Wall clock time and date at job start Tue Mar 31 2020 16:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45202 * 109.47225 * 2 1 4 4 C 1.34735 * 117.00048 * 179.97438 * 3 2 1 5 5 O 1.21493 * 120.00636 * 0.02562 * 4 3 2 6 6 C 1.47519 * 119.99899 * 179.97438 * 4 3 2 7 7 C 1.39997 * 120.00749 * 0.02562 * 6 4 3 8 8 C 1.37735 * 120.22756 * 179.97438 * 7 6 4 9 9 C 1.38817 * 120.25419 * 0.02562 * 8 7 6 10 10 O 1.35575 * 119.99432 * 180.02562 * 9 8 7 11 11 C 1.42898 * 116.99838 * 359.97231 * 10 9 8 12 12 C 1.40420 * 120.01590 * 359.97438 * 9 8 7 13 13 C 1.47821 * 120.11378 * 179.97438 * 12 9 8 14 14 C 1.40495 * 120.79735 * 129.99998 * 13 12 9 15 15 N 1.31564 * 119.08721 * 179.97438 * 14 13 12 16 16 C 1.33660 * 120.83753 * 0.02562 * 15 14 13 17 17 C 1.41030 * 119.12749 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99644 * 359.97438 * 17 16 15 19 19 C 1.40128 * 119.99615 * 180.02562 * 17 16 15 20 20 N 1.30664 * 120.00438 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99410 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47162 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47056 * 119.99887 * 21 19 17 24 24 H 1.48500 * 109.46571 * 239.99485 * 21 19 17 25 25 N 1.33666 * 121.74673 * 359.97225 * 16 15 14 26 26 C 1.31571 * 120.83542 * 0.02562 * 25 16 15 27 27 C 1.39255 * 119.77121 * 0.25884 * 12 9 8 28 28 H 1.08993 * 109.47521 * 60.00240 * 1 2 3 29 29 H 1.09008 * 109.46618 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47232 * 299.99458 * 1 2 3 31 31 H 1.09001 * 109.47343 * 240.00021 * 2 1 3 32 32 H 1.09002 * 109.47402 * 119.99858 * 2 1 3 33 33 H 1.07995 * 119.88818 * 359.97397 * 7 6 4 34 34 H 1.08000 * 119.87307 * 179.97438 * 8 7 6 35 35 H 1.09006 * 109.47361 * 300.00102 * 11 10 9 36 36 H 1.09006 * 109.47146 * 60.00490 * 11 10 9 37 37 H 1.08998 * 109.47271 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.45430 * 0.25709 * 14 13 12 39 39 H 0.97005 * 120.00430 * 180.02562 * 20 19 17 40 40 H 1.07994 * 120.45734 * 179.97438 * 26 25 16 41 41 H 1.08001 * 120.12446 * 179.74570 * 27 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3497 1.5455 0.0005 5 8 4.0899 0.5821 0.0005 6 6 3.9136 2.9087 0.0000 7 6 3.0609 4.0190 -0.0005 8 6 3.5824 5.2938 -0.0005 9 6 4.9571 5.4871 -0.0005 10 8 5.4648 6.7442 0.0001 11 6 4.5271 7.8225 0.0000 12 6 5.8220 4.3809 0.0000 13 6 7.2861 4.5842 -0.0005 14 6 8.1056 3.9154 0.9242 15 7 9.4047 4.1209 0.8933 16 6 9.9457 4.9531 -0.0019 17 6 11.3426 5.1470 -0.0024 18 1 11.9602 4.6266 0.7145 19 6 11.9289 6.0158 -0.9325 20 7 11.1815 6.6458 -1.7996 21 14 13.7791 6.2733 -0.9327 22 1 14.3934 5.4511 0.1405 23 1 14.3353 5.8666 -2.2481 24 1 14.0792 7.7073 -0.6903 25 7 9.1978 5.6064 -0.8966 26 6 7.8916 5.4508 -0.9259 27 6 5.2956 3.0916 -0.0049 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9905 3.8756 -0.0010 34 1 2.9194 6.1463 -0.0013 35 1 3.9012 7.7598 -0.8903 36 1 3.9006 7.7593 0.8898 37 1 5.0641 8.7710 0.0000 38 1 7.6755 3.2384 1.6475 39 1 11.5874 7.2470 -2.4437 40 1 7.2932 5.9820 -1.6511 41 1 5.9556 2.2367 -0.0087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243329988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:42 Heat of formation + Delta-G solvation = -74.053312 kcal Electronic energy + Delta-G solvation = -26609.120787 eV Core-core repulsion = 22646.816207 eV Total energy + Delta-G solvation = -3962.304580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75407 -41.09878 -40.40728 -38.37152 -37.50488 -35.83779 -33.99165 -33.67357 -32.64034 -31.43861 -30.79982 -28.42167 -27.86461 -25.37624 -24.71642 -24.33443 -23.41040 -22.62662 -21.64962 -19.82662 -19.12314 -18.82743 -18.03432 -17.85857 -17.56444 -17.06768 -16.79395 -16.57775 -16.18348 -15.88770 -15.15478 -15.00473 -14.95655 -14.68551 -14.56530 -14.49541 -13.95254 -13.69008 -13.56576 -13.49753 -13.09737 -12.93999 -12.89454 -12.85637 -12.70900 -12.48721 -12.09326 -12.00291 -11.91363 -11.66195 -11.51633 -11.37370 -11.13855 -10.99647 -10.42462 -9.70097 -9.38854 -8.97042 -8.46032 -6.74307 -0.28006 0.11367 0.80149 1.05720 1.39536 1.45825 1.54879 1.57300 1.62194 2.18963 2.36340 2.66037 2.80466 3.67282 3.74947 3.79941 3.93454 3.95519 4.03527 4.04100 4.10885 4.18466 4.22242 4.37423 4.38465 4.43274 4.45480 4.57839 4.75699 4.79148 4.90581 4.96427 4.97790 5.06499 5.12034 5.19543 5.24168 5.27625 5.41827 5.46742 5.66739 5.77749 6.11323 6.46323 6.48972 6.57549 6.70023 7.14499 8.18148 8.32419 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.002776 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.161707 B =10085.659911 C =11267.532335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 O -0.350 6.350 4 C 0.518 3.482 5 O -0.546 6.546 6 C -0.177 4.177 7 C -0.017 4.017 8 C -0.207 4.207 9 C 0.161 3.839 10 O -0.327 6.327 11 C 0.013 3.987 12 C -0.053 4.053 13 C -0.298 4.298 14 C 0.170 3.830 15 N -0.621 5.621 16 C 0.356 3.644 17 C -0.425 4.425 18 H 0.091 0.909 19 C 0.021 3.979 20 N -0.738 5.738 21 Si 1.002 2.998 22 H -0.256 1.256 23 H -0.260 1.260 24 H -0.259 1.259 25 N -0.538 5.538 26 C 0.180 3.820 27 C -0.027 4.027 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.170 0.830 34 H 0.174 0.826 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.154 0.846 39 H 0.287 0.713 40 H 0.141 0.859 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.551 -1.103 0.951 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.267 6.267 4 C 0.366 3.634 5 O -0.438 6.438 6 C -0.179 4.179 7 C -0.035 4.035 8 C -0.225 4.225 9 C 0.114 3.886 10 O -0.239 6.239 11 C -0.081 4.081 12 C -0.055 4.055 13 C -0.308 4.308 14 C -0.003 4.003 15 N -0.340 5.340 16 C 0.121 3.879 17 C -0.460 4.460 18 H 0.109 0.891 19 C -0.203 4.203 20 N -0.359 5.359 21 Si 0.821 3.179 22 H -0.179 1.179 23 H -0.185 1.185 24 H -0.183 1.183 25 N -0.255 5.255 26 C 0.005 3.995 27 C -0.046 4.046 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.187 0.813 34 H 0.191 0.809 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.171 0.829 39 H 0.098 0.902 40 H 0.159 0.841 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.058 -1.009 0.758 20.098 hybrid contribution -0.107 -0.307 -0.034 0.327 sum -20.165 -1.316 0.724 20.221 Atomic orbital electron populations 1.21819 0.89825 1.04450 1.03958 1.23341 0.97346 0.78974 1.02503 1.86522 1.22419 1.33787 1.83934 1.21194 0.80931 0.89624 0.71672 1.90823 1.61276 1.43600 1.48140 1.18862 0.93129 0.90570 1.15324 1.21449 1.00887 0.89753 0.91423 1.21425 0.92403 0.99642 1.09076 1.19645 0.92283 0.84346 0.92361 1.86170 1.37836 1.12966 1.86959 1.23461 0.93777 0.87672 1.03174 1.17787 0.90943 0.90792 1.06015 1.19690 0.93088 1.11313 1.06680 1.23130 0.89189 0.93667 0.94286 1.68638 1.13438 1.23637 1.28293 1.20347 0.95493 0.86651 0.85417 1.19732 0.89870 1.21819 1.14553 0.89134 1.27146 1.06425 0.93499 0.93248 1.70198 1.39273 1.15923 1.10550 0.84871 0.73984 0.79388 0.79701 1.17927 1.18456 1.18327 1.69304 1.04965 1.26063 1.25175 1.23244 0.91514 0.91023 0.93685 1.21065 0.93726 0.95628 0.94202 0.90998 0.88226 0.90949 0.91563 0.91461 0.81271 0.80889 0.90331 0.90539 0.87610 0.82887 0.90226 0.84139 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 10.29 71.98 0.74 -0.69 16 2 C 0.05 0.91 6.20 71.98 0.45 1.36 16 3 O -0.35 -7.87 9.45 -56.46 -0.53 -8.40 16 4 C 0.52 15.03 7.89 70.27 0.55 15.59 16 5 O -0.55 -19.38 16.12 19.86 0.32 -19.06 16 6 C -0.18 -5.05 5.87 -20.12 -0.12 -5.17 16 7 C -0.02 -0.36 9.60 22.58 0.22 -0.15 16 8 C -0.21 -4.43 9.01 22.29 0.20 -4.23 16 9 C 0.16 4.89 6.63 22.94 0.15 5.05 16 10 O -0.33 -10.17 8.90 -88.83 -0.79 -10.96 16 11 C 0.01 0.24 9.81 113.37 1.11 1.35 16 12 C -0.05 -1.96 5.52 -19.97 -0.11 -2.07 16 13 C -0.30 -13.70 5.31 -19.64 -0.10 -13.81 16 14 C 0.17 8.28 10.86 85.28 0.93 9.20 16 15 N -0.62 -34.99 10.33 -193.16 -2.00 -36.99 16 16 C 0.36 21.25 7.35 134.88 0.99 22.25 16 17 C -0.43 -24.37 9.35 23.41 0.22 -24.15 16 18 H 0.09 5.02 7.85 -2.91 -0.02 5.00 16 19 C 0.02 1.09 5.50 85.33 0.47 1.56 16 20 N -0.74 -39.55 11.40 21.85 0.25 -39.30 16 21 Si 1.00 38.11 29.56 68.60 2.03 40.14 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 23 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 24 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 25 N -0.54 -31.25 7.82 -193.15 -1.51 -32.76 16 26 C 0.18 9.08 10.10 85.28 0.86 9.94 16 27 C -0.03 -0.94 9.09 22.80 0.21 -0.73 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.17 2.45 7.59 -2.91 -0.02 2.42 16 34 H 0.17 2.28 6.27 -2.91 -0.02 2.26 16 35 H 0.08 1.07 7.65 -2.38 -0.02 1.05 16 36 H 0.08 1.06 7.65 -2.38 -0.02 1.04 16 37 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.15 6.46 8.06 -2.91 -0.02 6.43 16 39 H 0.29 13.55 8.29 -92.70 -0.77 12.78 16 40 H 0.14 6.47 7.76 -2.91 -0.02 6.45 16 41 H 0.12 4.54 7.63 -2.91 -0.02 4.51 16 Total: -1.00 -75.71 360.88 5.60 -70.11 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 1.07 Total: 21.94 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 6.76 Total: 15.28 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -3.26 Total: -109.05 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.00 Total: -38.42 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -75.71 5.60 -70.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243329988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.940 kcal (2) G-P(sol) polarization free energy of solvation -75.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds