Wall clock time and date at job start Tue Mar 31 2020 16:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.46816 * 2 1 4 4 C 1.34756 * 117.00033 * 180.02562 * 3 2 1 5 5 O 1.21512 * 120.00064 * 359.97438 * 4 3 2 6 6 C 1.47423 * 120.00114 * 180.02562 * 4 3 2 7 7 C 1.39874 * 121.01320 * 354.40921 * 6 4 3 8 8 N 1.32149 * 119.00314 * 180.02562 * 7 6 4 9 9 C 1.31988 * 121.24441 * 0.02562 * 8 7 6 10 10 C 1.50696 * 118.86630 * 179.97438 * 9 8 7 11 11 N 1.31627 * 122.26820 * 359.72210 * 9 8 7 12 12 C 1.33160 * 120.82778 * 0.54492 * 11 9 8 13 13 C 1.47865 * 120.65830 * 179.75569 * 12 11 9 14 14 C 1.39520 * 120.18368 * 95.14311 * 13 12 11 15 15 C 1.37896 * 119.93316 * 179.97438 * 14 13 12 16 16 C 1.38529 * 120.30037 * 359.97438 * 15 14 13 17 17 C 1.38065 * 120.37217 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.06387 * 0.02562 * 17 16 15 19 19 O 1.35580 * 120.14805 * 179.97438 * 18 17 16 20 20 C 1.34802 * 117.00314 * 6.13483 * 19 18 17 21 21 H 1.07999 * 119.99785 * 4.93301 * 20 19 18 22 22 C 1.38682 * 120.00014 * 184.94009 * 20 19 18 23 23 N 1.31534 * 120.00072 * 184.94400 * 22 20 19 24 24 Si 1.86800 * 120.00109 * 4.94524 * 22 20 19 25 25 H 1.48507 * 109.47143 * 94.81659 * 24 22 20 26 26 H 1.48497 * 109.47103 * 214.81944 * 24 22 20 27 27 H 1.48505 * 109.46989 * 334.82009 * 24 22 20 28 28 H 1.09004 * 109.47095 * 299.99727 * 1 2 3 29 29 H 1.08994 * 109.47178 * 60.00255 * 1 2 3 30 30 H 1.09000 * 109.46807 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47382 * 240.00142 * 2 1 3 32 32 H 1.08994 * 109.47178 * 119.99745 * 2 1 3 33 33 H 1.07999 * 120.49484 * 0.05678 * 7 6 4 34 34 H 1.09003 * 109.47588 * 94.98795 * 10 9 8 35 35 H 1.09000 * 109.47268 * 214.98813 * 10 9 8 36 36 H 1.09005 * 109.47289 * 334.99081 * 10 9 8 37 37 H 1.08009 * 120.03825 * 359.95825 * 14 13 12 38 38 H 1.07997 * 119.85278 * 179.97438 * 15 14 13 39 39 H 1.07997 * 119.81178 * 180.02562 * 16 15 14 40 40 H 1.07999 * 119.96571 * 179.74515 * 17 16 15 41 41 H 0.97002 * 119.99715 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3499 1.5456 -0.0005 5 8 4.0901 0.5820 -0.0005 6 6 3.9133 2.9079 0.0000 7 6 3.0862 4.0300 -0.1157 8 7 3.6336 5.2327 -0.1113 9 6 4.9394 5.3902 -0.0006 10 6 5.5065 6.7864 -0.0021 11 7 5.7628 4.3700 0.1159 12 6 5.3046 3.1197 0.1160 13 6 6.2336 1.9762 0.2418 14 6 6.4794 1.4062 1.4913 15 6 7.3463 0.3396 1.6025 16 6 7.9751 -0.1702 0.4783 17 6 7.7401 0.3836 -0.7644 18 6 6.8704 1.4575 -0.8940 19 8 6.6389 2.0030 -2.1134 20 6 7.1835 1.3784 -3.1767 21 1 7.7058 0.4425 -3.0439 22 6 7.0731 1.9377 -4.4409 23 7 7.5184 1.2826 -5.4910 24 14 6.2921 3.6214 -4.6524 25 1 7.3529 4.6606 -4.6685 26 1 5.5407 3.6611 -5.9327 27 1 5.3620 3.8808 -3.5242 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0162 3.9150 -0.2068 34 1 5.6347 7.1277 1.0251 35 1 6.4720 6.7858 -0.5080 36 1 4.8229 7.4557 -0.5246 37 1 5.9914 1.8001 2.3706 38 1 7.5359 -0.1003 2.5704 39 1 8.6522 -1.0060 0.5744 40 1 8.2370 -0.0164 -1.6359 41 1 7.4415 1.6741 -6.3752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243580571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:43 Heat of formation + Delta-G solvation = -53.257516 kcal Electronic energy + Delta-G solvation = -28263.325244 eV Core-core repulsion = 24301.922437 eV Total energy + Delta-G solvation = -3961.402807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.55295 -41.11256 -40.83534 -38.38053 -37.64967 -35.32688 -34.79073 -34.52094 -32.62035 -31.59161 -30.79768 -30.03261 -27.39032 -26.02196 -25.37725 -24.03280 -23.21543 -22.68991 -22.20195 -19.92976 -19.57346 -19.18978 -18.59724 -17.73419 -17.68944 -17.48426 -16.80245 -16.46351 -16.05175 -15.79069 -15.59313 -15.47691 -15.07290 -14.97358 -14.52455 -14.41451 -14.29023 -14.22331 -13.63638 -13.53480 -13.32288 -13.19836 -12.92487 -12.88903 -12.75336 -12.65337 -12.54468 -12.50723 -12.16258 -11.87987 -11.61130 -11.54884 -11.47209 -10.99917 -10.70195 -10.53024 -9.73655 -9.11437 -8.59176 -6.28931 -0.88998 -0.21713 0.35480 0.65339 1.15137 1.19640 1.33034 1.34103 1.42835 2.14873 2.45595 2.61979 2.73725 2.80147 2.93794 2.99946 3.32971 3.49662 3.69980 3.99354 4.01120 4.04117 4.08838 4.20532 4.31254 4.35560 4.51595 4.55409 4.65061 4.72968 4.79724 4.82400 4.84605 4.94145 5.07102 5.09585 5.22762 5.31506 5.35187 5.49768 5.61884 5.66332 5.68359 5.82884 6.15503 6.59245 6.75675 6.80227 7.50594 8.52919 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.008084 B = 0.005888 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3462.974726 B = 4753.898583 C = 5232.850918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 O -0.350 6.350 4 C 0.517 3.483 5 O -0.500 6.500 6 C -0.252 4.252 7 C 0.219 3.781 8 N -0.533 5.533 9 C 0.334 3.666 10 C -0.087 4.087 11 N -0.535 5.535 12 C 0.299 3.701 13 C -0.123 4.123 14 C -0.046 4.046 15 C -0.174 4.174 16 C -0.062 4.062 17 C -0.235 4.235 18 C 0.155 3.845 19 O -0.241 6.241 20 C -0.394 4.394 21 H 0.085 0.915 22 C 0.019 3.981 23 N -0.915 5.915 24 Si 0.958 3.042 25 H -0.261 1.261 26 H -0.261 1.261 27 H -0.284 1.284 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.218 0.782 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.115 0.885 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.067 4.177 15.370 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.019 4.019 3 O -0.268 6.268 4 C 0.360 3.640 5 O -0.388 6.388 6 C -0.258 4.258 7 C 0.052 3.948 8 N -0.247 5.247 9 C 0.069 3.931 10 C -0.145 4.145 11 N -0.249 5.249 12 C 0.154 3.846 13 C -0.125 4.125 14 C -0.065 4.065 15 C -0.193 4.193 16 C -0.080 4.080 17 C -0.254 4.254 18 C 0.105 3.895 19 O -0.148 6.148 20 C -0.470 4.470 21 H 0.102 0.898 22 C -0.180 4.180 23 N -0.555 5.555 24 Si 0.782 3.218 25 H -0.185 1.185 26 H -0.185 1.185 27 H -0.209 1.209 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.235 0.765 34 H 0.136 0.864 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.155 0.845 38 H 0.177 0.823 39 H 0.166 0.834 40 H 0.133 0.867 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.573 5.012 15.065 19.647 hybrid contribution -0.074 -0.946 -0.919 1.321 sum -11.647 4.066 14.146 18.770 Atomic orbital electron populations 1.21823 0.89475 1.04575 1.04020 1.23361 0.97460 0.78547 1.02517 1.86482 1.21755 1.34296 1.84222 1.20443 0.81503 0.88667 0.73390 1.90942 1.60603 1.42394 1.44853 1.21039 0.95436 0.94361 1.14962 1.24133 1.02143 0.85106 0.83462 1.68446 1.13639 1.25668 1.16994 1.24453 0.85849 0.97483 0.85282 1.20857 1.02016 0.85590 1.05993 1.68694 1.40402 0.98767 1.17063 1.20286 0.89780 0.91310 0.83244 1.17491 1.03427 0.98505 0.93091 1.20862 0.96733 0.95240 0.93686 1.21052 1.00216 0.98476 0.99513 1.21272 0.97546 0.98278 0.90909 1.21245 1.03924 1.00428 0.99786 1.19303 0.93164 0.92560 0.84466 1.83508 1.67788 1.51007 1.12523 1.20690 1.35831 1.06013 0.84465 0.89791 1.25082 0.97221 1.02218 0.93451 1.69699 1.46918 1.39626 0.99295 0.85397 0.79149 0.79596 0.77689 1.18527 1.18502 1.20936 0.90402 0.91336 0.88051 0.92401 0.90709 0.76547 0.86419 0.89434 0.87437 0.84459 0.82331 0.83378 0.86750 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 10.29 71.98 0.74 -1.27 16 2 C 0.05 1.24 6.20 71.98 0.45 1.68 16 3 O -0.35 -9.79 9.59 -56.67 -0.54 -10.33 16 4 C 0.52 18.53 7.87 70.24 0.55 19.09 16 5 O -0.50 -21.00 13.80 19.80 0.27 -20.73 16 6 C -0.25 -9.16 5.93 -19.73 -0.12 -9.27 16 7 C 0.22 6.45 10.90 85.04 0.93 7.38 16 8 N -0.53 -16.22 10.30 -186.95 -1.93 -18.15 16 9 C 0.33 10.80 7.64 138.74 1.06 11.86 16 10 C -0.09 -1.91 10.31 71.23 0.73 -1.18 16 11 N -0.53 -20.99 10.29 -176.17 -1.81 -22.80 16 12 C 0.30 12.34 5.79 42.22 0.24 12.58 16 13 C -0.12 -5.35 3.43 -19.95 -0.07 -5.42 16 14 C -0.05 -1.65 9.22 22.50 0.21 -1.44 16 15 C -0.17 -5.55 10.03 22.26 0.22 -5.33 16 16 C -0.06 -2.23 10.03 22.30 0.22 -2.00 16 17 C -0.23 -10.91 9.12 22.36 0.20 -10.70 16 18 C 0.16 7.89 6.47 22.87 0.15 8.03 16 19 O -0.24 -13.97 8.05 -20.58 -0.17 -14.13 16 20 C -0.39 -24.11 9.90 67.93 0.67 -23.44 16 21 H 0.08 5.34 5.53 -2.91 -0.02 5.33 16 22 C 0.02 1.16 5.49 84.84 0.47 1.63 16 23 N -0.91 -55.62 13.96 21.62 0.30 -55.32 16 24 Si 0.96 48.08 28.62 68.60 1.96 50.04 16 25 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.28 -14.93 7.11 99.48 0.71 -14.22 16 28 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.22 4.51 7.72 -2.91 -0.02 4.49 16 34 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 38 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 39 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 40 H 0.11 5.71 5.72 -2.91 -0.02 5.69 16 41 H 0.29 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -78.13 361.12 5.83 -72.31 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.07 Total: 16.92 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 6.66 Total: 2.20 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -3.44 Total: -96.27 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -0.44 Total: -45.20 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.96 Total: 50.04 kcal Total: -78.13 5.83 -72.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.049 kcal (2) G-P(sol) polarization free energy of solvation -78.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds