Wall clock time and date at job start Tue Mar 31 2020 16:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45209 * 109.47005 * 2 1 4 4 C 1.34226 * 117.00215 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99596 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99961 * 179.97438 * 4 3 2 7 7 O 1.42902 * 109.46691 * 179.97438 * 6 4 3 8 8 C 1.35831 * 116.99584 * 179.97438 * 7 6 4 9 9 C 1.38886 * 119.92776 * 180.02562 * 8 7 6 10 10 C 1.37856 * 120.06739 * 179.97438 * 9 8 7 11 11 C 1.39470 * 119.92869 * 0.02562 * 10 9 8 12 12 C 1.48212 * 120.06614 * 179.97438 * 11 10 9 13 13 C 1.40094 * 119.99110 * 4.97964 * 12 11 10 14 14 N 1.32160 * 120.28884 * 180.02562 * 13 12 11 15 15 C 1.31897 * 120.28996 * 359.67865 * 14 13 12 16 16 C 1.40816 * 119.97858 * 0.57658 * 15 14 13 17 17 C 1.41318 * 120.14841 * 179.73224 * 16 15 14 18 18 H 1.07993 * 119.99590 * 16.92741 * 17 16 15 19 19 C 1.40043 * 119.99790 * 196.93230 * 17 16 15 20 20 N 1.30732 * 119.99328 * 189.45215 * 19 17 16 21 21 Si 1.86796 * 120.00086 * 9.45225 * 19 17 16 22 22 H 1.48502 * 109.47329 * 269.99645 * 21 19 17 23 23 H 1.48497 * 109.47168 * 30.00357 * 21 19 17 24 24 H 1.48509 * 109.46933 * 150.00073 * 21 19 17 25 25 N 1.32554 * 119.98733 * 184.99870 * 12 11 10 26 26 C 1.39471 * 119.86234 * 0.27221 * 11 10 9 27 27 C 1.37846 * 119.92680 * 359.44588 * 26 11 10 28 28 H 1.08992 * 109.47092 * 60.00717 * 1 2 3 29 29 H 1.09005 * 109.46542 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47295 * 300.00093 * 1 2 3 31 31 H 1.08999 * 109.47778 * 239.99942 * 2 1 3 32 32 H 1.09008 * 109.47416 * 119.99468 * 2 1 3 33 33 H 1.08993 * 109.46919 * 59.99796 * 6 4 3 34 34 H 1.08996 * 109.47120 * 299.99529 * 6 4 3 35 35 H 1.07993 * 119.96485 * 359.96130 * 9 8 7 36 36 H 1.07999 * 120.03324 * 180.02562 * 10 9 8 37 37 H 1.07999 * 119.85636 * 0.02562 * 13 12 11 38 38 H 1.08004 * 120.01661 * 180.29487 * 15 14 13 39 39 H 0.96999 * 120.00846 * 354.92269 * 20 19 17 40 40 H 1.08002 * 120.03388 * 179.73443 * 26 11 10 41 41 H 1.07999 * 119.96527 * 180.25828 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9376 -0.0012 7 8 5.3476 2.8628 -0.0010 8 6 6.0267 4.0392 -0.0021 9 6 7.4156 4.0375 -0.0026 10 6 8.1077 5.2297 -0.0042 11 6 7.4117 6.4384 -0.0048 12 6 8.1527 7.7219 -0.0059 13 6 9.5497 7.7240 -0.1118 14 7 10.2164 8.8651 -0.1129 15 6 9.5720 10.0122 -0.0207 16 6 8.1683 10.0237 0.0916 17 6 7.4747 11.2504 0.1963 18 1 7.9644 12.1727 -0.0791 19 6 6.1524 11.2700 0.6571 20 7 5.4500 12.3700 0.5810 21 14 5.3924 9.7246 1.3805 22 1 4.7420 8.9403 0.3001 23 1 6.4526 8.9037 2.0187 24 1 4.3783 10.1012 2.3979 25 7 7.4935 8.8676 0.0936 26 6 6.0170 6.4366 0.0020 27 6 5.3308 5.2411 -0.0023 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.5849 3.4699 0.8887 34 1 3.5844 3.4694 -0.8912 35 1 7.9538 3.1013 -0.0015 36 1 9.1877 5.2278 -0.0050 37 1 10.0841 6.7890 -0.1928 38 1 10.1209 10.9423 -0.0269 39 1 5.8659 13.1909 0.2742 40 1 5.4753 7.3709 0.0059 41 1 4.2508 5.2390 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243138383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:22 Heat of formation + Delta-G solvation = -68.257834 kcal Electronic energy + Delta-G solvation = -26127.846501 eV Core-core repulsion = 22165.793231 eV Total energy + Delta-G solvation = -3962.053269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 3.96 seconds Orbital eigenvalues (eV) -40.99916 -40.09989 -39.36450 -37.51412 -36.76215 -34.28962 -32.95306 -32.32307 -31.62180 -31.04027 -29.57525 -28.19820 -25.99696 -24.01738 -23.69814 -22.85873 -21.81565 -21.39733 -20.53012 -18.73065 -18.60090 -17.66893 -17.36742 -17.01927 -16.32847 -15.99277 -15.96796 -15.66505 -15.14312 -14.45757 -14.37469 -14.01572 -13.84571 -13.64148 -13.31281 -13.23282 -13.07698 -12.93570 -12.71849 -12.61162 -12.29575 -12.05037 -11.79687 -11.53574 -11.34378 -11.21127 -11.00265 -10.98323 -10.82511 -10.52945 -10.10417 -9.79482 -9.42922 -9.24744 -8.89371 -8.64224 -7.90395 -7.54155 -7.32374 -4.99856 1.10244 1.50867 1.75059 1.77014 2.35452 2.59081 3.28729 3.29457 3.42756 3.73018 3.94644 4.11298 4.17557 4.46842 4.49369 4.51425 4.61378 4.65069 4.81213 4.84944 4.93949 4.99535 5.19518 5.31727 5.35529 5.41364 5.48116 5.51808 5.63707 5.69583 5.95559 5.97297 6.02804 6.18811 6.35610 6.40974 6.58981 6.71764 6.75943 6.94114 7.19520 7.24063 7.27498 7.36001 7.81070 7.96923 8.34549 8.75252 9.23008 9.77998 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.016792 B = 0.002691 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.069417 B =10403.512034 C =11954.685197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.355 6.355 4 C 0.466 3.534 5 O -0.485 6.485 6 C 0.067 3.933 7 O -0.297 6.297 8 C 0.122 3.878 9 C -0.147 4.147 10 C -0.062 4.062 11 C -0.058 4.058 12 C 0.163 3.837 13 C -0.099 4.099 14 N -0.421 5.421 15 C -0.042 4.042 16 C 0.205 3.795 17 C -0.460 4.460 18 H 0.090 0.910 19 C 0.046 3.954 20 N -0.794 5.794 21 Si 1.130 2.870 22 H -0.277 1.277 23 H -0.273 1.273 24 H -0.319 1.319 25 N -0.529 5.529 26 C -0.059 4.059 27 C -0.212 4.212 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.288 0.712 40 H 0.146 0.854 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.134 -18.847 -0.500 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.273 6.273 4 C 0.307 3.693 5 O -0.371 6.371 6 C -0.009 4.009 7 O -0.211 6.211 8 C 0.078 3.922 9 C -0.166 4.166 10 C -0.081 4.081 11 C -0.060 4.060 12 C 0.020 3.980 13 C -0.256 4.256 14 N -0.132 5.132 15 C -0.213 4.213 16 C 0.079 3.921 17 C -0.492 4.492 18 H 0.108 0.892 19 C -0.177 4.177 20 N -0.416 5.416 21 Si 0.962 3.038 22 H -0.205 1.205 23 H -0.200 1.200 24 H -0.250 1.250 25 N -0.251 5.251 26 C -0.077 4.077 27 C -0.231 4.231 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.099 0.901 40 H 0.163 0.837 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.219 -19.843 0.057 22.319 hybrid contribution 1.327 0.935 -0.790 1.805 sum -8.892 -18.908 -0.732 20.907 Atomic orbital electron populations 1.21824 0.92229 1.03190 1.03789 1.23109 0.95520 0.79430 1.02946 1.86452 1.23381 1.33171 1.84264 1.22985 0.81094 0.91731 0.73463 1.90721 1.60284 1.42627 1.43442 1.21860 0.81440 0.91793 1.05805 1.86019 1.16704 1.28916 1.89414 1.19026 0.91732 0.83424 0.98067 1.20246 0.90377 0.98921 1.07058 1.21081 1.00193 0.90287 0.96522 1.18639 0.92865 0.91479 1.02999 1.20246 0.91785 0.91268 0.94702 1.22519 0.91033 0.96189 1.15899 1.67712 1.40257 0.98618 1.06644 1.23227 0.92571 0.95438 1.10038 1.19372 0.91166 0.91519 0.90042 1.20718 0.99226 0.92952 1.36330 0.89235 1.27673 0.93735 1.04354 0.91937 1.70575 1.38420 1.01684 1.30875 0.82554 0.74133 0.71270 0.75812 1.20457 1.19996 1.25011 1.67777 1.37449 0.97791 1.22130 1.21645 0.93919 0.98540 0.93614 1.21191 1.00103 0.91894 1.09907 0.91279 0.89999 0.91270 0.90936 0.90925 0.87360 0.87382 0.84899 0.84484 0.84525 0.84217 0.90069 0.83699 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.29 37.16 0.38 -0.31 16 2 C 0.06 0.44 6.19 37.16 0.23 0.67 16 3 O -0.35 -3.22 10.22 -39.25 -0.40 -3.62 16 4 C 0.47 5.04 8.03 36.00 0.29 5.33 16 5 O -0.49 -6.85 16.25 -25.48 -0.41 -7.26 16 6 C 0.07 0.65 5.33 36.00 0.19 0.84 16 7 O -0.30 -3.90 9.66 -39.16 -0.38 -4.27 16 8 C 0.12 1.70 6.69 -39.10 -0.26 1.44 16 9 C -0.15 -2.04 9.97 -39.48 -0.39 -2.43 16 10 C -0.06 -0.94 9.41 -39.26 -0.37 -1.31 16 11 C -0.06 -1.08 5.88 -104.88 -0.62 -1.69 16 12 C 0.16 3.59 6.73 -82.76 -0.56 3.03 16 13 C -0.10 -2.12 10.61 -16.71 -0.18 -2.30 16 14 N -0.42 -9.70 10.47 -12.04 -0.13 -9.82 16 15 C -0.04 -0.99 10.97 -16.55 -0.18 -1.17 16 16 C 0.20 5.14 6.15 -84.84 -0.52 4.62 16 17 C -0.46 -11.77 9.57 -37.74 -0.36 -12.13 16 18 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 19 C 0.05 1.18 5.52 -17.34 -0.10 1.08 16 20 N -0.79 -20.37 13.65 55.55 0.76 -19.61 16 21 Si 1.13 25.92 24.54 -169.99 -4.17 21.74 16 22 H -0.28 -5.96 5.53 56.52 0.31 -5.65 16 23 H -0.27 -6.44 6.39 56.52 0.36 -6.08 16 24 H -0.32 -7.18 7.11 56.52 0.40 -6.78 16 25 N -0.53 -12.90 4.53 -7.51 -0.03 -12.93 16 26 C -0.06 -1.04 9.49 -39.27 -0.37 -1.41 16 27 C -0.21 -3.01 9.02 -39.48 -0.36 -3.36 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.11 0.82 7.65 -51.93 -0.40 0.42 16 34 H 0.11 0.81 7.65 -51.93 -0.40 0.41 16 35 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.14 1.80 6.21 -52.49 -0.33 1.48 16 37 H 0.14 2.43 6.21 -52.49 -0.33 2.11 16 38 H 0.14 3.00 8.06 -52.48 -0.42 2.58 16 39 H 0.29 7.03 8.73 -40.82 -0.36 6.67 16 40 H 0.15 2.80 4.09 -52.49 -0.21 2.59 16 41 H 0.13 1.41 6.28 -52.49 -0.33 1.08 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -30.74 349.90 -7.32 -38.06 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.65 Total: 1.56 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -3.17 Total: -9.10 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.60 Total: -42.37 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -1.19 Total: -15.16 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -4.17 Total: 21.74 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.74 -7.32 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243138383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.202 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds