Wall clock time and date at job start Tue Mar 31 2020 16:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45202 * 109.47183 * 2 1 4 4 C 1.34643 * 116.99534 * 179.97438 * 3 2 1 5 5 O 1.21389 * 120.00427 * 0.02562 * 4 3 2 6 6 C 1.48352 * 119.99342 * 179.97438 * 4 3 2 7 7 C 1.39272 * 120.50548 * 180.28111 * 6 4 3 8 8 C 1.40022 * 118.14470 * 180.21676 * 7 6 4 9 9 C 1.48103 * 120.54059 * 179.78252 * 8 7 6 10 10 C 1.39401 * 120.17175 * 359.72948 * 9 8 7 11 11 C 1.37952 * 119.93729 * 180.02562 * 10 9 8 12 12 C 1.38487 * 120.28772 * 359.97438 * 11 10 9 13 13 C 1.38079 * 120.35123 * 0.02562 * 12 11 10 14 14 C 1.38786 * 120.05132 * 0.02562 * 13 12 11 15 15 O 1.35612 * 120.14242 * 180.02562 * 14 13 12 16 16 C 1.34802 * 116.99935 * 354.39851 * 15 14 13 17 17 H 1.08005 * 120.00088 * 5.06297 * 16 15 14 18 18 C 1.38681 * 120.00173 * 185.06219 * 16 15 14 19 19 N 1.31540 * 119.99581 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00079 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47273 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46815 * 120.00314 * 20 18 16 23 23 H 1.48501 * 109.46834 * 239.99873 * 20 18 16 24 24 N 1.33095 * 118.92075 * 359.51779 * 8 7 6 25 25 C 1.31748 * 120.89918 * 0.24249 * 24 8 7 26 26 C 1.50700 * 118.96732 * 180.02562 * 25 24 8 27 27 N 1.31603 * 122.06779 * 0.02562 * 25 24 8 28 28 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46725 * 300.00159 * 1 2 3 30 30 H 1.08996 * 109.46885 * 59.99842 * 1 2 3 31 31 H 1.08999 * 109.46725 * 239.99841 * 2 1 3 32 32 H 1.09004 * 109.46724 * 119.99884 * 2 1 3 33 33 H 1.08004 * 120.92873 * 359.97438 * 7 6 4 34 34 H 1.07995 * 120.02920 * 0.03299 * 10 9 8 35 35 H 1.07999 * 119.85435 * 179.97438 * 11 10 9 36 36 H 1.08003 * 119.82628 * 179.74767 * 12 11 10 37 37 H 1.07993 * 119.97378 * 179.97438 * 13 12 11 38 38 H 0.97004 * 119.99876 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.47156 * 90.00727 * 26 25 24 40 40 H 1.09004 * 109.47122 * 210.00289 * 26 25 24 41 41 H 1.09000 * 109.47086 * 330.00475 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3489 1.5453 0.0005 5 8 4.0884 0.5826 0.0005 6 6 3.9159 2.9162 0.0000 7 6 5.2950 3.1108 -0.0053 8 6 5.7764 4.4257 -0.0009 9 6 7.2330 4.6938 -0.0014 10 6 8.1402 3.6354 -0.0006 11 6 9.4959 3.8907 -0.0005 12 6 9.9610 5.1952 -0.0018 13 6 9.0729 6.2525 -0.0026 14 6 7.7060 6.0121 -0.0016 15 8 6.8322 7.0492 -0.0030 16 6 7.3521 8.2876 0.1120 17 1 8.4233 8.4253 0.1174 18 6 6.5114 9.3850 0.2233 19 7 5.2068 9.2172 0.2172 20 14 7.2318 11.1010 0.3834 21 1 8.7144 11.0192 0.3647 22 1 6.7684 11.9401 -0.7509 23 1 6.7851 11.7080 1.6629 24 7 4.9038 5.4306 -0.0017 25 6 3.6066 5.2003 -0.0017 26 6 2.6574 6.3708 -0.0032 27 7 3.1136 3.9801 -0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 5.9741 2.2711 -0.0088 34 1 7.7820 2.6166 -0.0001 35 1 10.1976 3.0698 0.0005 36 1 11.0239 5.3865 0.0024 37 1 9.4423 7.2673 -0.0032 38 1 4.6187 9.9847 0.2954 39 1 2.4287 6.6519 -1.0312 40 1 1.7372 6.0931 0.5108 41 1 3.1198 7.2142 0.5098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243584963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:24 Heat of formation + Delta-G solvation = -45.403034 kcal Electronic energy + Delta-G solvation = -27137.036193 eV Core-core repulsion = 23175.973982 eV Total energy + Delta-G solvation = -3961.062211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -42.40928 -41.31608 -40.54633 -38.12591 -37.88834 -35.29598 -34.56378 -34.20374 -32.55953 -31.49831 -30.47790 -29.40451 -27.50354 -26.92726 -25.14896 -23.91285 -22.99649 -22.49721 -22.01641 -19.79453 -19.68638 -19.08069 -17.99878 -17.79800 -17.75234 -16.72156 -16.59632 -16.31747 -16.20288 -15.87731 -15.43910 -15.27764 -15.09982 -14.98115 -14.46962 -14.30011 -14.13523 -13.63871 -13.63398 -13.47922 -13.16438 -13.11922 -12.97312 -12.59624 -12.54682 -12.46028 -12.34154 -12.13185 -12.09948 -11.93663 -11.79632 -11.58033 -11.21261 -10.75690 -10.72930 -10.19356 -9.58322 -8.89191 -8.35940 -6.00161 -0.75030 -0.49156 0.68487 0.79284 1.25476 1.30877 1.39758 1.46754 1.54853 2.20230 2.62982 2.72462 2.95822 2.96567 3.27345 3.32842 3.48062 3.71014 3.87093 4.00109 4.02320 4.04342 4.21390 4.31265 4.34333 4.40468 4.59120 4.65553 4.73084 4.74023 4.84459 4.91994 4.94986 5.01771 5.05996 5.14675 5.24410 5.30556 5.41232 5.56596 5.64935 5.73677 5.85761 6.07253 6.18836 6.43913 7.04455 7.11614 7.85910 8.81497 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.003661 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.176791 B = 7646.753818 C = 9642.369171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.340 6.340 4 C 0.539 3.461 5 O -0.503 6.503 6 C 0.126 3.874 7 C -0.174 4.174 8 C 0.228 3.772 9 C -0.178 4.178 10 C -0.037 4.037 11 C -0.202 4.202 12 C -0.042 4.042 13 C -0.258 4.258 14 C 0.148 3.852 15 O -0.159 6.159 16 C -0.426 4.426 17 H 0.097 0.903 18 C -0.005 4.005 19 N -0.875 5.875 20 Si 1.008 2.992 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.272 1.272 24 N -0.486 5.486 25 C 0.312 3.688 26 C -0.072 4.072 27 N -0.501 5.501 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.180 0.820 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.124 0.876 38 H 0.270 0.730 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -13.764 -0.206 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 O -0.255 6.255 4 C 0.381 3.619 5 O -0.391 6.391 6 C -0.019 4.019 7 C -0.197 4.197 8 C 0.083 3.917 9 C -0.181 4.181 10 C -0.056 4.056 11 C -0.220 4.220 12 C -0.061 4.061 13 C -0.277 4.277 14 C 0.091 3.909 15 O -0.059 6.059 16 C -0.502 4.502 17 H 0.114 0.886 18 C -0.208 4.208 19 N -0.509 5.509 20 Si 0.829 3.171 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.197 1.197 24 N -0.201 5.201 25 C 0.045 3.955 26 C -0.130 4.130 27 N -0.220 5.220 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.197 0.803 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.168 0.832 37 H 0.142 0.858 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.359 -13.192 -0.211 13.615 hybrid contribution 0.797 0.397 0.034 0.891 sum -2.562 -12.795 -0.177 13.050 Atomic orbital electron populations 1.21837 0.90250 1.04608 1.03615 1.23537 0.97322 0.78184 1.03413 1.86687 1.21656 1.34586 1.82539 1.20415 0.81676 0.87271 0.72514 1.90806 1.61081 1.41094 1.46115 1.20448 0.90525 0.91553 0.99345 1.22844 0.95579 0.99091 1.02189 1.20503 0.94056 0.88105 0.89052 1.17853 0.89264 0.91702 1.19307 1.21207 0.92952 0.97321 0.94151 1.21090 0.94814 0.97218 1.08902 1.21393 0.99979 0.92003 0.92692 1.21309 0.92233 1.01025 1.13123 1.19954 0.90293 0.88709 0.91894 1.84212 1.32518 1.12969 1.76236 1.21924 0.93871 0.81279 1.53105 0.88553 1.26333 0.95622 1.02988 0.95814 1.70212 1.03320 1.32219 1.45106 0.84675 0.78729 0.75475 0.78235 1.18068 1.19678 1.19737 1.68774 1.03519 1.36186 1.11637 1.23737 0.89508 0.92071 0.90216 1.20523 0.96129 0.92142 1.04183 1.68254 1.40112 0.98991 1.14633 0.87359 0.91554 0.91541 0.90319 0.90330 0.80266 0.83076 0.82367 0.83150 0.85836 0.92043 0.89401 0.88062 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.29 71.98 0.74 -1.22 16 2 C 0.05 0.92 6.19 71.98 0.45 1.37 16 3 O -0.34 -9.57 10.07 -55.52 -0.56 -10.13 16 4 C 0.54 17.09 7.97 70.52 0.56 17.65 16 5 O -0.50 -16.08 16.21 20.19 0.33 -15.76 16 6 C 0.13 4.56 6.79 41.87 0.28 4.84 16 7 C -0.17 -6.25 9.07 22.95 0.21 -6.05 16 8 C 0.23 9.84 6.77 42.01 0.28 10.12 16 9 C -0.18 -7.53 5.89 -19.94 -0.12 -7.65 16 10 C -0.04 -1.19 9.44 22.48 0.21 -0.98 16 11 C -0.20 -5.65 10.03 22.26 0.22 -5.42 16 12 C -0.04 -1.31 10.03 22.29 0.22 -1.09 16 13 C -0.26 -10.61 9.16 22.36 0.20 -10.40 16 14 C 0.15 7.14 6.65 22.84 0.15 7.29 16 15 O -0.16 -9.01 7.65 -20.94 -0.16 -9.17 16 16 C -0.43 -23.51 9.49 67.93 0.64 -22.87 16 17 H 0.10 4.94 5.21 -2.91 -0.02 4.92 16 18 C -0.01 -0.28 5.49 84.84 0.47 0.18 16 19 N -0.87 -49.24 13.67 21.62 0.30 -48.95 16 20 Si 1.01 41.10 29.55 68.60 2.03 43.13 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 24 N -0.49 -23.48 8.20 -177.10 -1.45 -24.94 16 25 C 0.31 13.37 7.64 138.82 1.06 14.43 16 26 C -0.07 -2.70 10.31 71.24 0.73 -1.97 16 27 N -0.50 -19.52 10.13 -177.33 -1.80 -21.32 16 28 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.18 5.26 6.01 -2.91 -0.02 5.24 16 34 H 0.15 3.77 6.28 -2.91 -0.02 3.75 16 35 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 36 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 37 H 0.12 5.16 5.64 -2.91 -0.02 5.14 16 38 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 39 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 41 H 0.08 3.44 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -70.34 360.70 6.09 -64.25 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 1.08 Total: 24.62 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 6.33 Total: -1.75 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -2.95 Total: -95.20 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.39 Total: -35.06 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -70.34 6.09 -64.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.848 kcal (2) G-P(sol) polarization free energy of solvation -70.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds