Wall clock time and date at job start Tue Mar 31 2020 16:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.46816 * 2 1 4 4 C 1.34756 * 117.00033 * 180.02562 * 3 2 1 5 5 O 1.21512 * 120.00064 * 359.97438 * 4 3 2 6 6 C 1.47423 * 120.00114 * 180.02562 * 4 3 2 7 7 C 1.39874 * 121.01320 * 354.40921 * 6 4 3 8 8 N 1.32149 * 119.00314 * 180.02562 * 7 6 4 9 9 C 1.31988 * 121.24441 * 0.02562 * 8 7 6 10 10 C 1.50696 * 118.86630 * 179.97438 * 9 8 7 11 11 N 1.31627 * 122.26820 * 359.72210 * 9 8 7 12 12 C 1.33160 * 120.82778 * 0.54492 * 11 9 8 13 13 C 1.47865 * 120.65830 * 179.75569 * 12 11 9 14 14 C 1.39520 * 120.18368 * 95.14311 * 13 12 11 15 15 C 1.37896 * 119.93316 * 179.97438 * 14 13 12 16 16 C 1.38529 * 120.30037 * 359.97438 * 15 14 13 17 17 C 1.38065 * 120.37217 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.06387 * 0.02562 * 17 16 15 19 19 O 1.35580 * 120.14805 * 179.97438 * 18 17 16 20 20 C 1.34802 * 117.00314 * 6.13483 * 19 18 17 21 21 H 1.07999 * 119.99785 * 4.93301 * 20 19 18 22 22 C 1.38682 * 120.00014 * 184.94009 * 20 19 18 23 23 N 1.31534 * 120.00072 * 184.94400 * 22 20 19 24 24 Si 1.86800 * 120.00109 * 4.94524 * 22 20 19 25 25 H 1.48507 * 109.47143 * 94.81659 * 24 22 20 26 26 H 1.48497 * 109.47103 * 214.81944 * 24 22 20 27 27 H 1.48505 * 109.46989 * 334.82009 * 24 22 20 28 28 H 1.09004 * 109.47095 * 299.99727 * 1 2 3 29 29 H 1.08994 * 109.47178 * 60.00255 * 1 2 3 30 30 H 1.09000 * 109.46807 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47382 * 240.00142 * 2 1 3 32 32 H 1.08994 * 109.47178 * 119.99745 * 2 1 3 33 33 H 1.07999 * 120.49484 * 0.05678 * 7 6 4 34 34 H 1.09003 * 109.47588 * 94.98795 * 10 9 8 35 35 H 1.09000 * 109.47268 * 214.98813 * 10 9 8 36 36 H 1.09005 * 109.47289 * 334.99081 * 10 9 8 37 37 H 1.08009 * 120.03825 * 359.95825 * 14 13 12 38 38 H 1.07997 * 119.85278 * 179.97438 * 15 14 13 39 39 H 1.07997 * 119.81178 * 180.02562 * 16 15 14 40 40 H 1.07999 * 119.96571 * 179.74515 * 17 16 15 41 41 H 0.97002 * 119.99715 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3499 1.5456 -0.0005 5 8 4.0901 0.5820 -0.0005 6 6 3.9133 2.9079 0.0000 7 6 3.0862 4.0300 -0.1157 8 7 3.6336 5.2327 -0.1113 9 6 4.9394 5.3902 -0.0006 10 6 5.5065 6.7864 -0.0021 11 7 5.7628 4.3700 0.1159 12 6 5.3046 3.1197 0.1160 13 6 6.2336 1.9762 0.2418 14 6 6.4794 1.4062 1.4913 15 6 7.3463 0.3396 1.6025 16 6 7.9751 -0.1702 0.4783 17 6 7.7401 0.3836 -0.7644 18 6 6.8704 1.4575 -0.8940 19 8 6.6389 2.0030 -2.1134 20 6 7.1835 1.3784 -3.1767 21 1 7.7058 0.4425 -3.0439 22 6 7.0731 1.9377 -4.4409 23 7 7.5184 1.2826 -5.4910 24 14 6.2921 3.6214 -4.6524 25 1 7.3529 4.6606 -4.6685 26 1 5.5407 3.6611 -5.9327 27 1 5.3620 3.8808 -3.5242 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0162 3.9150 -0.2068 34 1 5.6347 7.1277 1.0251 35 1 6.4720 6.7858 -0.5080 36 1 4.8229 7.4557 -0.5246 37 1 5.9914 1.8001 2.3706 38 1 7.5359 -0.1003 2.5704 39 1 8.6522 -1.0060 0.5744 40 1 8.2370 -0.0164 -1.6359 41 1 7.4415 1.6741 -6.3752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:44 Heat of formation + Delta-G solvation = -32.811414 kcal Electronic energy + Delta-G solvation = -28262.438634 eV Core-core repulsion = 24301.922437 eV Total energy + Delta-G solvation = -3960.516197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.20164 -39.81653 -39.11254 -36.72257 -36.28329 -33.94179 -33.51408 -32.42455 -31.71507 -30.09173 -29.14372 -28.88054 -25.38031 -24.59663 -24.21088 -22.96192 -21.58969 -21.23039 -20.79981 -18.24344 -17.91835 -17.51552 -17.27657 -16.48859 -16.36433 -16.06541 -15.27218 -14.83344 -14.62345 -14.04189 -13.98579 -13.82635 -13.76439 -13.75118 -13.27604 -12.94041 -12.85108 -12.60246 -12.39443 -12.34577 -12.28150 -11.93403 -11.74742 -11.47555 -11.41013 -11.08610 -10.93635 -10.86492 -10.48408 -10.45379 -10.25536 -10.20593 -9.54025 -9.36756 -9.15273 -8.91233 -8.16242 -7.38380 -6.46552 -4.11886 0.45476 1.13983 1.93598 2.29312 2.62789 2.70664 3.16170 3.20155 3.34503 3.79068 3.94208 4.06694 4.18604 4.34000 4.62583 4.70979 4.76058 4.87307 4.92628 5.02880 5.06342 5.19860 5.22918 5.42823 5.50992 5.53418 5.61950 5.68550 5.71786 5.82692 5.84185 5.86653 5.99236 6.19121 6.37192 6.45667 6.48830 6.65713 6.98323 7.00732 7.11680 7.26126 7.55608 7.73963 7.91760 7.98323 8.12870 8.88869 9.50561 10.61050 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.008084 B = 0.005888 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3462.974726 B = 4753.898583 C = 5232.850918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.361 6.361 4 C 0.514 3.486 5 O -0.463 6.463 6 C -0.232 4.232 7 C 0.206 3.794 8 N -0.536 5.536 9 C 0.342 3.658 10 C -0.088 4.088 11 N -0.507 5.507 12 C 0.326 3.674 13 C -0.127 4.127 14 C -0.040 4.040 15 C -0.200 4.200 16 C -0.062 4.062 17 C -0.214 4.214 18 C 0.196 3.804 19 O -0.212 6.212 20 C -0.386 4.386 21 H 0.108 0.892 22 C 0.068 3.932 23 N -0.875 5.875 24 Si 0.899 3.101 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.266 1.266 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.181 0.819 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.222 3.058 12.752 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.279 6.279 4 C 0.355 3.645 5 O -0.348 6.348 6 C -0.238 4.238 7 C 0.039 3.961 8 N -0.251 5.251 9 C 0.077 3.923 10 C -0.146 4.146 11 N -0.221 5.221 12 C 0.180 3.820 13 C -0.129 4.129 14 C -0.059 4.059 15 C -0.219 4.219 16 C -0.081 4.081 17 C -0.233 4.233 18 C 0.143 3.857 19 O -0.116 6.116 20 C -0.462 4.462 21 H 0.126 0.874 22 C -0.136 4.136 23 N -0.513 5.513 24 Si 0.725 3.275 25 H -0.197 1.197 26 H -0.205 1.205 27 H -0.190 1.190 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.198 0.802 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.154 0.846 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.716 3.891 12.409 16.234 hybrid contribution -0.602 -0.501 -0.435 0.896 sum -10.319 3.390 11.975 16.167 Atomic orbital electron populations 1.21801 0.92715 1.02899 1.03392 1.23012 0.95042 0.79961 1.02968 1.86482 1.23817 1.32602 1.85026 1.20392 0.80678 0.89132 0.74306 1.90970 1.59560 1.41411 1.42856 1.20921 0.95819 0.93230 1.13850 1.23539 1.00812 0.86120 0.85637 1.68287 1.13972 1.25744 1.17054 1.23566 0.85589 0.96426 0.86767 1.20655 1.02031 0.87955 1.04005 1.68702 1.39256 0.98475 1.15674 1.20205 0.88877 0.91071 0.81845 1.17125 1.04385 0.98343 0.93079 1.20376 0.96621 0.95097 0.93783 1.20457 1.03083 1.00308 0.98051 1.20872 0.97283 0.97739 0.92193 1.21165 1.03513 1.00045 0.98620 1.18778 0.91290 0.91141 0.84528 1.83565 1.65980 1.50122 1.11947 1.20757 1.35896 1.06314 0.83199 0.87426 1.24408 0.96362 0.99030 0.93785 1.69632 1.44768 1.38053 0.98798 0.86259 0.80025 0.83290 0.77970 1.19658 1.20515 1.18993 0.91602 0.91451 0.90265 0.90900 0.91144 0.80243 0.89209 0.89124 0.89367 0.87366 0.87056 0.86947 0.84581 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 37.16 0.38 -0.87 16 2 C 0.06 0.76 6.20 37.16 0.23 0.99 16 3 O -0.36 -5.26 9.59 -40.64 -0.39 -5.65 16 4 C 0.51 9.26 7.87 34.47 0.27 9.53 16 5 O -0.46 -9.58 13.80 -19.28 -0.27 -9.85 16 6 C -0.23 -4.27 5.93 -104.42 -0.62 -4.89 16 7 C 0.21 3.22 10.90 -16.80 -0.18 3.04 16 8 N -0.54 -8.70 10.30 -10.44 -0.11 -8.81 16 9 C 0.34 5.77 7.64 -157.17 -1.20 4.57 16 10 C -0.09 -1.07 10.31 36.00 0.37 -0.70 16 11 N -0.51 -10.02 10.29 -7.04 -0.07 -10.09 16 12 C 0.33 6.70 5.79 -82.22 -0.48 6.22 16 13 C -0.13 -2.74 3.43 -104.76 -0.36 -3.10 16 14 C -0.04 -0.74 9.22 -39.23 -0.36 -1.10 16 15 C -0.20 -3.49 10.03 -39.60 -0.40 -3.89 16 16 C -0.06 -1.16 10.03 -39.54 -0.40 -1.56 16 17 C -0.21 -4.78 9.12 -39.44 -0.36 -5.14 16 18 C 0.20 4.78 6.47 -38.65 -0.25 4.53 16 19 O -0.21 -5.81 8.05 0.65 0.01 -5.80 16 20 C -0.39 -11.10 9.90 30.90 0.31 -10.79 16 21 H 0.11 3.14 5.53 -52.49 -0.29 2.85 16 22 C 0.07 1.94 5.49 -17.52 -0.10 1.84 16 23 N -0.87 -25.49 13.96 55.48 0.77 -24.72 16 24 Si 0.90 22.56 28.62 -169.99 -4.87 17.69 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.92 7.11 56.52 0.40 -6.51 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.18 2.14 7.72 -52.49 -0.41 1.74 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 40 H 0.14 3.13 5.72 -52.49 -0.30 2.83 16 41 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -33.52 361.12 -7.40 -40.92 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.78 Total: 2.19 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -3.14 Total: -1.33 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.59 Total: -43.61 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.65 Total: -21.30 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.87 Total: 17.69 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.52 -7.40 -40.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.109 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds