Wall clock time and date at job start Tue Mar 31 2020 16:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45202 * 109.47183 * 2 1 4 4 C 1.34643 * 116.99534 * 179.97438 * 3 2 1 5 5 O 1.21389 * 120.00427 * 0.02562 * 4 3 2 6 6 C 1.48352 * 119.99342 * 179.97438 * 4 3 2 7 7 C 1.39272 * 120.50548 * 180.28111 * 6 4 3 8 8 C 1.40022 * 118.14470 * 180.21676 * 7 6 4 9 9 C 1.48103 * 120.54059 * 179.78252 * 8 7 6 10 10 C 1.39401 * 120.17175 * 359.72948 * 9 8 7 11 11 C 1.37952 * 119.93729 * 180.02562 * 10 9 8 12 12 C 1.38487 * 120.28772 * 359.97438 * 11 10 9 13 13 C 1.38079 * 120.35123 * 0.02562 * 12 11 10 14 14 C 1.38786 * 120.05132 * 0.02562 * 13 12 11 15 15 O 1.35612 * 120.14242 * 180.02562 * 14 13 12 16 16 C 1.34802 * 116.99935 * 354.39851 * 15 14 13 17 17 H 1.08005 * 120.00088 * 5.06297 * 16 15 14 18 18 C 1.38681 * 120.00173 * 185.06219 * 16 15 14 19 19 N 1.31540 * 119.99581 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00079 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47273 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46815 * 120.00314 * 20 18 16 23 23 H 1.48501 * 109.46834 * 239.99873 * 20 18 16 24 24 N 1.33095 * 118.92075 * 359.51779 * 8 7 6 25 25 C 1.31748 * 120.89918 * 0.24249 * 24 8 7 26 26 C 1.50700 * 118.96732 * 180.02562 * 25 24 8 27 27 N 1.31603 * 122.06779 * 0.02562 * 25 24 8 28 28 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46725 * 300.00159 * 1 2 3 30 30 H 1.08996 * 109.46885 * 59.99842 * 1 2 3 31 31 H 1.08999 * 109.46725 * 239.99841 * 2 1 3 32 32 H 1.09004 * 109.46724 * 119.99884 * 2 1 3 33 33 H 1.08004 * 120.92873 * 359.97438 * 7 6 4 34 34 H 1.07995 * 120.02920 * 0.03299 * 10 9 8 35 35 H 1.07999 * 119.85435 * 179.97438 * 11 10 9 36 36 H 1.08003 * 119.82628 * 179.74767 * 12 11 10 37 37 H 1.07993 * 119.97378 * 179.97438 * 13 12 11 38 38 H 0.97004 * 119.99876 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.47156 * 90.00727 * 26 25 24 40 40 H 1.09004 * 109.47122 * 210.00289 * 26 25 24 41 41 H 1.09000 * 109.47086 * 330.00475 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3489 1.5453 0.0005 5 8 4.0884 0.5826 0.0005 6 6 3.9159 2.9162 0.0000 7 6 5.2950 3.1108 -0.0053 8 6 5.7764 4.4257 -0.0009 9 6 7.2330 4.6938 -0.0014 10 6 8.1402 3.6354 -0.0006 11 6 9.4959 3.8907 -0.0005 12 6 9.9610 5.1952 -0.0018 13 6 9.0729 6.2525 -0.0026 14 6 7.7060 6.0121 -0.0016 15 8 6.8322 7.0492 -0.0030 16 6 7.3521 8.2876 0.1120 17 1 8.4233 8.4253 0.1174 18 6 6.5114 9.3850 0.2233 19 7 5.2068 9.2172 0.2172 20 14 7.2318 11.1010 0.3834 21 1 8.7144 11.0192 0.3647 22 1 6.7684 11.9401 -0.7509 23 1 6.7851 11.7080 1.6629 24 7 4.9038 5.4306 -0.0017 25 6 3.6066 5.2003 -0.0017 26 6 2.6574 6.3708 -0.0032 27 7 3.1136 3.9801 -0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 5.9741 2.2711 -0.0088 34 1 7.7820 2.6166 -0.0001 35 1 10.1976 3.0698 0.0005 36 1 11.0239 5.3865 0.0024 37 1 9.4423 7.2673 -0.0032 38 1 4.6187 9.9847 0.2954 39 1 2.4287 6.6519 -1.0312 40 1 1.7372 6.0931 0.5108 41 1 3.1198 7.2142 0.5098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243584963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:26 Heat of formation + Delta-G solvation = -29.322486 kcal Electronic energy + Delta-G solvation = -27136.338888 eV Core-core repulsion = 23175.973982 eV Total energy + Delta-G solvation = -3960.364906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.95119 -39.97675 -38.95760 -36.69827 -36.52257 -33.76399 -33.07317 -32.41351 -31.72890 -29.98764 -28.91689 -27.91119 -25.95446 -25.31324 -23.75113 -22.85993 -21.56816 -20.97205 -20.62028 -18.33193 -18.10813 -17.47731 -16.72281 -16.66569 -16.17601 -15.23589 -15.11278 -14.87019 -14.61100 -14.27372 -14.08957 -13.93615 -13.67546 -13.54720 -13.17776 -12.93844 -12.73946 -12.55688 -12.22789 -12.03720 -11.80234 -11.76942 -11.67002 -11.50624 -11.02550 -10.95877 -10.89676 -10.81142 -10.64461 -10.53650 -10.38404 -10.27221 -9.51989 -9.23280 -8.94815 -8.62349 -8.09478 -7.27252 -6.56314 -4.09685 0.72234 1.03136 2.20034 2.29475 2.45145 2.70505 3.06241 3.07802 3.12422 3.85967 4.11719 4.15762 4.46805 4.59314 4.68151 4.75700 4.81663 4.98414 5.06950 5.08641 5.17593 5.35718 5.39277 5.51248 5.59687 5.63450 5.74195 5.81728 5.86206 5.98700 6.11833 6.17941 6.22405 6.29448 6.48441 6.57213 6.68089 6.90473 6.94001 7.08174 7.18834 7.23934 7.35873 7.65237 7.73403 7.85533 8.66677 8.86268 9.58066 10.57333 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.003661 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.176791 B = 7646.753818 C = 9642.369171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.331 6.331 4 C 0.532 3.468 5 O -0.499 6.499 6 C 0.133 3.867 7 C -0.186 4.186 8 C 0.247 3.753 9 C -0.163 4.163 10 C -0.037 4.037 11 C -0.225 4.225 12 C -0.052 4.052 13 C -0.236 4.236 14 C 0.180 3.820 15 O -0.113 6.113 16 C -0.397 4.397 17 H 0.093 0.907 18 C 0.048 3.952 19 N -0.828 5.828 20 Si 0.939 3.061 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.275 1.275 24 N -0.446 5.446 25 C 0.327 3.673 26 C -0.081 4.081 27 N -0.505 5.505 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.270 0.730 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 -10.748 -0.204 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.246 6.246 4 C 0.374 3.626 5 O -0.386 6.386 6 C -0.011 4.011 7 C -0.209 4.209 8 C 0.102 3.898 9 C -0.166 4.166 10 C -0.057 4.057 11 C -0.244 4.244 12 C -0.071 4.071 13 C -0.256 4.256 14 C 0.120 3.880 15 O -0.010 6.010 16 C -0.473 4.473 17 H 0.110 0.890 18 C -0.160 4.160 19 N -0.459 5.459 20 Si 0.763 3.237 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 N -0.161 5.161 25 C 0.060 3.940 26 C -0.139 4.139 27 N -0.224 5.224 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.170 0.830 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.681 -10.126 -0.207 11.158 hybrid contribution 1.120 -0.104 0.044 1.126 sum -3.562 -10.230 -0.163 10.833 Atomic orbital electron populations 1.21791 0.92424 1.02775 1.03851 1.23106 0.95638 0.80223 1.02604 1.86698 1.22969 1.31796 1.83177 1.20832 0.80929 0.88379 0.72433 1.90816 1.60755 1.41341 1.45665 1.20013 0.90199 0.90707 1.00228 1.22689 0.95061 0.99650 1.03525 1.20199 0.93854 0.87170 0.88542 1.17365 0.88435 0.91435 1.19352 1.20757 0.92755 0.96793 0.95348 1.20481 0.94623 0.96324 1.12967 1.20917 0.98484 0.92549 0.95133 1.21170 0.92652 0.99989 1.11754 1.19294 0.89058 0.88171 0.91477 1.84211 1.31419 1.12506 1.72845 1.21578 0.93408 0.80524 1.51761 0.88972 1.25292 0.95203 0.99382 0.96151 1.70075 1.02114 1.31336 1.42381 0.85686 0.79138 0.80496 0.78360 1.19100 1.20068 1.20059 1.68774 1.02310 1.34516 1.10487 1.23379 0.89699 0.91026 0.89929 1.20574 0.95821 0.93746 1.03776 1.68204 1.40063 0.99149 1.14995 0.90288 0.91312 0.91310 0.91132 0.91128 0.82984 0.86421 0.87032 0.87115 0.85067 0.91990 0.90124 0.90743 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.62 6.19 37.16 0.23 0.85 16 3 O -0.33 -4.94 10.07 -40.34 -0.41 -5.34 16 4 C 0.53 8.88 7.97 34.89 0.28 9.15 16 5 O -0.50 -8.57 16.21 -19.18 -0.31 -8.88 16 6 C 0.13 2.45 6.79 -82.70 -0.56 1.89 16 7 C -0.19 -3.43 9.07 -38.53 -0.35 -3.78 16 8 C 0.25 5.25 6.77 -82.60 -0.56 4.69 16 9 C -0.16 -3.43 5.89 -104.73 -0.62 -4.05 16 10 C -0.04 -0.65 9.44 -39.25 -0.37 -1.02 16 11 C -0.22 -3.68 10.03 -39.59 -0.40 -4.07 16 12 C -0.05 -0.89 10.03 -39.55 -0.40 -1.29 16 13 C -0.24 -4.85 9.16 -39.44 -0.36 -5.21 16 14 C 0.18 4.19 6.65 -38.70 -0.26 3.93 16 15 O -0.11 -3.00 7.65 0.55 0.00 -3.00 16 16 C -0.40 -10.28 9.49 30.90 0.29 -9.98 16 17 H 0.09 2.22 5.21 -52.48 -0.27 1.95 16 18 C 0.05 1.20 5.49 -17.51 -0.10 1.11 16 19 N -0.83 -21.72 13.67 55.48 0.76 -20.96 16 20 Si 0.94 19.13 29.55 -169.99 -5.02 14.11 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 24 N -0.45 -10.25 8.20 -7.33 -0.06 -10.31 16 25 C 0.33 6.74 7.64 -157.40 -1.20 5.54 16 26 C -0.08 -1.45 10.31 36.01 0.37 -1.08 16 27 N -0.50 -9.79 10.13 -7.40 -0.08 -9.87 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.15 2.45 6.01 -52.48 -0.32 2.14 16 34 H 0.12 1.74 6.28 -52.49 -0.33 1.41 16 35 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 38 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.11 2.15 8.14 -51.93 -0.42 1.72 16 LS Contribution 360.70 15.07 5.44 5.44 Total: -1.00 -29.79 360.70 -7.87 -37.66 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.58 Total: 5.29 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -3.61 Total: -4.12 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.62 Total: -41.14 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.71 Total: -17.22 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.79 -7.87 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.337 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds