Wall clock time and date at job start Tue Mar 31 2020 16:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45209 * 109.47005 * 2 1 4 4 C 1.34226 * 117.00215 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99596 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99961 * 179.97438 * 4 3 2 7 7 O 1.42902 * 109.46691 * 179.97438 * 6 4 3 8 8 C 1.35831 * 116.99584 * 179.97438 * 7 6 4 9 9 C 1.38886 * 119.92776 * 180.02562 * 8 7 6 10 10 C 1.37856 * 120.06739 * 179.97438 * 9 8 7 11 11 C 1.39470 * 119.92869 * 0.02562 * 10 9 8 12 12 C 1.48212 * 120.06614 * 179.97438 * 11 10 9 13 13 C 1.40094 * 119.99110 * 4.97964 * 12 11 10 14 14 N 1.32160 * 120.28884 * 180.02562 * 13 12 11 15 15 C 1.31897 * 120.28996 * 359.67865 * 14 13 12 16 16 C 1.40816 * 119.97858 * 0.57658 * 15 14 13 17 17 C 1.41318 * 120.14841 * 179.73224 * 16 15 14 18 18 H 1.07993 * 119.99590 * 16.92741 * 17 16 15 19 19 C 1.40043 * 119.99790 * 196.93230 * 17 16 15 20 20 N 1.30732 * 119.99328 * 189.45215 * 19 17 16 21 21 Si 1.86796 * 120.00086 * 9.45225 * 19 17 16 22 22 H 1.48502 * 109.47329 * 269.99645 * 21 19 17 23 23 H 1.48497 * 109.47168 * 30.00357 * 21 19 17 24 24 H 1.48509 * 109.46933 * 150.00073 * 21 19 17 25 25 N 1.32554 * 119.98733 * 184.99870 * 12 11 10 26 26 C 1.39471 * 119.86234 * 0.27221 * 11 10 9 27 27 C 1.37846 * 119.92680 * 359.44588 * 26 11 10 28 28 H 1.08992 * 109.47092 * 60.00717 * 1 2 3 29 29 H 1.09005 * 109.46542 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47295 * 300.00093 * 1 2 3 31 31 H 1.08999 * 109.47778 * 239.99942 * 2 1 3 32 32 H 1.09008 * 109.47416 * 119.99468 * 2 1 3 33 33 H 1.08993 * 109.46919 * 59.99796 * 6 4 3 34 34 H 1.08996 * 109.47120 * 299.99529 * 6 4 3 35 35 H 1.07993 * 119.96485 * 359.96130 * 9 8 7 36 36 H 1.07999 * 120.03324 * 180.02562 * 10 9 8 37 37 H 1.07999 * 119.85636 * 0.02562 * 13 12 11 38 38 H 1.08004 * 120.01661 * 180.29487 * 15 14 13 39 39 H 0.96999 * 120.00846 * 354.92269 * 20 19 17 40 40 H 1.08002 * 120.03388 * 179.73443 * 26 11 10 41 41 H 1.07999 * 119.96527 * 180.25828 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9376 -0.0012 7 8 5.3476 2.8628 -0.0010 8 6 6.0267 4.0392 -0.0021 9 6 7.4156 4.0375 -0.0026 10 6 8.1077 5.2297 -0.0042 11 6 7.4117 6.4384 -0.0048 12 6 8.1527 7.7219 -0.0059 13 6 9.5497 7.7240 -0.1118 14 7 10.2164 8.8651 -0.1129 15 6 9.5720 10.0122 -0.0207 16 6 8.1683 10.0237 0.0916 17 6 7.4747 11.2504 0.1963 18 1 7.9644 12.1727 -0.0791 19 6 6.1524 11.2700 0.6571 20 7 5.4500 12.3700 0.5810 21 14 5.3924 9.7246 1.3805 22 1 4.7420 8.9403 0.3001 23 1 6.4526 8.9037 2.0187 24 1 4.3783 10.1012 2.3979 25 7 7.4935 8.8676 0.0936 26 6 6.0170 6.4366 0.0020 27 6 5.3308 5.2411 -0.0023 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.5849 3.4699 0.8887 34 1 3.5844 3.4694 -0.8912 35 1 7.9538 3.1013 -0.0015 36 1 9.1877 5.2278 -0.0050 37 1 10.0841 6.7890 -0.1928 38 1 10.1209 10.9423 -0.0269 39 1 5.8659 13.1909 0.2742 40 1 5.4753 7.3709 0.0059 41 1 4.2508 5.2390 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243138383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:19 Heat of formation + Delta-G solvation = -85.789396 kcal Electronic energy + Delta-G solvation = -26128.606726 eV Core-core repulsion = 22165.793231 eV Total energy + Delta-G solvation = -3962.813495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87259 -41.43060 -40.76016 -38.61229 -37.64548 -36.15956 -34.65821 -33.28198 -32.82720 -32.17355 -30.70298 -29.36949 -27.78145 -25.33169 -24.75677 -23.92623 -23.23090 -22.42818 -21.81667 -20.47952 -19.67818 -18.62340 -18.12311 -18.04360 -17.87970 -17.52201 -17.15207 -16.74152 -16.32226 -16.00486 -15.56981 -15.14882 -15.07136 -14.99194 -14.78646 -14.45831 -14.38410 -13.89959 -13.69692 -13.63197 -13.26988 -13.04048 -12.98248 -12.90698 -12.83220 -12.53624 -12.37753 -11.97504 -11.91342 -11.62215 -11.58634 -11.55306 -11.18720 -11.02104 -10.30000 -10.02869 -9.76276 -9.23431 -8.90384 -6.92484 -0.30212 0.36032 0.58815 0.95351 0.97550 0.99228 1.45187 1.60680 1.90747 2.29321 2.43886 2.50035 2.81652 3.34149 3.45450 3.54016 3.78926 3.84560 3.89630 3.96122 4.02982 4.03552 4.04697 4.09070 4.31464 4.33414 4.35856 4.51731 4.61144 4.77357 4.81308 4.89852 4.92487 5.08248 5.10718 5.17354 5.27962 5.30259 5.36586 5.44416 5.59900 5.62165 5.89835 6.11887 6.22891 6.45912 6.56282 6.94033 7.41655 7.85565 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.016792 B = 0.002691 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.069417 B =10403.512034 C =11954.685197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.352 6.352 4 C 0.471 3.529 5 O -0.525 6.525 6 C 0.058 3.942 7 O -0.308 6.308 8 C 0.136 3.864 9 C -0.146 4.146 10 C -0.050 4.050 11 C -0.093 4.093 12 C 0.156 3.844 13 C -0.089 4.089 14 N -0.428 5.428 15 C -0.064 4.064 16 C 0.193 3.807 17 C -0.490 4.490 18 H 0.078 0.922 19 C 0.021 3.979 20 N -0.817 5.817 21 Si 1.156 2.844 22 H -0.259 1.259 23 H -0.286 1.286 24 H -0.314 1.314 25 N -0.542 5.542 26 C -0.075 4.075 27 C -0.205 4.205 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.177 0.823 38 H 0.151 0.849 39 H 0.286 0.714 40 H 0.124 0.876 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.952 -22.174 -0.597 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.269 6.269 4 C 0.314 3.686 5 O -0.414 6.414 6 C -0.017 4.017 7 O -0.222 6.222 8 C 0.091 3.909 9 C -0.165 4.165 10 C -0.069 4.069 11 C -0.095 4.095 12 C 0.013 3.987 13 C -0.247 4.247 14 N -0.139 5.139 15 C -0.231 4.231 16 C 0.067 3.933 17 C -0.523 4.523 18 H 0.097 0.903 19 C -0.198 4.198 20 N -0.439 5.439 21 Si 0.986 3.014 22 H -0.186 1.186 23 H -0.214 1.214 24 H -0.246 1.246 25 N -0.265 5.265 26 C -0.094 4.094 27 C -0.224 4.224 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.175 0.825 37 H 0.194 0.806 38 H 0.168 0.832 39 H 0.097 0.903 40 H 0.141 0.859 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.056 -23.134 -0.053 25.640 hybrid contribution 1.600 1.611 -0.793 2.405 sum -9.456 -21.523 -0.847 23.524 Atomic orbital electron populations 1.21844 0.90199 1.04500 1.03909 1.23379 0.97086 0.78490 1.02915 1.86463 1.22400 1.34408 1.83666 1.23247 0.81339 0.91784 0.72240 1.90710 1.61184 1.43924 1.45574 1.22239 0.79572 0.91549 1.08358 1.86010 1.18764 1.28446 1.88986 1.19113 0.92007 0.83582 0.96189 1.20534 0.90702 0.99338 1.05895 1.21220 1.01153 0.89336 0.95209 1.18637 0.93390 0.90851 1.06643 1.20895 0.92626 0.91993 0.93144 1.23249 0.91313 0.97079 1.13093 1.67783 1.40445 0.98917 1.06771 1.23354 0.92253 0.96365 1.11162 1.19516 0.91908 0.91814 0.90078 1.20689 0.99852 0.93060 1.38712 0.90348 1.28367 0.94076 1.05534 0.91786 1.70593 1.38611 1.01939 1.32762 0.82229 0.73546 0.69685 0.75923 1.18552 1.21409 1.24569 1.67767 1.38150 0.98315 1.22268 1.21555 0.93799 0.99018 0.94998 1.21395 1.01744 0.90615 1.08615 0.91121 0.88120 0.91126 0.91026 0.91030 0.84709 0.84702 0.82544 0.82488 0.80591 0.83197 0.90255 0.85853 0.82012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.29 71.98 0.74 -0.26 16 2 C 0.05 0.67 6.19 71.98 0.45 1.11 16 3 O -0.35 -5.56 10.22 -51.38 -0.53 -6.08 16 4 C 0.47 9.03 8.03 71.24 0.57 9.60 16 5 O -0.53 -13.99 16.25 28.38 0.46 -13.53 16 6 C 0.06 0.89 5.33 71.24 0.38 1.27 16 7 O -0.31 -6.93 9.66 -72.57 -0.70 -7.63 16 8 C 0.14 3.26 6.69 22.58 0.15 3.41 16 9 C -0.15 -3.46 9.97 22.33 0.22 -3.24 16 10 C -0.05 -1.35 9.41 22.48 0.21 -1.14 16 11 C -0.09 -3.26 5.88 -20.03 -0.12 -3.38 16 12 C 0.16 6.69 6.73 42.14 0.28 6.97 16 13 C -0.09 -3.62 10.61 85.09 0.90 -2.71 16 14 N -0.43 -19.26 10.47 -192.01 -2.01 -21.27 16 15 C -0.06 -3.05 10.97 85.31 0.94 -2.11 16 16 C 0.19 9.92 6.15 40.22 0.25 10.17 16 17 C -0.49 -26.13 9.57 23.47 0.22 -25.90 16 18 H 0.08 4.19 8.06 -2.91 -0.02 4.17 16 19 C 0.02 1.12 5.52 85.29 0.47 1.59 16 20 N -0.82 -43.18 13.65 21.84 0.30 -42.88 16 21 Si 1.16 53.06 24.54 68.60 1.68 54.75 16 22 H -0.26 -10.96 5.53 99.48 0.55 -10.41 16 23 H -0.29 -13.61 6.39 99.48 0.64 -12.97 16 24 H -0.31 -13.96 7.11 99.48 0.71 -13.25 16 25 N -0.54 -26.49 4.53 -177.66 -0.80 -27.29 16 26 C -0.07 -2.49 9.49 22.47 0.21 -2.28 16 27 C -0.21 -5.09 9.02 22.33 0.20 -4.88 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 32 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.14 1.41 7.65 -2.39 -0.02 1.40 16 34 H 0.14 1.41 7.65 -2.39 -0.02 1.39 16 35 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.16 3.45 6.21 -2.91 -0.02 3.43 16 37 H 0.18 5.59 6.21 -2.91 -0.02 5.57 16 38 H 0.15 6.62 8.06 -2.91 -0.02 6.59 16 39 H 0.29 14.60 8.73 -92.71 -0.81 13.79 16 40 H 0.12 4.63 4.09 -2.91 -0.01 4.62 16 41 H 0.16 2.80 6.28 -2.91 -0.02 2.78 16 Total: -1.00 -68.02 349.90 5.30 -62.72 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.81 Total: 13.00 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 6.09 Total: -11.78 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -2.52 Total: -91.44 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.77 Total: -27.24 kcal Atomic # 14 Polarization: 53.06 SS G_CDS: 1.68 Total: 54.75 kcal Total: -68.02 5.30 -62.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243138383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.068 kcal (2) G-P(sol) polarization free energy of solvation -68.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds