Wall clock time and date at job start Tue Mar 31 2020 16:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47208 * 2 1 4 4 C 1.34221 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47461 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.47001 * 54.49014 * 7 6 4 9 9 C 1.50705 * 109.47438 * 174.48572 * 7 6 4 10 10 H 1.07998 * 119.99690 * 94.63616 * 9 7 6 11 11 C 1.37879 * 119.99781 * 274.64605 * 9 7 6 12 12 N 1.31514 * 120.00114 * 6.43086 * 11 9 7 13 13 Si 1.86803 * 119.99515 * 186.43881 * 11 9 7 14 14 H 1.48501 * 109.46602 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47263 * 299.99344 * 13 11 9 16 16 H 1.48496 * 109.47274 * 60.00096 * 13 11 9 17 17 O 1.42895 * 109.47404 * 294.48768 * 7 6 4 18 18 C 1.35570 * 117.00177 * 149.99661 * 17 7 6 19 19 N 1.32767 * 120.52204 * 0.02562 * 18 17 7 20 20 C 1.31789 * 120.74439 * 179.97438 * 19 18 17 21 21 C 1.50704 * 119.07118 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.47165 * 89.99737 * 21 20 19 23 23 C 1.42894 * 113.99834 * 180.02562 * 22 21 20 24 24 N 1.31753 * 121.86507 * 0.02562 * 20 19 18 25 25 C 1.32511 * 120.98050 * 0.02562 * 24 20 19 26 26 C 1.38405 * 119.14539 * 359.74251 * 25 24 20 27 27 F 1.35096 * 120.84353 * 180.27663 * 26 25 24 28 28 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46872 * 299.99702 * 1 2 3 30 30 H 1.08994 * 109.47314 * 59.99343 * 1 2 3 31 31 H 1.08999 * 109.46872 * 240.00298 * 2 1 3 32 32 H 1.09000 * 109.46938 * 120.00522 * 2 1 3 33 33 H 1.09001 * 109.47159 * 59.99909 * 6 4 3 34 34 H 1.08995 * 109.47433 * 300.00373 * 6 4 3 35 35 H 0.97002 * 120.00212 * 355.09339 * 12 11 9 36 36 H 1.08990 * 109.47504 * 210.00233 * 21 20 19 37 37 H 1.09007 * 109.46777 * 330.00295 * 21 20 19 38 38 H 1.09002 * 109.47350 * 180.02562 * 23 22 21 39 39 H 1.09003 * 109.47001 * 299.99787 * 23 22 21 40 40 H 1.08993 * 109.47359 * 59.99985 * 23 22 21 41 41 H 1.08006 * 120.42714 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2425 -0.8370 9 6 6.0243 4.2434 -0.1361 10 1 6.3052 4.8003 0.7456 11 6 6.1922 4.8005 -1.3861 12 7 5.7352 4.1777 -2.4504 13 14 7.0691 6.4399 -1.5677 14 1 7.1195 6.8179 -3.0029 15 1 6.3339 7.4816 -0.8066 16 1 8.4516 6.3231 -1.0383 17 8 5.8952 2.2742 1.2256 18 6 7.0512 1.5671 1.1856 19 7 7.7222 1.4356 0.0476 20 6 8.8466 0.7496 0.0038 21 6 9.5771 0.6240 -1.3084 22 8 10.5023 1.7047 -1.4438 23 6 11.2506 1.6801 -2.6609 24 7 9.3497 0.1696 1.0745 25 6 8.7382 0.2544 2.2470 26 6 7.5567 0.9690 2.3410 27 9 6.9076 1.0823 3.5204 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5852 3.4690 0.8905 34 1 3.5844 3.4701 -0.8894 35 1 5.3438 3.2943 -2.3648 36 1 10.1174 -0.3222 -1.3344 37 1 8.8594 0.6554 -2.1282 38 1 11.9299 2.5321 -2.6871 39 1 11.8256 0.7556 -2.7153 40 1 10.5675 1.7335 -3.5085 41 1 9.1588 -0.2243 3.1191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234877402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:22 Heat of formation + Delta-G solvation = -167.474992 kcal Electronic energy + Delta-G solvation = -28874.590808 eV Core-core repulsion = 24477.465936 eV Total energy + Delta-G solvation = -4397.124873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.56148 -40.75465 -40.01618 -38.13107 -37.42021 -36.16199 -33.86195 -32.89425 -31.77972 -31.53083 -30.16810 -27.77127 -26.04799 -25.58101 -24.31974 -23.30130 -22.32268 -21.93544 -20.24993 -18.41749 -18.00098 -17.51185 -17.05464 -16.67287 -16.42055 -16.30404 -15.79687 -15.67326 -15.53947 -15.31631 -14.36957 -14.28235 -14.08772 -13.86064 -13.57215 -13.39464 -12.98999 -12.89237 -12.66355 -12.48894 -12.22809 -12.14595 -11.92089 -11.50911 -11.39577 -11.36734 -11.30007 -11.09625 -10.86524 -10.32594 -10.24497 -10.11463 -9.97789 -9.92242 -9.56500 -9.00803 -8.88628 -8.58678 -8.17440 -6.63172 -4.41390 0.99470 1.48398 2.74114 3.06416 3.33411 3.40233 3.42456 3.56557 3.58654 4.08752 4.31114 4.35442 4.44987 4.60090 4.96764 5.00520 5.04100 5.10995 5.22084 5.24726 5.32205 5.37594 5.45409 5.53364 5.67805 5.73820 5.77315 5.78289 5.79928 5.94677 6.02066 6.04092 6.35632 6.64486 6.79268 6.91557 7.18886 7.24949 7.63714 7.75454 8.25118 8.27076 8.39130 8.54220 9.33027 10.73585 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.008537 B = 0.005246 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.095047 B = 5336.592155 C = 6979.540647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.364 6.364 4 C 0.457 3.543 5 O -0.511 6.511 6 C -0.105 4.105 7 C 0.210 3.790 8 H 0.070 0.930 9 C -0.614 4.614 10 H 0.061 0.939 11 C 0.039 3.961 12 N -0.889 5.889 13 Si 1.071 2.929 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.284 1.284 17 O -0.290 6.290 18 C 0.384 3.616 19 N -0.508 5.508 20 C 0.344 3.656 21 C 0.138 3.862 22 O -0.378 6.378 23 C 0.035 3.965 24 N -0.520 5.520 25 C 0.140 3.860 26 C -0.041 4.041 27 F -0.122 7.122 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.270 0.730 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.041 0.959 40 H 0.046 0.954 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.247 -8.077 2.646 8.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.282 6.282 4 C 0.301 3.699 5 O -0.399 6.399 6 C -0.143 4.143 7 C 0.155 3.845 8 H 0.088 0.912 9 C -0.651 4.651 10 H 0.080 0.920 11 C -0.168 4.168 12 N -0.523 5.523 13 Si 0.898 3.102 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.210 1.210 17 O -0.192 6.192 18 C 0.194 3.806 19 N -0.239 5.239 20 C 0.075 3.925 21 C 0.059 3.941 22 O -0.295 6.295 23 C -0.062 4.062 24 N -0.241 5.241 25 C -0.023 4.023 26 C -0.067 4.067 27 F -0.101 7.101 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.055 -7.053 1.061 7.210 hybrid contribution -1.125 -1.368 1.828 2.545 sum -0.070 -8.421 2.889 8.903 Atomic orbital electron populations 1.21782 0.93035 1.02508 1.03410 1.22909 0.95050 0.81407 1.02181 1.86569 1.25711 1.31421 1.84524 1.24707 0.79784 0.93997 0.71433 1.90605 1.60308 1.43466 1.45490 1.22166 0.97242 0.88875 1.05995 1.20233 0.87552 0.94968 0.81707 0.91200 1.22076 1.47037 0.99952 0.96053 0.92031 1.25874 0.94533 1.04987 0.91448 1.70841 1.35612 1.14340 1.31552 0.83514 0.76398 0.73941 0.76396 1.20425 1.21120 1.21005 1.86168 1.32238 1.60724 1.40095 1.20095 0.86766 0.86073 0.87638 1.68109 1.09720 1.19142 1.26898 1.22392 0.87886 0.88278 0.93908 1.20892 0.91400 0.90665 0.91097 1.87955 1.54211 1.47562 1.39814 1.22753 0.95259 1.01714 0.86453 1.68154 1.33688 1.23787 0.98480 1.23034 0.89017 0.93499 0.96776 1.18645 0.97371 1.08680 0.82041 1.91485 1.80540 1.94876 1.43188 0.90660 0.91613 0.91532 0.91637 0.91710 0.87981 0.86146 0.91890 0.90607 0.90256 0.89446 0.94087 0.93552 0.80344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.29 37.16 0.38 -1.19 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.36 -6.52 10.22 -39.23 -0.40 -6.92 16 4 C 0.46 9.53 7.84 36.01 0.28 9.82 16 5 O -0.51 -11.81 15.18 -23.93 -0.36 -12.17 16 6 C -0.10 -2.28 5.38 -27.88 -0.15 -2.44 16 7 C 0.21 5.25 1.05 -27.88 -0.03 5.22 16 8 H 0.07 1.91 5.63 -51.93 -0.29 1.62 16 9 C -0.61 -16.53 8.64 -34.44 -0.30 -16.82 16 10 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 11 C 0.04 1.04 5.45 -17.82 -0.10 0.95 16 12 N -0.89 -24.82 13.63 55.43 0.76 -24.06 16 13 Si 1.07 24.30 29.91 -169.99 -5.08 19.22 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 O -0.29 -7.16 8.94 -32.33 -0.29 -7.45 16 18 C 0.38 8.89 7.49 -16.65 -0.12 8.76 16 19 N -0.51 -11.79 8.71 -10.73 -0.09 -11.88 16 20 C 0.34 6.87 7.27 -157.23 -1.14 5.72 16 21 C 0.14 2.32 6.37 36.01 0.23 2.55 16 22 O -0.38 -6.70 10.69 -35.23 -0.38 -7.08 16 23 C 0.03 0.44 11.01 101.05 1.11 1.55 16 24 N -0.52 -9.41 10.33 -10.74 -0.11 -9.52 16 25 C 0.14 2.32 11.29 -17.20 -0.19 2.13 16 26 C -0.04 -0.81 7.39 -39.02 -0.29 -1.10 16 27 F -0.12 -2.31 17.19 2.25 0.04 -2.27 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 32 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.10 2.07 8.14 -51.93 -0.42 1.65 16 34 H 0.12 2.64 7.84 -51.93 -0.41 2.23 16 35 H 0.27 7.55 6.39 -40.82 -0.26 7.28 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.18 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 367.07 15.07 5.53 5.53 Total: -1.00 -32.63 367.07 -5.72 -38.35 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.24 Total: 2.04 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: -0.09 Total: 16.22 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.55 Total: -45.46 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.43 Total: -33.62 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.22 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.63 -5.72 -38.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234877402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.127 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds