7.25 -83.95 -0.61 2.31 16 29 C -0.22 -4.54 8.71 -39.27 -0.34 -4.88 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 34 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 35 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 36 H 0.12 2.40 7.90 -51.93 -0.41 1.99 16 37 H 0.27 7.02 6.44 -40.82 -0.26 6.76 16 38 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.14 3.23 5.63 -52.49 -0.30 2.94 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -28.88 364.50 -7.43 -36.31 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -4.60 Total: 9.11 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -3.65 Total: -6.54 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 1.48 Total: -36.63 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -1.07 Total: -25.20 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.08 Total: 17.44 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.88 -7.43 -36.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233995338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.429 kcal (2) G-P(sol) polarization free energy of solvation -28.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds