Wall clock time and date at job start Tue Mar 31 2020 16:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45197 * 109.47316 * 2 1 4 4 C 1.34738 * 116.99853 * 180.02562 * 3 2 1 5 5 O 1.21498 * 120.00482 * 359.97438 * 4 3 2 6 6 C 1.47523 * 119.99903 * 179.97438 * 4 3 2 7 7 C 1.40197 * 120.85612 * 353.77512 * 6 4 3 8 8 N 1.31893 * 119.02089 * 179.97438 * 7 6 4 9 9 C 1.32833 * 120.88708 * 0.02562 * 8 7 6 10 10 C 1.47956 * 119.05508 * 180.02562 * 9 8 7 11 11 C 1.39478 * 120.18168 * 179.70125 * 10 9 8 12 12 C 1.37905 * 119.93276 * 179.72308 * 11 10 9 13 13 C 1.38520 * 120.29835 * 0.58099 * 12 11 10 14 14 C 1.38061 * 120.36658 * 359.69688 * 13 12 11 15 15 C 1.38805 * 120.05641 * 359.97438 * 14 13 12 16 16 O 1.35582 * 120.14852 * 180.02562 * 15 14 13 17 17 C 1.34802 * 116.99881 * 5.69543 * 16 15 14 18 18 H 1.08000 * 120.00368 * 354.82258 * 17 16 15 19 19 C 1.38687 * 119.99983 * 174.82047 * 17 16 15 20 20 N 1.31528 * 120.00263 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99941 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47234 * 90.00215 * 21 19 17 23 23 H 1.48500 * 109.47020 * 209.99792 * 21 19 17 24 24 H 1.48500 * 109.47495 * 330.00188 * 21 19 17 25 25 N 1.32810 * 121.89467 * 0.02562 * 9 8 7 26 26 C 1.31913 * 120.89057 * 359.97438 * 25 9 8 27 27 C 1.50704 * 120.48899 * 180.02562 * 26 25 9 28 28 H 1.08994 * 109.46945 * 300.00296 * 1 2 3 29 29 H 1.08994 * 109.47056 * 60.00226 * 1 2 3 30 30 H 1.08997 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46985 * 239.99455 * 2 1 3 32 32 H 1.09002 * 109.46768 * 120.00354 * 2 1 3 33 33 H 1.08005 * 120.49063 * 359.71158 * 7 6 4 34 34 H 1.08005 * 120.03348 * 0.02562 * 11 10 9 35 35 H 1.08007 * 119.85307 * 180.27868 * 12 11 10 36 36 H 1.08000 * 119.81838 * 179.72079 * 13 12 11 37 37 H 1.07993 * 119.97314 * 180.02562 * 14 13 12 38 38 H 0.97002 * 120.00735 * 179.97438 * 20 19 17 39 39 H 1.08994 * 109.47511 * 263.18079 * 27 26 25 40 40 H 1.09002 * 109.46780 * 23.18423 * 27 26 25 41 41 H 1.09000 * 109.46947 * 143.17905 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0900 0.5819 -0.0005 6 6 3.9138 2.9086 -0.0011 7 6 3.0830 4.0303 -0.1317 8 7 3.6257 5.2324 -0.1271 9 6 4.9390 5.3873 -0.0017 10 6 5.5045 6.7545 -0.0012 11 6 6.8796 6.9445 0.1353 12 6 7.4018 8.2208 0.1294 13 6 6.5654 9.3175 0.0005 14 6 5.2020 9.1440 -0.1296 15 6 4.6610 7.8657 -0.1324 16 8 3.3223 7.6931 -0.2605 17 6 2.5833 8.7949 -0.4997 18 1 3.0498 9.7689 -0.4979 19 6 1.2240 8.6776 -0.7482 20 7 0.5030 9.7525 -0.9821 21 14 0.4172 6.9928 -0.7522 22 1 -0.0577 6.6681 0.6169 23 1 -0.7362 6.9985 -1.6876 24 1 1.4037 5.9724 -1.1889 25 7 5.7591 4.3501 0.1231 26 6 5.2940 3.1157 0.1277 27 6 6.2328 1.9454 0.2706 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5140 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0149 3.9117 -0.2387 34 1 7.5352 6.0927 0.2406 35 1 8.4672 8.3663 0.2306 36 1 6.9823 10.3138 0.0014 37 1 4.5558 10.0034 -0.2301 38 1 -0.4477 9.6706 -1.1563 39 1 6.4663 1.5444 -0.7157 40 1 7.1517 2.2740 0.7561 41 1 5.7593 1.1715 0.8747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585561.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:07 Heat of formation + Delta-G solvation = -28.905604 kcal Electronic energy + Delta-G solvation = -27396.141288 eV Core-core repulsion = 23435.794459 eV Total energy + Delta-G solvation = -3960.346829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 3.20 seconds Orbital eigenvalues (eV) -41.14045 -40.02986 -39.08285 -36.80632 -36.61772 -34.14064 -33.17484 -32.55431 -31.83102 -30.02425 -29.31298 -28.54563 -25.49221 -25.16715 -23.55072 -22.81536 -21.88056 -21.36458 -20.69303 -18.20995 -17.96374 -17.56154 -17.20769 -16.72987 -16.53197 -16.12071 -15.05196 -14.79075 -14.48401 -14.21403 -14.00216 -13.87450 -13.77864 -13.74583 -13.22401 -13.03486 -12.85372 -12.79694 -12.45921 -12.40817 -12.20935 -12.07746 -11.84869 -11.54035 -11.41636 -10.98612 -10.84579 -10.79455 -10.69241 -10.36354 -10.10380 -10.07514 -9.70935 -9.54437 -8.99212 -8.80220 -8.16253 -7.43991 -6.58382 -4.18276 0.31725 1.38613 1.88970 2.21253 2.51949 2.64574 3.22054 3.24497 3.47046 3.96330 4.03662 4.20685 4.32116 4.51783 4.55219 4.64368 4.67282 4.71631 4.78862 5.00658 5.03223 5.05762 5.32810 5.47607 5.55087 5.55446 5.60539 5.64576 5.68188 5.76227 5.82014 5.94025 6.02148 6.17849 6.32175 6.40153 6.54957 6.60498 6.95640 7.00671 7.15244 7.29426 7.46662 7.63106 7.67432 7.85595 8.42081 8.75943 9.40594 10.46324 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.004885 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.988020 B = 5730.617817 C = 8400.319376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.065 3.935 3 O -0.355 6.355 4 C 0.529 3.471 5 O -0.510 6.510 6 C -0.287 4.287 7 C 0.218 3.782 8 N -0.495 5.495 9 C 0.416 3.584 10 C -0.154 4.154 11 C -0.014 4.014 12 C -0.224 4.224 13 C -0.046 4.046 14 C -0.230 4.230 15 C 0.194 3.806 16 O -0.152 6.152 17 C -0.388 4.388 18 H 0.109 0.891 19 C 0.070 3.930 20 N -0.864 5.864 21 Si 0.899 3.101 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.232 1.232 25 N -0.535 5.535 26 C 0.246 3.754 27 C -0.108 4.108 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.172 0.828 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.138 0.862 38 H 0.283 0.717 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.861 -14.564 1.977 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.272 6.272 4 C 0.374 3.626 5 O -0.400 6.400 6 C -0.294 4.294 7 C 0.048 3.952 8 N -0.209 5.209 9 C 0.161 3.839 10 C -0.159 4.159 11 C -0.034 4.034 12 C -0.243 4.243 13 C -0.065 4.065 14 C -0.249 4.249 15 C 0.135 3.865 16 O -0.050 6.050 17 C -0.464 4.464 18 H 0.126 0.874 19 C -0.137 4.137 20 N -0.499 5.499 21 Si 0.724 3.276 22 H -0.199 1.199 23 H -0.215 1.215 24 H -0.154 1.154 25 N -0.251 5.251 26 C 0.097 3.903 27 C -0.165 4.165 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.189 0.811 34 H 0.147 0.853 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.156 0.844 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.993 -14.017 1.923 15.004 hybrid contribution -1.007 -1.282 -0.058 1.632 sum 3.986 -15.300 1.865 15.920 Atomic orbital electron populations 1.21824 0.92563 1.02926 1.03849 1.23024 0.95371 0.79924 1.02582 1.86567 1.23812 1.32472 1.84329 1.20607 0.80442 0.89093 0.72452 1.90767 1.59815 1.42504 1.46919 1.20539 0.96265 0.92525 1.20071 1.23666 1.00747 0.86292 0.84491 1.68947 1.12649 1.24103 1.15171 1.21589 0.85093 0.92617 0.84601 1.17116 0.92571 0.86119 1.20072 1.20860 0.92418 0.97242 0.92869 1.20617 0.99106 0.92301 1.12283 1.21013 0.93030 0.98241 0.94251 1.21244 0.95762 0.97172 1.10744 1.19059 0.83849 0.91982 0.91590 1.83821 1.12917 1.35043 1.73263 1.21018 0.91196 0.85961 1.48189 0.87410 1.24541 0.95155 0.99408 0.94551 1.69640 1.08137 1.28966 1.43191 0.86255 0.78884 0.83978 0.78512 1.19920 1.21484 1.15419 1.68387 1.39409 0.98280 1.19041 1.21756 0.90318 0.93313 0.84898 1.21026 0.97732 0.93684 1.04040 0.91316 0.91301 0.90229 0.91159 0.91172 0.81079 0.85324 0.86774 0.86757 0.84395 0.90709 0.89465 0.90503 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 37.16 0.38 -0.79 16 2 C 0.06 0.64 6.20 37.16 0.23 0.87 16 3 O -0.35 -4.69 9.58 -40.59 -0.39 -5.08 16 4 C 0.53 7.77 7.84 34.52 0.27 8.04 16 5 O -0.51 -7.66 13.32 -19.26 -0.26 -7.91 16 6 C -0.29 -4.67 5.91 -104.66 -0.62 -5.29 16 7 C 0.22 3.91 10.48 -16.79 -0.18 3.73 16 8 N -0.49 -10.43 7.45 -10.83 -0.08 -10.51 16 9 C 0.42 8.49 7.55 -156.71 -1.18 7.31 16 10 C -0.15 -3.18 5.89 -104.74 -0.62 -3.80 16 11 C -0.01 -0.25 9.56 -39.24 -0.38 -0.62 16 12 C -0.22 -3.59 10.03 -39.60 -0.40 -3.99 16 13 C -0.05 -0.78 10.03 -39.54 -0.40 -1.18 16 14 C -0.23 -4.70 9.16 -39.44 -0.36 -5.06 16 15 C 0.19 4.38 6.65 -38.66 -0.26 4.12 16 16 O -0.15 -3.83 6.37 0.65 0.00 -3.82 16 17 C -0.39 -10.38 9.95 30.90 0.31 -10.07 16 18 H 0.11 2.92 5.44 -52.49 -0.29 2.63 16 19 C 0.07 1.87 5.49 -17.52 -0.10 1.77 16 20 N -0.86 -23.90 13.96 55.48 0.77 -23.13 16 21 Si 0.90 20.74 28.62 -169.99 -4.86 15.87 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.23 -5.19 5.82 56.52 0.33 -4.86 16 25 N -0.53 -9.68 9.36 -7.11 -0.07 -9.75 16 26 C 0.25 3.99 6.87 -81.83 -0.56 3.43 16 27 C -0.11 -1.37 8.96 36.01 0.32 -1.05 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.17 2.76 7.57 -52.48 -0.40 2.36 16 34 H 0.13 2.03 7.50 -52.48 -0.39 1.63 16 35 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.14 2.90 5.64 -52.49 -0.30 2.60 16 38 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.10 1.25 5.99 -51.93 -0.31 0.94 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -29.61 353.10 -7.78 -37.39 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.70 Total: 4.20 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -3.53 Total: -2.59 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.63 Total: -43.39 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.64 Total: -16.81 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.86 Total: 15.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.61 -7.78 -37.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585561.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.487 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.20 seconds