Wall clock time and date at job start Tue Mar 31 2020 16:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45202 * 109.47225 * 2 1 4 4 C 1.34735 * 117.00048 * 179.97438 * 3 2 1 5 5 O 1.21493 * 120.00636 * 0.02562 * 4 3 2 6 6 C 1.47519 * 119.99899 * 179.97438 * 4 3 2 7 7 C 1.39997 * 120.00749 * 0.02562 * 6 4 3 8 8 C 1.37735 * 120.22756 * 179.97438 * 7 6 4 9 9 C 1.38817 * 120.25419 * 0.02562 * 8 7 6 10 10 O 1.35575 * 119.99432 * 180.02562 * 9 8 7 11 11 C 1.42898 * 116.99838 * 359.97231 * 10 9 8 12 12 C 1.40420 * 120.01590 * 359.97438 * 9 8 7 13 13 C 1.47821 * 120.11378 * 179.97438 * 12 9 8 14 14 C 1.40495 * 120.79735 * 129.99998 * 13 12 9 15 15 N 1.31564 * 119.08721 * 179.97438 * 14 13 12 16 16 C 1.33660 * 120.83753 * 0.02562 * 15 14 13 17 17 C 1.41030 * 119.12749 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99644 * 359.97438 * 17 16 15 19 19 C 1.40128 * 119.99615 * 180.02562 * 17 16 15 20 20 N 1.30664 * 120.00438 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99410 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47162 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47056 * 119.99887 * 21 19 17 24 24 H 1.48500 * 109.46571 * 239.99485 * 21 19 17 25 25 N 1.33666 * 121.74673 * 359.97225 * 16 15 14 26 26 C 1.31571 * 120.83542 * 0.02562 * 25 16 15 27 27 C 1.39255 * 119.77121 * 0.25884 * 12 9 8 28 28 H 1.08993 * 109.47521 * 60.00240 * 1 2 3 29 29 H 1.09008 * 109.46618 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47232 * 299.99458 * 1 2 3 31 31 H 1.09001 * 109.47343 * 240.00021 * 2 1 3 32 32 H 1.09002 * 109.47402 * 119.99858 * 2 1 3 33 33 H 1.07995 * 119.88818 * 359.97397 * 7 6 4 34 34 H 1.08000 * 119.87307 * 179.97438 * 8 7 6 35 35 H 1.09006 * 109.47361 * 300.00102 * 11 10 9 36 36 H 1.09006 * 109.47146 * 60.00490 * 11 10 9 37 37 H 1.08998 * 109.47271 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.45430 * 0.25709 * 14 13 12 39 39 H 0.97005 * 120.00430 * 180.02562 * 20 19 17 40 40 H 1.07994 * 120.45734 * 179.97438 * 26 25 16 41 41 H 1.08001 * 120.12446 * 179.74570 * 27 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3497 1.5455 0.0005 5 8 4.0899 0.5821 0.0005 6 6 3.9136 2.9087 0.0000 7 6 3.0609 4.0190 -0.0005 8 6 3.5824 5.2938 -0.0005 9 6 4.9571 5.4871 -0.0005 10 8 5.4648 6.7442 0.0001 11 6 4.5271 7.8225 0.0000 12 6 5.8220 4.3809 0.0000 13 6 7.2861 4.5842 -0.0005 14 6 8.1056 3.9154 0.9242 15 7 9.4047 4.1209 0.8933 16 6 9.9457 4.9531 -0.0019 17 6 11.3426 5.1470 -0.0024 18 1 11.9602 4.6266 0.7145 19 6 11.9289 6.0158 -0.9325 20 7 11.1815 6.6458 -1.7996 21 14 13.7791 6.2733 -0.9327 22 1 14.3934 5.4511 0.1405 23 1 14.3353 5.8666 -2.2481 24 1 14.0792 7.7073 -0.6903 25 7 9.1978 5.6064 -0.8966 26 6 7.8916 5.4508 -0.9259 27 6 5.2956 3.0916 -0.0049 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9905 3.8756 -0.0010 34 1 2.9194 6.1463 -0.0013 35 1 3.9012 7.7598 -0.8903 36 1 3.9006 7.7593 0.8898 37 1 5.0641 8.7710 0.0000 38 1 7.6755 3.2384 1.6475 39 1 11.5874 7.2470 -2.4437 40 1 7.2932 5.9820 -1.6511 41 1 5.9556 2.2367 -0.0087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243329988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:44 Heat of formation + Delta-G solvation = -55.221881 kcal Electronic energy + Delta-G solvation = -26608.304195 eV Core-core repulsion = 22646.816207 eV Total energy + Delta-G solvation = -3961.487988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 5.27 seconds Orbital eigenvalues (eV) -40.55966 -39.80514 -38.66566 -37.21849 -36.35091 -34.01060 -32.45904 -31.84806 -31.72513 -30.28812 -29.15332 -27.41870 -26.13023 -24.33908 -23.02024 -22.87696 -22.21907 -21.19335 -20.41830 -18.00316 -17.88776 -17.64545 -16.76825 -16.57656 -16.18780 -15.72892 -15.48818 -15.00146 -14.71337 -14.44110 -14.24561 -13.82713 -13.60535 -13.50682 -12.98902 -12.88433 -12.75554 -12.56744 -12.49138 -12.09040 -12.02239 -11.87218 -11.68778 -11.33832 -11.31949 -10.97303 -10.92896 -10.77622 -10.64329 -10.45781 -10.29308 -9.61278 -9.17241 -9.15149 -8.95317 -8.33597 -7.59692 -7.24992 -6.59944 -4.77004 0.92553 1.43290 2.45430 2.63611 2.76619 3.00217 3.01999 3.07984 3.08372 3.43368 3.82550 3.97140 4.58033 4.66991 4.71839 4.80573 4.86264 4.95692 5.05876 5.14143 5.18903 5.37607 5.39976 5.53286 5.53391 5.58621 5.71062 5.78781 5.81737 5.88824 5.95440 6.15835 6.21325 6.33750 6.37206 6.42006 6.55774 6.82926 6.91626 7.01328 7.30316 7.52555 7.66077 7.83360 8.10318 8.43677 8.51275 9.07564 10.03970 10.23652 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.002776 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.161707 B =10085.659911 C =11267.532335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.358 6.358 4 C 0.515 3.485 5 O -0.512 6.512 6 C -0.166 4.166 7 C -0.045 4.045 8 C -0.222 4.222 9 C 0.157 3.843 10 O -0.293 6.293 11 C 0.024 3.976 12 C -0.014 4.014 13 C -0.324 4.324 14 C 0.187 3.813 15 N -0.594 5.594 16 C 0.384 3.616 17 C -0.384 4.384 18 H 0.095 0.905 19 C 0.062 3.938 20 N -0.700 5.700 21 Si 0.920 3.080 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.271 1.271 25 N -0.509 5.509 26 C 0.197 3.803 27 C -0.027 4.027 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.277 0.723 40 H 0.127 0.873 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.331 -1.891 0.994 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.275 6.275 4 C 0.361 3.639 5 O -0.401 6.401 6 C -0.167 4.167 7 C -0.063 4.063 8 C -0.241 4.241 9 C 0.110 3.890 10 O -0.204 6.204 11 C -0.071 4.071 12 C -0.016 4.016 13 C -0.334 4.334 14 C 0.013 3.987 15 N -0.312 5.312 16 C 0.151 3.849 17 C -0.418 4.418 18 H 0.113 0.887 19 C -0.166 4.166 20 N -0.320 5.320 21 Si 0.743 3.257 22 H -0.180 1.180 23 H -0.196 1.196 24 H -0.196 1.196 25 N -0.225 5.225 26 C 0.020 3.980 27 C -0.045 4.045 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.147 0.853 39 H 0.088 0.912 40 H 0.145 0.855 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.737 -1.796 0.796 16.852 hybrid contribution -0.709 -0.019 -0.073 0.713 sum -17.446 -1.815 0.723 17.555 Atomic orbital electron populations 1.21800 0.92737 1.02862 1.03469 1.22992 0.95163 0.80392 1.02658 1.86538 1.24293 1.32036 1.84664 1.21190 0.80195 0.90075 0.72450 1.90833 1.60274 1.42574 1.46420 1.18811 0.93802 0.89448 1.14667 1.21024 0.99466 0.90828 0.95003 1.21051 0.93653 0.98199 1.11149 1.19578 0.91260 0.84872 0.93257 1.86211 1.35048 1.12057 1.87131 1.23098 0.93816 0.89186 1.00988 1.17964 0.92805 0.89086 1.01761 1.19455 0.90752 1.14109 1.09097 1.22629 0.89708 0.93002 0.93360 1.68644 1.11766 1.22966 1.27863 1.19950 0.94573 0.85800 0.84609 1.19459 0.89809 1.19693 1.12835 0.88669 1.26197 1.01224 0.94700 0.94471 1.70144 1.36839 1.15250 1.09810 0.86061 0.81025 0.79127 0.79483 1.18010 1.19563 1.19585 1.69361 1.03564 1.24996 1.24590 1.22927 0.92073 0.90163 0.92837 1.21259 0.92602 0.96725 0.93936 0.91498 0.90330 0.91505 0.91254 0.91247 0.84970 0.85111 0.92695 0.92803 0.88242 0.85348 0.91190 0.85511 0.84184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.29 37.16 0.38 -0.61 16 2 C 0.06 0.60 6.20 37.16 0.23 0.83 16 3 O -0.36 -4.48 9.45 -40.59 -0.38 -4.86 16 4 C 0.51 7.80 7.89 34.51 0.27 8.08 16 5 O -0.51 -9.04 16.12 -19.26 -0.31 -9.35 16 6 C -0.17 -2.51 5.87 -105.02 -0.62 -3.13 16 7 C -0.04 -0.57 9.60 -39.11 -0.38 -0.95 16 8 C -0.22 -2.86 9.01 -39.55 -0.36 -3.22 16 9 C 0.16 2.55 6.63 -38.55 -0.26 2.29 16 10 O -0.29 -4.78 8.90 -18.42 -0.16 -4.95 16 11 C 0.02 0.26 9.81 101.05 0.99 1.25 16 12 C -0.01 -0.26 5.52 -104.78 -0.58 -0.83 16 13 C -0.32 -7.19 5.31 -104.28 -0.55 -7.75 16 14 C 0.19 4.37 10.86 -16.82 -0.18 4.19 16 15 N -0.59 -15.85 10.33 -12.40 -0.13 -15.98 16 16 C 0.38 10.84 7.35 -158.16 -1.16 9.67 16 17 C -0.38 -10.43 9.35 -37.82 -0.35 -10.78 16 18 H 0.10 2.48 7.85 -52.49 -0.41 2.07 16 19 C 0.06 1.55 5.50 -17.34 -0.10 1.45 16 20 N -0.70 -18.09 11.40 55.56 0.63 -17.46 16 21 Si 0.92 18.17 29.56 -169.99 -5.03 13.14 16 22 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 N -0.51 -14.05 7.82 -12.40 -0.10 -14.15 16 26 C 0.20 4.76 10.10 -16.81 -0.17 4.59 16 27 C -0.03 -0.45 9.09 -38.77 -0.35 -0.81 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.13 1.37 7.59 -52.49 -0.40 0.97 16 34 H 0.13 1.29 6.27 -52.49 -0.33 0.96 16 35 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 36 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.13 2.60 8.06 -52.49 -0.42 2.18 16 39 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 40 H 0.13 2.82 7.76 -52.49 -0.41 2.42 16 41 H 0.14 2.50 7.63 -52.49 -0.40 2.09 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -32.20 360.88 -8.05 -40.25 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.84 Total: 3.64 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -3.18 Total: 4.28 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.41 Total: -47.59 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.86 Total: -19.16 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.20 -8.05 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243329988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.969 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.28 seconds