Wall clock time and date at job start Tue Mar 31 2020 16:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47358 * 2 1 4 4 C 1.34229 * 117.00163 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99982 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99965 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.47004 * 180.02562 * 6 4 3 8 8 H 1.09007 * 109.46955 * 54.51716 * 7 6 4 9 9 C 1.50705 * 109.47206 * 174.51530 * 7 6 4 10 10 H 1.07997 * 120.00013 * 95.00798 * 9 7 6 11 11 C 1.37873 * 119.99877 * 275.01382 * 9 7 6 12 12 N 1.31509 * 120.00369 * 5.13328 * 11 9 7 13 13 Si 1.86809 * 119.99879 * 185.14017 * 11 9 7 14 14 H 1.48494 * 109.47213 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.46915 * 299.99666 * 13 11 9 16 16 H 1.48494 * 109.47173 * 59.99545 * 13 11 9 17 17 O 1.42897 * 109.47322 * 294.51669 * 7 6 4 18 18 C 1.35861 * 117.00001 * 155.33151 * 17 7 6 19 19 C 1.39429 * 119.74313 * 185.27284 * 18 17 7 20 20 C 1.36339 * 120.55301 * 179.75714 * 19 18 17 21 21 C 1.40157 * 119.90272 * 0.52039 * 20 19 18 22 22 C 1.41597 * 133.27134 * 179.71845 * 21 20 19 23 23 C 1.35968 * 107.75232 * 180.02562 * 22 21 20 24 24 C 1.43195 * 125.43547 * 179.97438 * 23 22 21 25 25 N 9.43762 * 162.96657 * 35.54444 * 5 1 2 26 26 N 1.38228 * 109.12252 * 359.97438 * 23 22 21 27 27 H 0.97003 * 125.62031 * 180.02562 * 26 23 22 28 28 C 1.37632 * 108.75508 * 0.02562 * 26 23 22 29 29 C 1.38236 * 119.74292 * 5.55046 * 18 17 7 30 30 H 1.08997 * 109.46933 * 300.00064 * 1 2 3 31 31 H 1.09003 * 109.47028 * 59.99326 * 1 2 3 32 32 H 1.09000 * 109.47546 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47052 * 240.00285 * 2 1 3 34 34 H 1.09003 * 109.47028 * 120.00674 * 2 1 3 35 35 H 1.09000 * 109.47473 * 60.00774 * 6 4 3 36 36 H 1.09002 * 109.47305 * 299.99907 * 6 4 3 37 37 H 0.97003 * 119.99986 * 355.01544 * 12 11 9 38 38 H 1.07998 * 119.72502 * 0.02593 * 19 18 17 39 39 H 1.08000 * 120.05315 * 180.27893 * 20 19 18 40 40 H 1.07994 * 126.12471 * 359.97438 * 22 21 20 41 41 H 1.07999 * 120.11586 * 359.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 6 5.4487 2.8572 0.0010 8 1 5.7803 2.2428 -0.8361 9 6 6.0245 4.2434 -0.1341 10 1 6.3109 4.7974 0.7475 11 6 6.1854 4.8042 -1.3834 12 7 5.7444 4.1728 -2.4494 13 14 7.0300 6.4608 -1.5617 14 1 7.0775 6.8403 -2.9966 15 1 6.2715 7.4874 -0.8026 16 1 8.4127 6.3716 -1.0277 17 8 5.8952 2.2734 1.2265 18 6 7.1075 1.6603 1.2119 19 6 7.5506 0.9766 2.3435 20 6 8.7621 0.3513 2.3453 21 6 9.5768 0.4029 1.2060 22 6 10.8553 -0.1244 0.9023 23 6 11.1629 0.2412 -0.3707 24 6 12.3726 -0.0918 -1.0608 25 7 13.3327 -0.3548 -1.6074 26 7 10.1215 0.9856 -0.8922 27 1 10.0904 1.3667 -1.7837 28 6 9.1358 1.0968 0.0620 29 6 7.8947 1.7240 0.0774 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 3.5847 3.4692 0.8912 36 1 3.5852 3.4698 -0.8888 37 1 5.3714 3.2813 -2.3654 38 1 6.9270 0.9384 3.2244 39 1 9.0953 -0.1798 3.2247 40 1 11.4755 -0.7111 1.5637 41 1 7.5469 2.2588 -0.7941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233995338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:18 Heat of formation + Delta-G solvation = -60.427351 kcal Electronic energy + Delta-G solvation = -27142.895305 eV Core-core repulsion = 23181.181591 eV Total energy + Delta-G solvation = -3961.713714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -42.45604 -41.57857 -40.18278 -37.97726 -37.61831 -36.76077 -35.41345 -33.08100 -32.81839 -31.96329 -30.55080 -29.36890 -27.81476 -25.39907 -24.44938 -23.41820 -23.07534 -22.13122 -21.60709 -20.07883 -19.51890 -19.09432 -18.37480 -17.71611 -17.29126 -17.21167 -16.72520 -16.08412 -15.81272 -15.74794 -15.57698 -15.33086 -14.91146 -14.69952 -14.63011 -14.39373 -14.18845 -13.99646 -13.86796 -13.71296 -13.52391 -13.35640 -13.17917 -12.82991 -12.79658 -12.70123 -12.51819 -12.27382 -11.98057 -11.88177 -11.57989 -11.54590 -11.49743 -10.84731 -10.65688 -10.39709 -9.09534 -8.76198 -8.40388 -6.53240 -0.16039 0.69226 1.13960 1.15960 1.18550 1.54279 1.56291 1.71929 1.79127 2.09111 2.38010 2.45808 2.62393 2.92216 2.99483 3.07369 3.79535 3.82048 3.97413 4.08315 4.13370 4.25850 4.27153 4.31892 4.34743 4.36667 4.42444 4.64796 4.79505 4.83817 4.90365 4.93105 4.96833 5.00427 5.12636 5.42304 5.48039 5.50734 5.67734 5.68993 5.75149 5.92943 6.11441 6.18940 6.39861 6.41284 6.73429 6.75682 7.28493 8.61227 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.009299 B = 0.004098 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.384151 B = 6831.226209 C = 8739.308387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.364 6.364 4 C 0.464 3.536 5 O -0.532 6.532 6 C -0.099 4.099 7 C 0.217 3.783 8 H 0.019 0.981 9 C -0.618 4.618 10 H 0.055 0.945 11 C -0.005 4.005 12 N -0.918 5.918 13 Si 1.107 2.893 14 H -0.283 1.283 15 H -0.265 1.265 16 H -0.278 1.278 17 O -0.324 6.324 18 C 0.175 3.825 19 C -0.185 4.185 20 C -0.011 4.011 21 C -0.169 4.169 22 C -0.070 4.070 23 C 0.088 3.912 24 C 0.304 3.696 25 N -0.436 5.436 26 N -0.577 5.577 27 H 0.424 0.576 28 C 0.148 3.852 29 C -0.247 4.247 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.258 0.742 38 H 0.143 0.857 39 H 0.177 0.823 40 H 0.194 0.806 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -7.801 8.283 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.282 6.282 4 C 0.308 3.692 5 O -0.421 6.421 6 C -0.136 4.136 7 C 0.162 3.838 8 H 0.037 0.963 9 C -0.656 4.656 10 H 0.074 0.926 11 C -0.206 4.206 12 N -0.554 5.554 13 Si 0.929 3.071 14 H -0.209 1.209 15 H -0.190 1.190 16 H -0.203 1.203 17 O -0.237 6.237 18 C 0.127 3.873 19 C -0.204 4.204 20 C -0.029 4.029 21 C -0.173 4.173 22 C -0.099 4.099 23 C -0.020 4.020 24 C -0.011 4.011 25 N -0.113 5.113 26 N -0.182 5.182 27 H 0.263 0.737 28 C 0.037 3.963 29 C -0.269 4.269 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.069 0.931 38 H 0.161 0.839 39 H 0.195 0.805 40 H 0.212 0.788 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.580 -7.299 6.328 9.678 hybrid contribution -1.060 -0.695 -0.042 1.268 sum -0.479 -7.994 6.286 10.181 Atomic orbital electron populations 1.21815 0.89828 1.04519 1.03747 1.23318 0.97504 0.79448 1.02238 1.86539 1.23917 1.33808 1.83906 1.24311 0.80591 0.93177 0.71099 1.90608 1.61072 1.43946 1.46524 1.21832 0.95954 0.89824 1.06040 1.19841 0.89249 0.92950 0.81791 0.96322 1.22391 1.46160 1.01303 0.95698 0.92635 1.27018 0.94696 1.07499 0.91402 1.70976 1.38562 1.13741 1.32107 0.83036 0.76094 0.71644 0.76342 1.20888 1.18960 1.20336 1.85844 1.32071 1.67910 1.37876 1.19034 0.84472 0.90102 0.93710 1.20293 0.99285 1.03419 0.97433 1.20525 0.90484 0.94952 0.96954 1.18293 0.97580 1.06533 0.94900 1.21149 0.94801 1.01011 0.92972 1.15188 0.86317 1.06428 0.94087 1.24258 0.91530 0.92755 0.92574 1.81295 1.11831 1.10544 1.07646 1.41803 1.14147 1.47066 1.15180 0.73738 1.17992 0.89760 0.98693 0.89902 1.20025 0.95543 1.10561 1.00803 0.91012 0.91440 0.87772 0.92006 0.91382 0.86575 0.87325 0.93093 0.83876 0.80545 0.78844 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.29 71.98 0.74 -1.79 16 2 C 0.05 1.28 6.19 71.98 0.45 1.73 16 3 O -0.36 -12.47 10.22 -51.41 -0.53 -12.99 16 4 C 0.46 18.85 7.84 71.23 0.56 19.41 16 5 O -0.53 -24.19 15.18 26.92 0.41 -23.78 16 6 C -0.10 -4.20 5.40 29.85 0.16 -4.04 16 7 C 0.22 10.49 0.80 29.85 0.02 10.51 16 8 H 0.02 1.02 4.89 -2.38 -0.01 1.01 16 9 C -0.62 -31.73 7.69 25.60 0.20 -31.53 16 10 H 0.06 2.92 7.82 -2.91 -0.02 2.89 16 11 C -0.01 -0.26 5.45 84.65 0.46 0.20 16 12 N -0.92 -50.32 13.63 21.45 0.29 -50.03 16 13 Si 1.11 46.38 29.91 68.60 2.05 48.43 16 14 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 16 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 17 O -0.32 -15.06 9.05 -78.65 -0.71 -15.77 16 18 C 0.18 7.39 6.60 22.56 0.15 7.54 16 19 C -0.19 -6.05 9.90 22.11 0.22 -5.83 16 20 C -0.01 -0.28 10.05 22.29 0.22 -0.05 16 21 C -0.17 -4.76 6.16 -21.34 -0.13 -4.90 16 22 C -0.07 -1.53 10.76 22.57 0.24 -1.28 16 23 C 0.09 2.17 6.87 38.85 0.27 2.44 16 24 C 0.30 7.54 15.86 88.33 1.40 8.94 16 25 N -0.44 -12.21 18.54 19.00 0.35 -11.86 16 26 N -0.58 -16.95 6.20 -180.37 -1.12 -18.07 16 27 H 0.42 11.49 8.96 -92.71 -0.83 10.66 16 28 C 0.15 5.17 7.25 39.08 0.28 5.45 16 29 C -0.25 -10.57 8.71 22.47 0.20 -10.37 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.68 8.13 -2.38 -0.02 1.66 16 34 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 35 H 0.12 4.53 8.14 -2.39 -0.02 4.51 16 36 H 0.11 4.75 7.90 -2.39 -0.02 4.74 16 37 H 0.26 14.43 6.44 -92.71 -0.60 13.83 16 38 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.19 2.53 8.06 -2.91 -0.02 2.50 16 41 H 0.11 5.24 5.63 -2.91 -0.02 5.22 16 Total: -1.00 -66.38 364.50 6.62 -59.76 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.44 Total: 27.87 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 5.44 Total: -3.56 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -0.47 Total: -79.96 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -0.83 Total: -52.54 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.05 Total: 48.43 kcal Total: -66.38 6.62 -59.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233995338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.669 kcal (2) G-P(sol) polarization free energy of solvation -66.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds