Wall clock time and date at job start Tue Mar 31 2020 16:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47208 * 2 1 4 4 C 1.34221 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47461 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.47001 * 54.49014 * 7 6 4 9 9 C 1.50705 * 109.47438 * 174.48572 * 7 6 4 10 10 H 1.07998 * 119.99690 * 94.63616 * 9 7 6 11 11 C 1.37879 * 119.99781 * 274.64605 * 9 7 6 12 12 N 1.31514 * 120.00114 * 6.43086 * 11 9 7 13 13 Si 1.86803 * 119.99515 * 186.43881 * 11 9 7 14 14 H 1.48501 * 109.46602 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47263 * 299.99344 * 13 11 9 16 16 H 1.48496 * 109.47274 * 60.00096 * 13 11 9 17 17 O 1.42895 * 109.47404 * 294.48768 * 7 6 4 18 18 C 1.35570 * 117.00177 * 149.99661 * 17 7 6 19 19 N 1.32767 * 120.52204 * 0.02562 * 18 17 7 20 20 C 1.31789 * 120.74439 * 179.97438 * 19 18 17 21 21 C 1.50704 * 119.07118 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.47165 * 89.99737 * 21 20 19 23 23 C 1.42894 * 113.99834 * 180.02562 * 22 21 20 24 24 N 1.31753 * 121.86507 * 0.02562 * 20 19 18 25 25 C 1.32511 * 120.98050 * 0.02562 * 24 20 19 26 26 C 1.38405 * 119.14539 * 359.74251 * 25 24 20 27 27 F 1.35096 * 120.84353 * 180.27663 * 26 25 24 28 28 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46872 * 299.99702 * 1 2 3 30 30 H 1.08994 * 109.47314 * 59.99343 * 1 2 3 31 31 H 1.08999 * 109.46872 * 240.00298 * 2 1 3 32 32 H 1.09000 * 109.46938 * 120.00522 * 2 1 3 33 33 H 1.09001 * 109.47159 * 59.99909 * 6 4 3 34 34 H 1.08995 * 109.47433 * 300.00373 * 6 4 3 35 35 H 0.97002 * 120.00212 * 355.09339 * 12 11 9 36 36 H 1.08990 * 109.47504 * 210.00233 * 21 20 19 37 37 H 1.09007 * 109.46777 * 330.00295 * 21 20 19 38 38 H 1.09002 * 109.47350 * 180.02562 * 23 22 21 39 39 H 1.09003 * 109.47001 * 299.99787 * 23 22 21 40 40 H 1.08993 * 109.47359 * 59.99985 * 23 22 21 41 41 H 1.08006 * 120.42714 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2425 -0.8370 9 6 6.0243 4.2434 -0.1361 10 1 6.3052 4.8003 0.7456 11 6 6.1922 4.8005 -1.3861 12 7 5.7352 4.1777 -2.4504 13 14 7.0691 6.4399 -1.5677 14 1 7.1195 6.8179 -3.0029 15 1 6.3339 7.4816 -0.8066 16 1 8.4516 6.3231 -1.0383 17 8 5.8952 2.2742 1.2256 18 6 7.0512 1.5671 1.1856 19 7 7.7222 1.4356 0.0476 20 6 8.8466 0.7496 0.0038 21 6 9.5771 0.6240 -1.3084 22 8 10.5023 1.7047 -1.4438 23 6 11.2506 1.6801 -2.6609 24 7 9.3497 0.1696 1.0745 25 6 8.7382 0.2544 2.2470 26 6 7.5567 0.9690 2.3410 27 9 6.9076 1.0823 3.5204 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5852 3.4690 0.8905 34 1 3.5844 3.4701 -0.8894 35 1 5.3438 3.2943 -2.3648 36 1 10.1174 -0.3222 -1.3344 37 1 8.8594 0.6554 -2.1282 38 1 11.9299 2.5321 -2.6871 39 1 11.8256 0.7556 -2.7153 40 1 10.5675 1.7335 -3.5085 41 1 9.1588 -0.2243 3.1191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234877402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:21 Heat of formation + Delta-G solvation = -189.599336 kcal Electronic energy + Delta-G solvation = -28875.550192 eV Core-core repulsion = 24477.465936 eV Total energy + Delta-G solvation = -4398.084256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.07341 -42.32720 -41.62403 -39.80310 -38.72744 -37.72830 -35.79947 -34.47862 -33.27939 -32.83589 -31.82063 -29.07673 -27.88830 -26.79944 -25.98877 -24.67964 -23.83043 -23.48079 -21.89290 -20.19712 -19.58743 -19.22263 -18.60170 -18.35996 -17.82966 -17.74784 -17.32714 -17.21262 -16.97899 -16.57480 -16.02244 -15.70474 -15.63156 -15.48237 -15.17707 -15.00458 -14.51252 -14.31134 -13.97275 -13.83017 -13.71124 -13.43796 -13.29722 -13.19174 -12.90214 -12.85634 -12.62048 -12.57156 -12.36217 -12.07213 -11.91321 -11.68969 -11.61610 -11.57676 -10.88098 -10.76410 -10.60311 -10.47127 -9.88408 -8.76459 -6.55262 -0.51522 -0.06944 1.06500 1.50691 1.53831 1.63366 1.77883 1.81735 2.16187 2.47285 2.61439 2.83800 2.86450 3.08130 3.30122 3.54095 3.70805 3.90952 3.97406 4.01969 4.02773 4.17033 4.24109 4.25923 4.30288 4.40172 4.51823 4.57624 4.62472 4.78687 4.84376 4.85593 4.95886 5.07126 5.09338 5.34112 5.63803 5.66089 5.80419 6.06825 6.25384 6.37690 6.64145 6.83222 7.25878 8.59770 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.008537 B = 0.005246 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.095047 B = 5336.592155 C = 6979.540647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.361 6.361 4 C 0.465 3.535 5 O -0.537 6.537 6 C -0.100 4.100 7 C 0.218 3.782 8 H 0.040 0.960 9 C -0.624 4.624 10 H 0.047 0.953 11 C 0.000 4.000 12 N -0.906 5.906 13 Si 1.110 2.890 14 H -0.275 1.275 15 H -0.263 1.263 16 H -0.284 1.284 17 O -0.307 6.307 18 C 0.347 3.653 19 N -0.545 5.545 20 C 0.331 3.669 21 C 0.139 3.861 22 O -0.411 6.411 23 C 0.028 3.972 24 N -0.510 5.510 25 C 0.166 3.834 26 C -0.049 4.049 27 F -0.119 7.119 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.259 0.741 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -8.943 3.410 9.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.278 6.278 4 C 0.309 3.691 5 O -0.427 6.427 6 C -0.138 4.138 7 C 0.163 3.837 8 H 0.058 0.942 9 C -0.661 4.661 10 H 0.066 0.934 11 C -0.202 4.202 12 N -0.541 5.541 13 Si 0.932 3.068 14 H -0.200 1.200 15 H -0.188 1.188 16 H -0.210 1.210 17 O -0.210 6.210 18 C 0.158 3.842 19 N -0.276 5.276 20 C 0.064 3.936 21 C 0.061 3.939 22 O -0.330 6.330 23 C -0.068 4.068 24 N -0.230 5.230 25 C 0.001 3.999 26 C -0.075 4.075 27 F -0.098 7.098 28 H 0.123 0.877 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.571 -7.933 1.825 8.290 hybrid contribution -1.247 -1.245 1.641 2.407 sum 0.324 -9.178 3.466 9.816 Atomic orbital electron populations 1.21816 0.89567 1.04611 1.03842 1.23343 0.97692 0.79332 1.02173 1.86540 1.23598 1.33919 1.83760 1.24305 0.80726 0.93084 0.70949 1.90590 1.61214 1.44065 1.46854 1.21898 0.95553 0.89970 1.06377 1.19953 0.89102 0.93394 0.81240 0.94180 1.22225 1.47447 1.00798 0.95672 0.93420 1.27067 0.94428 1.07520 0.91176 1.70935 1.36993 1.14176 1.31990 0.83017 0.75589 0.71407 0.76827 1.19960 1.18787 1.21046 1.86106 1.33587 1.61757 1.39546 1.20571 0.86878 0.87467 0.89248 1.68082 1.11175 1.20650 1.27648 1.23057 0.87242 0.87662 0.95686 1.21015 0.91470 0.92067 0.89340 1.87894 1.54697 1.48272 1.42089 1.23007 0.95221 1.03866 0.84657 1.68309 1.33112 1.23031 0.98557 1.23918 0.87057 0.91159 0.97737 1.18835 0.98336 1.09094 0.81198 1.91487 1.80709 1.94934 1.42676 0.87663 0.91051 0.91217 0.91839 0.91670 0.86624 0.86604 0.93091 0.87031 0.91162 0.88286 0.91105 0.93616 0.74803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 10.29 71.98 0.74 -1.90 16 2 C 0.05 1.33 6.19 71.98 0.45 1.78 16 3 O -0.36 -12.89 10.22 -51.33 -0.52 -13.42 16 4 C 0.46 19.89 7.84 71.24 0.56 20.45 16 5 O -0.54 -25.66 15.18 26.93 0.41 -25.25 16 6 C -0.10 -4.52 5.38 29.85 0.16 -4.36 16 7 C 0.22 11.40 1.05 29.85 0.03 11.43 16 8 H 0.04 2.33 5.63 -2.38 -0.01 2.32 16 9 C -0.62 -34.77 8.64 25.60 0.22 -34.55 16 10 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 11 C 0.00 0.02 5.45 84.66 0.46 0.48 16 12 N -0.91 -52.08 13.63 21.45 0.29 -51.78 16 13 Si 1.11 49.36 29.91 68.60 2.05 51.41 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 O -0.31 -15.73 8.94 -75.46 -0.68 -16.40 16 18 C 0.35 16.47 7.49 84.87 0.64 17.11 16 19 N -0.54 -26.05 8.71 -300.54 -2.62 -28.66 16 20 C 0.33 13.19 7.27 138.77 1.01 14.20 16 21 C 0.14 4.61 6.37 71.24 0.45 5.07 16 22 O -0.41 -14.35 10.69 -148.98 -1.59 -15.95 16 23 C 0.03 0.67 11.01 113.37 1.25 1.92 16 24 N -0.51 -17.48 10.33 -187.90 -1.94 -19.42 16 25 C 0.17 5.05 11.29 84.63 0.96 6.01 16 26 C -0.05 -1.91 7.39 22.63 0.17 -1.74 16 27 F -0.12 -4.41 17.19 44.97 0.77 -3.64 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 32 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 33 H 0.12 4.81 8.14 -2.39 -0.02 4.79 16 34 H 0.12 5.29 7.84 -2.39 -0.02 5.27 16 35 H 0.26 15.16 6.39 -92.71 -0.59 14.56 16 36 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.09 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.24 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -73.79 367.07 4.50 -69.29 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 1.24 Total: 17.93 kcal Atomic # 6 Polarization: 28.81 SS G_CDS: 7.09 Total: 35.89 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -4.27 Total: -99.87 kcal Atomic # 8 Polarization: -68.64 SS G_CDS: -2.38 Total: -71.02 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.77 Total: -3.64 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.05 Total: 51.41 kcal Total: -73.79 4.50 -69.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234877402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.311 kcal (2) G-P(sol) polarization free energy of solvation -73.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds